HEADER METAL BINDING PROTEIN/INHIBITOR 22-APR-15 4ZFX TITLE SIDEROCALIN-MEDIATED RECOGNITION AND CELLULAR UPTAKE OF ACTINIDES COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUTROPHIL GELATINASE-ASSOCIATED LIPOCALIN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RESIDUES 24-197; COMPND 5 SYNONYM: NGAL,25 KDA ALPHA-2-MICROGLOBULIN-RELATED SUBUNIT OF MMP-9, COMPND 6 LIPOCALIN-2,ONCOGENE 24P3,SIDEROCALIN LCN2,P25; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LCN2, HNL, NGAL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX KEYWDS METAL BINDING PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.E.ALLRED,P.B.RUPERT,S.S.GAUNY,D.D.AN,C.Y.RALSTON,M.STURZBECHER- AUTHOR 2 HOEHNE,R.K.STRONG,R.J.ABERGEL REVDAT 4 27-SEP-23 4ZFX 1 JRNL REMARK REVDAT 3 02-SEP-15 4ZFX 1 JRNL REVDAT 2 19-AUG-15 4ZFX 1 JRNL REVDAT 1 05-AUG-15 4ZFX 0 JRNL AUTH B.E.ALLRED,P.B.RUPERT,S.S.GAUNY,D.D.AN,C.Y.RALSTON, JRNL AUTH 2 M.STURZBECHER-HOEHNE,R.K.STRONG,R.J.ABERGEL JRNL TITL SIDEROCALIN-MEDIATED RECOGNITION, SENSITIZATION, AND JRNL TITL 2 CELLULAR UPTAKE OF ACTINIDES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 10342 2015 JRNL REFN ESSN 1091-6490 JRNL PMID 26240330 JRNL DOI 10.1073/PNAS.1508902112 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 24968 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1330 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1819 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.4160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4153 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 21 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.40000 REMARK 3 B22 (A**2) : 0.40000 REMARK 3 B33 (A**2) : -0.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.452 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.287 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.200 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.495 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4316 ; 0.011 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4030 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5865 ; 1.448 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9268 ; 1.177 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 516 ; 6.159 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 201 ;35.414 ;24.378 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 713 ;14.889 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;21.043 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 633 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4886 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1035 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2067 ; 1.585 ; 2.911 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2066 ; 1.585 ; 2.910 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2579 ; 2.493 ; 4.362 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 8 176 B 8 176 9141 0.110 0.050 REMARK 3 2 A 5 176 C 5 176 9875 0.110 0.050 REMARK 3 3 B 8 176 C 8 176 9186 0.120 