HEADER LYASE/LYASE INHIBITOR 24-APR-15 4ZGY TITLE STRUCTURE OF HUMAN ORNITHINE DECARBOXYLASE IN COMPLEX WITH A C- TITLE 2 TERMINAL FRAGMENT OF ANTIZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORNITHINE DECARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 2-421; COMPND 5 SYNONYM: ODC; COMPND 6 EC: 4.1.1.17; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ORNITHINE DECARBOXYLASE ANTIZYME 1; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 95-219; COMPND 12 SYNONYM: ODC-AZ; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ODC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL-21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: 28A-ODC; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: OAZ1, OAZ; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL-21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PQE30-AZ95 KEYWDS TIM-BARREL DOMAIN, BETA-SHEET DOMAIN, DECARBOXYLATION, ANTIZYME, KEYWDS 2 PLASMA, LYASE-LYASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.Y.WU,N.L.CHAN REVDAT 4 29-NOV-23 4ZGY 1 JRNL REMARK REVDAT 3 14-OCT-15 4ZGY 1 JRNL REVDAT 2 16-SEP-15 4ZGY 1 JRNL REVDAT 1 02-SEP-15 4ZGY 0 JRNL AUTH H.Y.WU,S.F.CHEN,J.Y.HSIEH,F.CHOU,Y.H.WANG,W.T.LIN,P.Y.LEE, JRNL AUTH 2 Y.J.YU,L.Y.LIN,T.S.LIN,C.L.LIN,G.Y.LIU,S.R.TZENG,H.C.HUNG, JRNL AUTH 3 N.L.CHAN JRNL TITL STRUCTURAL BASIS OF ANTIZYME-MEDIATED REGULATION OF JRNL TITL 2 POLYAMINE HOMEOSTASIS JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 11229 2015 JRNL REFN ESSN 1091-6490 JRNL PMID 26305948 JRNL DOI 10.1073/PNAS.1508187112 REMARK 2 REMARK 2 RESOLUTION. 2.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 3 NUMBER OF REFLECTIONS : 17509 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1753 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.2924 - 6.1619 0.94 1338 149 0.2049 0.2389 REMARK 3 2 6.1619 - 4.9041 0.99 1327 148 0.2077 0.2303 REMARK 3 3 4.9041 - 4.2881 0.99 1309 145 0.1673 0.2183 REMARK 3 4 4.2881 - 3.8977 0.97 1275 143 0.1803 0.2614 REMARK 3 5 3.8977 - 3.6193 0.94 1231 136 0.1929 0.2502 REMARK 3 6 3.6193 - 3.4066 0.93 1226 137 0.1965 0.2419 REMARK 3 7 3.4066 - 3.2364 0.92 1167 130 0.1981 0.2889 REMARK 3 8 3.2364 - 3.0958 0.91 1192 131 0.2277 0.2771 REMARK 3 9 3.0958 - 2.9768 0.89 1157 130 0.2251 0.3106 REMARK 3 10 2.9768 - 2.8743 0.90 1141 127 0.2384 0.3064 REMARK 3 11 2.8743 - 2.7845 0.89 1159 128 0.2934 0.3755 REMARK 3 12 2.7845 - 2.7050 0.90 1130 126 0.3052 0.4037 REMARK 3 13 2.7050 - 2.6339 0.86 1104 123 0.3068 0.3889 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 62.89 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 72.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 17.41260 REMARK 3 B22 (A**2) : -4.66160 REMARK 3 B33 (A**2) : -10.26020 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4057 REMARK 3 ANGLE : 0.678 5486 REMARK 3 CHIRALITY : 0.045 614 REMARK 3 PLANARITY : 0.002 699 REMARK 3 DIHEDRAL : 10.980 1469 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A') OR (CHAIN 'B') REMARK 3 ORIGIN FOR THE GROUP (A): 12.2419 3.3242 18.8422 REMARK 3 T TENSOR REMARK 3 T11: 0.2573 T22: 0.4025 REMARK 3 T33: 0.3154 T12: 0.0578 REMARK 3 T13: 0.0092 T23: 0.0680 REMARK 3 L TENSOR REMARK 3 L11: 1.5258 L22: 2.2021 REMARK 3 L33: 3.6546 L12: 0.5170 REMARK 3 L13: -0.6320 L23: 0.0999 REMARK 3 S TENSOR REMARK 3 S11: 0.0906 S12: 0.0284 S13: -0.0639 REMARK 3 S21: 0.1017 S22: -0.2408 S23: 0.0186 REMARK 3 S31: 0.1491 S32: 0.4766 S33: 0.1293 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZGY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000209265. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : LN2-COOLED, FIXED-EXIT DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR(CRYSTAL REMARK 200 TYPE SI(111)) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000, HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17556 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 24.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.02800 REMARK 200 FOR THE DATA SET : 23.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.19300 REMARK 200 R SYM FOR SHELL (I) : 0.19300 REMARK 200 FOR SHELL : 5.760 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.7.3_928 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM MAGNESIUM ACETATE, 50MM MES PH REMARK 280 5.6, 20% 2-METHYL-2, 4-PENTANEDIOL(MPD), VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.84900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.04200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.68400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.04200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.84900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.68400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 ASN A 2 REMARK 465 ASN A 3 REMARK 465 PHE A 4 REMARK 465 GLY A 5 REMARK 465 ASN A 6 REMARK 465 GLU A 7 REMARK 465 GLU A 8 REMARK 465 PHE A 9 REMARK 465 ASP A 10 REMARK 465 CYS A 11 REMARK 465 HIS A 12 REMARK 465 PHE A 13 REMARK 465 LEU A 14 REMARK 465 ASP A 15 REMARK 465 GLU A 16 REMARK 465 GLY A 17 REMARK 465 PHE A 18 REMARK 465 VAL A 31 REMARK 465 SER A 32 REMARK 465 SER A 33 REMARK 465 SER A 34 REMARK 465 ASP A 35 REMARK 465 ASP A 36 REMARK 465 LYS A 161 REMARK 465 ALA A 162 REMARK 465 VAL A 163 REMARK 465 SER A 303 REMARK 465 ASP A 304 REMARK 465 ASP A 305 REMARK 465 GLU A 306 REMARK 465 ASP A 307 REMARK 465 GLU A 308 REMARK 465 LYS A 345 REMARK 465 PRO A 346 