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 177 REMARK 3 ORIGIN FOR THE GROUP (A): 30.3497 74.8971 58.1627 REMARK 3 T TENSOR REMARK 3 T11: 0.0719 T22: 0.0979 REMARK 3 T33: 0.0801 T12: 0.0618 REMARK 3 T13: 0.0341 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 2.7398 L22: 3.8332 REMARK 3 L33: 2.5152 L12: -1.5608 REMARK 3 L13: 0.0788 L23: 0.0256 REMARK 3 S TENSOR REMARK 3 S11: 0.1832 S12: 0.1429 S13: 0.0520 REMARK 3 S21: 0.0053 S22: -0.1492 S23: 0.0065 REMARK 3 S31: -0.1939 S32: -0.2833 S33: -0.0340 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 177 REMARK 3 ORIGIN FOR THE GROUP (A): 53.4151 97.6208 33.6713 REMARK 3 T TENSOR REMARK 3 T11: 0.5080 T22: 0.7240 REMARK 3 T33: 0.3282 T12: -0.2039 REMARK 3 T13: -0.0646 T23: 0.0337 REMARK 3 L TENSOR REMARK 3 L11: 2.8846 L22: 5.9309 REMARK 3 L33: 3.3216 L12: -2.3620 REMARK 3 L13: 0.4559 L23: 0.3096 REMARK 3 S TENSOR REMARK 3 S11: -0.0239 S12: 0.5772 S13: 0.0652 REMARK 3 S21: 0.5611 S22: -0.1887 S23: 0.2772 REMARK 3 S31: 0.0935 S32: -0.4494 S33: 0.2126 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 5 C 177 REMARK 3 ORIGIN FOR THE GROUP (A): 47.1266 46.6217 42.1879 REMARK 3 T TENSOR REMARK 3 T11: 0.0233 T22: 0.0178 REMARK 3 T33: 0.0144 T12: -0.0053 REMARK 3 T13: 0.0057 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 3.5475 L22: 2.6183 REMARK 3 L33: 3.0291 L12: -0.1944 REMARK 3 L13: 0.2943 L23: 0.1507 REMARK 3 S TENSOR REMARK 3 S11: 0.0113 S12: 0.2323 S13: -0.2053 REMARK 3 S21: -0.1462 S22: -0.0175 S23: -0.0662 REMARK 3 S31: 0.2045 S32: -0.0692 S33: 0.0062 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 1 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.2754 T22: 0.2754 REMARK 3 T33: 0.2754 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 2 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.2754 T22: 0.2754 REMARK 3 T33: 0.2754 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 3 D 3 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.2754 T22: 0.2754 REMARK 3 T33: 0.2754 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4ZFX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000209001. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : VARIMAX HF MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26474 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1LM6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NACL, LI2SO4, ACETATE, AMMONIUM REMARK 280 SULFATE, PH 4.0, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.74800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 57.26500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 57.26500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.87400 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 57.26500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 57.26500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 89.62200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 57.26500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.26500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.87400 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 57.26500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.26500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 89.62200 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.74800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 GLN A 1 REMARK 465 ASP A 2 REMARK 465 SER A 3 REMARK 465 GLY A 178 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 GLN B 1 REMARK 465 ASP B 2 REMARK 465 SER B 3 REMARK 465 THR B 4 REMARK 465 SER B 5 REMARK 465 ASP B 6 REMARK 465 LEU B 7 REMARK 465 SER B 146 REMARK 465 GLY B 178 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 GLN C 1 REMARK 465 ASP C 2 REMARK 465 SER C 3 REMARK 465 THR C 4 REMARK 465 GLY C 178 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 ARG A 72 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 98 CG CD CE NZ REMARK 470 LYS B 15 CG CD CE NZ REMARK 470 GLU B 44 CG CD OE1 OE2 REMARK 470 LYS B 46 CG CD CE NZ REMARK 470 GLN B 49 CG CD OE1 NE2 REMARK 470 GLU B 60 CG CD OE1 OE2 REMARK 470 ARG B 72 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 73 CG CD CE NZ REMARK 470 LYS B 74 CG CD CE NZ REMARK 470 LEU B 144 CG CD1 CD2 REMARK 470 THR B 145 OG1 CG2 REMARK 470 GLU B 147 CG CD OE1 OE2 REMARK 470 LYS B 149 CG CD CE NZ REMARK 470 LYS C 46 CG CD CE NZ REMARK 470 LYS C 74 CG CD CE NZ REMARK 470 LYS C 98 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 62 -1.08 76.35 REMARK 500 ASN A 96 54.74 37.26 REMARK 500 TYR A 115 -41.52 70.92 REMARK 500 GLN A 117 -52.75 -139.86 REMARK 500 CYS A 175 -46.88 77.82 REMARK 500 LYS B 62 -2.09 76.51 REMARK 500 ASN B 96 58.33 34.32 REMARK 500 TYR B 115 -40.83 70.49 REMARK 500 GLN B 117 -53.46 -138.46 REMARK 500 CYS B 175 -45.21 77.72 REMARK 500 LYS C 62 -1.63 76.85 REMARK 500 ASN C 96 55.54 37.93 REMARK 500 TYR C 115 -41.57 71.02 REMARK 500 GLN C 117 -53.45 -137.46 REMARK 500 CYS C 175 -44.98 77.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 EB4 A 202 REMARK 610 EB4 C 202 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TH A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EB4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TH B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TH C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EB4 C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 203 DBREF 4ZFX A 1 178 UNP P80188 NGAL_HUMAN 21 198 DBREF 4ZFX B 1 178 UNP P80188 NGAL_HUMAN 21 198 DBREF 4ZFX C 1 178 UNP P80188 NGAL_HUMAN 21 198 SEQADV 4ZFX GLY A -1 UNP P80188 EXPRESSION TAG SEQADV 4ZFX SER A 0 UNP P80188 EXPRESSION TAG SEQADV 4ZFX SER A 87 UNP P80188 CYS 107 ENGINEERED MUTATION SEQADV 4ZFX GLY B -1 UNP P80188 EXPRESSION TAG SEQADV 4ZFX SER B 0 UNP P80188 EXPRESSION TAG SEQADV 4ZFX SER B 87 UNP P80188 CYS 107 ENGINEERED MUTATION SEQADV 4ZFX GLY C -1 UNP P80188 EXPRESSION TAG SEQADV 4ZFX SER C 0 UNP P80188 EXPRESSION TAG SEQADV 4ZFX SER C 87 UNP P80188 CYS 107 ENGINEERED MUTATION SEQRES 1 A 180 GLY SER GLN ASP SER THR SER ASP