REMARK 465 ASP A 347 REMARK 465 ALA A 393 REMARK 465 ALA A 394 REMARK 465 MET B 85 REMARK 465 ARG B 86 REMARK 465 GLY B 87 REMARK 465 SER B 88 REMARK 465 HIS B 89 REMARK 465 HIS B 90 REMARK 465 HIS B 91 REMARK 465 HIS B 92 REMARK 465 HIS B 93 REMARK 465 HIS B 94 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 165 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 178 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 266 CG OD1 OD2 REMARK 470 LYS A 337 CG CD CE NZ REMARK 470 ARG A 369 NE CZ NH1 NH2 REMARK 470 GLN A 418 CG CD OE1 NE2 REMARK 470 ARG B 100 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 106 CG CD OE1 OE2 REMARK 470 ASN B 110 CG OD1 ND2 REMARK 470 ASP B 111 CG OD1 OD2 REMARK 470 ASN B 117 CG OD1 ND2 REMARK 470 ARG B 199 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 69 C4 PLP A 501 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 20 -84.21 -96.91 REMARK 500 ASN A 71 101.93 -164.71 REMARK 500 ASP A 72 30.57 -92.93 REMARK 500 TYR A 230 -9.37 -141.61 REMARK 500 ASP A 243 37.55 -79.61 REMARK 500 ASN A 319 34.58 -90.04 REMARK 500 PHE A 326 40.47 -108.64 REMARK 500 LYS A 342 75.26 -111.46 REMARK 500 CYS A 360 18.47 59.41 REMARK 500 ASP B 98 -73.14 -85.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 238 O REMARK 620 2 PLP A 501 O1P 134.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1D7K RELATED DB: PDB REMARK 900 HUMAN ORNITHINE DECARBOXYLASE REMARK 900 RELATED ID: 1ZO0 RELATED DB: PDB REMARK 900 RAT ORNITHINE DECARBOXYLASE ANTIZYME DBREF 4ZGY A 2 421 UNP P11926 DCOR_HUMAN 2 421 DBREF 4ZGY B 95 219 UNP P54368 OAZ1_HUMAN 95 219 SEQADV 4ZGY MET A 0 UNP P11926 INITIATING METHIONINE SEQADV 4ZGY GLY A 1 UNP P11926 EXPRESSION TAG SEQADV 4ZGY MET B 85 UNP P54368 INITIATING METHIONINE SEQADV 4ZGY ARG B 86 UNP P54368 EXPRESSION TAG SEQADV 4ZGY GLY B 87 UNP P54368 EXPRESSION TAG SEQADV 4ZGY SER B 88 UNP P54368 EXPRESSION TAG SEQADV 4ZGY HIS B 89 UNP P54368 EXPRESSION TAG SEQADV 4ZGY HIS B 90 UNP P54368 EXPRESSION TAG SEQADV 4ZGY HIS B 91 UNP P54368 EXPRESSION TAG SEQADV 4ZGY HIS B 92 UNP P54368 EXPRESSION TAG SEQADV 4ZGY HIS B 93 UNP P54368 EXPRESSION TAG SEQADV 4ZGY HIS B 94 UNP P54368 EXPRESSION TAG SEQRES 1 A 422 MET GLY ASN ASN PHE GLY ASN GLU GLU PHE ASP CYS HIS SEQRES 2 A 422 PHE LEU ASP GLU GLY PHE THR ALA LYS ASP ILE LEU ASP SEQRES 3 A 422 GLN LYS ILE ASN GLU VAL SER SER SER ASP ASP LYS ASP SEQRES 4 A 422 ALA PHE TYR VAL ALA ASP LEU GLY ASP ILE LEU LYS LYS SEQRES 5 A 422 HIS LEU ARG TRP LEU LYS ALA LEU PRO ARG VAL THR PRO SEQRES 6 A 422 PHE TYR ALA VAL LYS CYS ASN ASP SER LYS ALA ILE VAL SEQRES 7 A 422 LYS THR LEU ALA ALA THR GLY THR GLY PHE ASP CYS ALA SEQRES 8 A 422 SER LYS THR GLU ILE GLN LEU VAL GLN SER LEU GLY VAL SEQRES 9 A 422 PRO PRO GLU ARG ILE ILE TYR ALA ASN PRO CYS LYS GLN SEQRES 10 A 422 VAL SER GLN ILE LYS TYR ALA ALA ASN ASN GLY VAL GLN SEQRES 11 A 422 MET MET THR PHE ASP SER GLU VAL GLU LEU MET LYS VAL SEQRES 12 A 422 ALA ARG ALA HIS PRO LYS ALA LYS LEU VAL LEU ARG ILE SEQRES 13 A 422 ALA THR ASP ASP SER LYS ALA VAL CYS ARG LEU SER VAL SEQRES 14 A 422 LYS PHE GLY ALA THR LEU ARG THR SER ARG LEU LEU LEU SEQRES 15 A 422 GLU ARG ALA LYS GLU LEU ASN ILE ASP VAL VAL GLY VAL SEQRES 16 A 422 SER PHE HIS VAL GLY SER GLY CYS THR ASP PRO GLU THR SEQRES 17 A 422 PHE VAL GLN ALA ILE SER ASP ALA ARG CYS VAL PHE ASP SEQRES 18 A 422 MET GLY ALA GLU VAL GLY PHE SER MET TYR LEU LEU ASP SEQRES 19 A 422 ILE GLY GLY GLY PHE PRO GLY SER GLU ASP VAL LYS LEU SEQRES 20 A 422 LYS PHE GLU GLU ILE THR GLY VAL ILE ASN PRO ALA LEU SEQRES 21 A 422 ASP LYS TYR PHE PRO SER ASP SER GLY VAL ARG ILE ILE SEQRES 22 A 422 ALA GLU PRO GLY ARG TYR TYR VAL ALA SER ALA PHE THR SEQRES 23 A 422 LEU ALA VAL ASN ILE ILE ALA LYS LYS ILE VAL LEU LYS SEQRES 24 A 422 GLU GLN THR GLY SER ASP ASP GLU ASP GLU SER SER GLU SEQRES 25 A 422 GLN THR PHE MET TYR TYR VAL ASN ASP GLY VAL TYR GLY SEQRES 26 A 422 SER PHE ASN CYS ILE LEU TYR ASP HIS ALA HIS VAL LYS SEQRES 27 A 422 PRO LEU LEU GLN LYS ARG PRO LYS PRO ASP GLU LYS TYR SEQRES 28 A 422 TYR SER SER SER ILE TRP GLY PRO THR CYS ASP GLY LEU SEQRES 29 A 422 ASP ARG ILE VAL GLU ARG CYS ASP LEU PRO GLU MET HIS SEQRES 30 A 422 VAL GLY ASP TRP MET LEU PHE GLU ASN MET GLY ALA TYR SEQRES 31 A 422 THR VAL ALA ALA ALA SER THR PHE ASN GLY PHE GLN ARG SEQRES 32 A 422 PRO THR ILE TYR TYR VAL MET SER GLY PRO ALA TRP GLN SEQRES 33 A 422 LEU MET GLN GLN PHE GLN SEQRES 1 B 135 MET ARG GLY SER HIS HIS HIS HIS HIS HIS PHE TYR SER SEQRES 2 B 135 ASP ASP ARG LEU ASN VAL THR GLU GLU LEU THR SER ASN SEQRES 3 B 135 ASP LYS THR ARG ILE LEU ASN VAL GLN SER ARG LEU THR SEQRES 4 B 135 ASP ALA LYS ARG ILE ASN TRP ARG THR VAL LEU SER GLY SEQRES 5 B 135 GLY SER LEU TYR ILE GLU ILE PRO GLY GLY ALA LEU PRO SEQRES 6 B 135 GLU GLY SER LYS ASP SER PHE ALA VAL LEU LEU GLU PHE SEQRES 7 B 135 ALA GLU GLU GLN LEU ARG ALA ASP HIS VAL PHE ILE CYS SEQRES 8 B 135 PHE HIS LYS ASN ARG GLU ASP ARG ALA ALA LEU LEU ARG SEQRES 9 B 135 THR PHE SER PHE LEU GLY PHE GLU ILE VAL ARG PRO GLY SEQRES 10 B 135 HIS PRO LEU VAL PRO LYS ARG PRO ASP ALA CYS PHE MET SEQRES 11 B 135 ALA TYR THR PHE GLU HET PLP A 501 15 HET MG A 502 1 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM MG MAGNESIUM ION HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 3 PLP C8 H10 N O6 P FORMUL 4 MG MG 2+ FORMUL 5 HOH *13(H2 O) HELIX 1 AA1 LYS A 21 GLU A 30 1 10 HELIX 2 AA2 LEU A 45 LEU A 59 1 15 HELIX 3 AA3 