LEU ILE PRO ALA PRO SEQRES 2 A 180 PRO LEU SER LYS VAL PRO LEU GLN GLN ASN PHE GLN ASP SEQRES 3 A 180 ASN GLN PHE GLN GLY LYS TRP TYR VAL VAL GLY LEU ALA SEQRES 4 A 180 GLY ASN ALA ILE LEU ARG GLU ASP LYS ASP PRO GLN LYS SEQRES 5 A 180 MET TYR ALA THR ILE TYR GLU LEU LYS GLU ASP LYS SER SEQRES 6 A 180 TYR ASN VAL THR SER VAL LEU PHE ARG LYS LYS LYS CYS SEQRES 7 A 180 ASP TYR TRP ILE ARG THR PHE VAL PRO GLY SER GLN PRO SEQRES 8 A 180 GLY GLU PHE THR LEU GLY ASN ILE LYS SER TYR PRO GLY SEQRES 9 A 180 LEU THR SER TYR LEU VAL ARG VAL VAL SER THR ASN TYR SEQRES 10 A 180 ASN GLN HIS ALA MET VAL PHE PHE LYS LYS VAL SER GLN SEQRES 11 A 180 ASN ARG GLU TYR PHE LYS ILE THR LEU TYR GLY ARG THR SEQRES 12 A 180 LYS GLU LEU THR SER GLU LEU LYS GLU ASN PHE ILE ARG SEQRES 13 A 180 PHE SER LYS SER LEU GLY LEU PRO GLU ASN HIS ILE VAL SEQRES 14 A 180 PHE PRO VAL PRO ILE ASP GLN CYS ILE ASP GLY SEQRES 1 B 180 GLY SER GLN ASP SER THR SER ASP LEU ILE PRO ALA PRO SEQRES 2 B 180 PRO LEU SER LYS VAL PRO LEU GLN GLN ASN PHE GLN ASP SEQRES 3 B 180 ASN GLN PHE GLN GLY LYS TRP TYR VAL VAL GLY LEU ALA SEQRES 4 B 180 GLY ASN ALA ILE LEU ARG GLU ASP LYS ASP PRO GLN LYS SEQRES 5 B 180 MET TYR ALA THR ILE TYR GLU LEU LYS GLU ASP LYS SER SEQRES 6 B 180 TYR ASN VAL THR SER VAL LEU PHE ARG LYS LYS LYS CYS SEQRES 7 B 180 ASP TYR TRP ILE ARG THR PHE VAL PRO GLY SER GLN PRO SEQRES 8 B 180 GLY GLU PHE THR LEU GLY ASN ILE LYS SER TYR PRO GLY SEQRES 9 B 180 LEU THR SER TYR LEU VAL ARG VAL VAL SER THR ASN TYR SEQRES 10 B 180 ASN GLN HIS ALA MET VAL PHE PHE LYS LYS VAL SER GLN SEQRES 11 B 180 ASN ARG GLU TYR PHE LYS ILE THR LEU TYR GLY ARG THR SEQRES 12 B 180 LYS GLU LEU THR SER GLU LEU LYS GLU ASN PHE ILE ARG SEQRES 13 B 180 PHE SER LYS SER LEU GLY LEU PRO GLU ASN HIS ILE VAL SEQRES 14 B 180 PHE PRO VAL PRO ILE ASP GLN CYS ILE ASP GLY SEQRES 1 C 180 GLY SER GLN ASP SER THR SER ASP LEU ILE PRO ALA PRO SEQRES 2 C 180 PRO LEU SER LYS VAL PRO LEU GLN GLN ASN PHE GLN ASP SEQRES 3 C 180 ASN GLN PHE GLN GLY LYS TRP TYR VAL VAL GLY LEU ALA SEQRES 4 C 180 GLY ASN ALA ILE LEU ARG GLU ASP LYS ASP PRO GLN LYS SEQRES 5 C 180 MET TYR ALA THR ILE TYR GLU LEU LYS GLU ASP LYS SER SEQRES 6 C 180 TYR ASN VAL THR SER VAL LEU PHE ARG LYS LYS LYS CYS SEQRES 7 C 180 ASP TYR TRP ILE ARG THR PHE VAL PRO GLY SER GLN PRO SEQRES 8 C 180 GLY GLU PHE THR LEU GLY ASN ILE LYS SER TYR PRO GLY SEQRES 9 C 180 LEU THR SER TYR LEU VAL ARG VAL VAL SER THR ASN TYR SEQRES 10 C 180 ASN GLN HIS ALA MET VAL PHE PHE LYS LYS VAL SER GLN SEQRES 11 C 180 ASN ARG GLU TYR PHE LYS ILE THR LEU TYR GLY ARG THR SEQRES 12 C 180 LYS GLU LEU THR SER GLU LEU LYS GLU ASN PHE ILE ARG SEQRES 13 C 180 PHE SER LYS SER LEU GLY LEU PRO GLU ASN HIS ILE VAL SEQRES 14 C 180 PHE PRO VAL PRO ILE ASP GLN CYS ILE ASP GLY HET TH A 201 1 HET EB4 A 202 15 HET TH B 200 1 HET TH C 201 1 HET EB4 C 202 16 HET SO4 C 203 5 HETNAM TH THORIUM ION HETNAM EB4 N,N',N''-[(3S,7S,11S)-2,6,10-TRIOXO-1,5,9- HETNAM 2 EB4 TRIOXACYCLODODECANE-3,7,11-TRIYL]TRIS(2,3- HETNAM 3 EB4 DIHYDROXYBENZAMIDE) HETNAM SO4 SULFATE ION HETSYN EB4 ENTEROBACTIN FORMUL 4 TH 3(TH 4+) FORMUL 5 EB4 2(C30 H27 N3 O15) FORMUL 9 SO4 O4 S 2- FORMUL 10 HOH *21(H2 O) HELIX 1 AA1 PRO A 12 VAL A 16 5 5 HELIX 2 AA2 GLN A 23 GLN A 28 1 6 HELIX 3 AA3 ASN A 96 TYR A 100 5 5 HELIX 4 AA4 THR A 145 LEU A 159 1 15 HELIX 5 AA5 PRO A 162 ASN A 164 5 3 HELIX 6 AA6 PRO B 12 VAL B 16 5 5 HELIX 7 AA7 ASN B 96 TYR B 100 5 5 HELIX 8 AA8 LEU B 148 LEU B 159 1 12 HELIX 9 AA9 PRO B 162 ASN B 164 5 3 HELIX 10 AB1 PRO C 12 VAL C 16 5 5 HELIX 11 AB2 ASN C 96 TYR C 100 5 5 HELIX 12 AB3 THR C 145 LEU C 159 1 15 HELIX 13 AB4 PRO C 162 ASN C 164 5 3 SHEET 1 AA110 ILE A 166 VAL A 167 0 SHEET 2 AA110 GLY A 29 GLY A 38 -1 N LEU A 36 O VAL A 167 SHEET 3 AA110 ARG A 130 GLY A 139 -1 O GLY A 139 N TYR A 32 SHEET 4 AA110 HIS A 118 SER A 127 -1 N ALA A 119 O TYR A 138 SHEET 5 AA110 LEU A 103 THR A 113 -1 N LEU A 107 O LYS A 124 SHEET 6 AA110 GLU A 91 LEU A 94 -1 N PHE A 92 O VAL A 108 SHEET 7 AA110 LYS A 75 PRO A 85 -1 N VAL A 84 O THR A 93 SHEET 8 AA110 TYR A 64 ARG A 72 -1 N LEU A 70 O ASP A 77 SHEET 9 AA110 ALA A 53 LEU A 58 -1 N GLU A 57 O ASN A 65 SHEET 10 AA110 GLY A 29 GLY A 38 -1 N GLY A 29 O TYR A 56 SHEET 1 AA210 ILE B 166 VAL B 167 0 SHEET 2 AA210 GLY B 29 GLY B 38 -1 N LEU B 36 O VAL B 167 SHEET 3 AA210 ARG B 130 GLY B 139 -1 O GLY B 139 N TYR B 32 SHEET 4 AA210 HIS B 118 SER B 127 -1 N ALA B 119 O TYR B 138 SHEET 5 AA210 LEU B 103 THR B 113 -1 N LEU B 107 O LYS B 124 SHEET 6 AA210 GLU B 91 LEU B 94 -1 N PHE B 92 O VAL B 108 SHEET 7 AA210 LYS B 75 PRO B 85 -1 N VAL B 84 O THR B 93 SHEET 8 AA210 TYR B 64 ARG B 72 -1 N LEU B 70 O ASP B 77 SHEET 9 AA210 ALA B 53 LEU B 58 -1 N GLU B 57 O ASN B 65 SHEET 10 AA210 GLY B 29 GLY B 38 -1 N GLY B 29 O TYR B 56 SHEET 1 AA310 ILE C 166 VAL C 167 0 SHEET 2 AA310 GLY C 29 GLY C 38 -1 N LEU C 36 O VAL C 167 SHEET 3 AA310 ARG C 130 GLY C 139 -1 O GLY C 139 N TYR C 32 SHEET 4 AA310 HIS C 118 SER C 127 -1 N ALA C 119 O TYR C 138 SHEET 5 AA310 LEU C 103 THR C 113 -1 N LEU C 107 O LYS C 124 SHEET 6 AA310 GLU C 91 LEU C 94 -1 N PHE C 92 O VAL C 108 SHEET 7 AA310 LYS C 75 PRO C 85 -1 N VAL C 84 O THR C 93 SHEET 8 AA310 TYR C 64 ARG C 72 -1 N LEU C 70 O ASP C 77 SHEET 9 AA310 ALA C 53 LEU C 58 -1 N GLU C 57 O ASN C 65 SHEET 10 AA310 GLY C 29 GLY C 38 -1 N GLY C 29 O TYR C 56 SSBOND 1 CYS A 76 CYS A 175 1555 1555 2.06 SSBOND 2 CYS B 76 CYS B 175 1555 1555 2.04 SSBOND 3 CYS C 76 CYS C 175 1555 1555 2.05 SITE 1 AC1 1 EB4 A 202 SITE 1 AC2 8 ALA A 40 TYR A 106 PHE A 123 LYS A 125 SITE 2 AC2 8 TYR A 132 LYS A 134 TH A 201 HOH A 303 SITE 1 AC3 1 ARG B 81 SITE 1 AC4 1 EB4 C 202 SITE 1 AC5 7 TYR C 106 PHE C 123 LYS C 125 TYR C 132 SITE 2 AC5 7 LYS C 134 TH C 201 HOH C 309 SITE 1 AC6 3 LYS A 75 ASN C 164 HIS C 165 CRYST1 114.530 114.530 119.496 90.00 90.00 90.00 P 41 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008731 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008731 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008368 0.00000