LYS A 69 ASN A 71 5 3 HELIX 4 AA4 SER A 73 GLY A 84 1 12 HELIX 5 AA5 SER A 91 SER A 100 1 10 HELIX 6 AA6 PRO A 104 GLU A 106 5 3 HELIX 7 AA7 GLN A 116 ASN A 126 1 11 HELIX 8 AA8 SER A 135 HIS A 146 1 12 HELIX 9 AA9 THR A 173 LEU A 187 1 15 HELIX 10 AB1 PRO A 205 GLY A 226 1 22 HELIX 11 AB2 LYS A 247 PHE A 263 1 17 HELIX 12 AB3 PRO A 264 GLY A 268 5 5 HELIX 13 AB4 GLY A 276 ALA A 281 1 6 HELIX 14 AB5 PHE A 326 HIS A 333 1 8 HELIX 15 AB6 SER A 410 GLN A 421 1 12 HELIX 16 AB7 GLY B 151 GLN B 166 1 16 HELIX 17 AB8 ASP B 182 GLY B 194 1 13 SHEET 1 AA1 6 LEU A 339 LEU A 340 0 SHEET 2 AA1 6 TRP A 380 PHE A 383 -1 O LEU A 382 N LEU A 339 SHEET 3 AA1 6 PHE A 284 LYS A 298 -1 N LEU A 286 O PHE A 383 SHEET 4 AA1 6 GLU A 311 VAL A 318 -1 O TYR A 317 N ILE A 291 SHEET 5 AA1 6 TYR A 351 TRP A 356 1 O TRP A 356 N TYR A 316 SHEET 6 AA1 6 ARG A 365 LEU A 372 -1 O LEU A 372 N TYR A 351 SHEET 1 AA2 5 LEU A 339 LEU A 340 0 SHEET 2 AA2 5 TRP A 380 PHE A 383 -1 O LEU A 382 N LEU A 339 SHEET 3 AA2 5 PHE A 284 LYS A 298 -1 N LEU A 286 O PHE A 383 SHEET 4 AA2 5 PHE A 40 ASP A 44 -1 N PHE A 40 O ALA A 287 SHEET 5 AA2 5 ILE A 405 VAL A 408 1 O TYR A 406 N ALA A 43 SHEET 1 AA3 9 VAL A 62 ALA A 67 0 SHEET 2 AA3 9 GLY A 86 CYS A 89 1 O GLY A 86 N PRO A 64 SHEET 3 AA3 9 ILE A 108 TYR A 110 1 O ILE A 109 N PHE A 87 SHEET 4 AA3 9 MET A 130 PHE A 133 1 O MET A 130 N TYR A 110 SHEET 5 AA3 9 LYS A 150 ARG A 154 1 O ARG A 154 N PHE A 133 SHEET 6 AA3 9 ASP A 190 SER A 195 1 O ASP A 190 N LEU A 151 SHEET 7 AA3 9 LEU A 231 ASP A 233 1 O ASP A 233 N VAL A 194 SHEET 8 AA3 9 ARG A 270 ALA A 273 1 O ILE A 272 N LEU A 232 SHEET 9 AA3 9 VAL A 62 ALA A 67 1 N THR A 63 O ILE A 271 SHEET 1 AA4 8 TYR B 96 ARG B 100 0 SHEET 2 AA4 8 THR B 104 SER B 109 -1 O THR B 108 N TYR B 96 SHEET 3 AA4 8 ARG B 114 SER B 120 -1 O ASN B 117 N LEU B 107 SHEET 4 AA4 8 ILE B 128 SER B 135 -1 O LEU B 134 N ARG B 114 SHEET 5 AA4 8 SER B 138 GLU B 142 -1 O GLU B 142 N ARG B 131 SHEET 6 AA4 8 HIS B 171 HIS B 177 1 O PHE B 173 N LEU B 139 SHEET 7 AA4 8 ALA B 211 THR B 217 -1 O CYS B 212 N PHE B 176 SHEET 8 AA4 8 GLU B 196 ILE B 197 -1 N GLU B 196 O ALA B 215 LINK NZ LYS A 69 C4A PLP A 501 1555 1555 1.31 LINK O PHE A 238 MG MG A 502 1555 1555 2.21 LINK O1P PLP A 501 MG MG A 502 1555 1555 2.21 SITE 1 AC1 11 LYS A 69 ASP A 88 ALA A 111 HIS A 197 SITE 2 AC1 11 GLY A 237 GLU A 274 GLY A 276 ARG A 277 SITE 3 AC1 11 TYR A 389 MG A 502 PHE B 192 SITE 1 AC2 5 PHE A 238 GLY A 276 ARG A 277 TYR A 278 SITE 2 AC2 5 PLP A 501 CRYST1 51.698 73.368 162.084 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019343 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013630 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006170 0.00000