HEADER METAL BINDING PROTEIN/INHIBITOR 24-APR-15 4ZHD TITLE SIDEROCALIN-MEDIATED RECOGNITION AND CELLULAR UPTAKE OF ACTINIDES COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUTROPHIL GELATINASE-ASSOCIATED LIPOCALIN; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RESIDUES 23-197; COMPND 5 SYNONYM: NGAL,25 KDA ALPHA-2-MICROGLOBULIN-RELATED SUBUNIT OF MMP-9, COMPND 6 LIPOCALIN-2,ONCOGENE 24P3,SIDEROCALIN LCN2,P25; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: LCN2, HNL, NGAL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX KEYWDS METAL BINDING PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.E.ALLRED,P.B.RUPERT,S.S.GAUNY,D.D.AN,C.Y.RALSTON,M.STURZBECHER- AUTHOR 2 HOEHNE,R.K.STRONG,R.J.ABERGEL REVDAT 4 27-SEP-23 4ZHD 1 JRNL REMARK REVDAT 3 02-SEP-15 4ZHD 1 JRNL REVDAT 2 19-AUG-15 4ZHD 1 JRNL REVDAT 1 05-AUG-15 4ZHD 0 JRNL AUTH B.E.ALLRED,P.B.RUPERT,S.S.GAUNY,D.D.AN,C.Y.RALSTON, JRNL AUTH 2 M.STURZBECHER-HOEHNE,R.K.STRONG,R.J.ABERGEL JRNL TITL SIDEROCALIN-MEDIATED RECOGNITION, SENSITIZATION, AND JRNL TITL 2 CELLULAR UPTAKE OF ACTINIDES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 10342 2015 JRNL REFN ESSN 1091-6490 JRNL PMID 26240330 JRNL DOI 10.1073/PNAS.1508902112 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 47305 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2526 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3357 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 188 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4144 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 85 REMARK 3 SOLVENT ATOMS : 96 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.29000 REMARK 3 B22 (A**2) : 0.29000 REMARK 3 B33 (A**2) : -0.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.162 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.901 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4358 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4062 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5925 ; 1.146 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9328 ; 0.754 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 526 ; 7.176 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 191 ;35.599 ;24.188 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 702 ;14.840 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;21.687 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 646 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4918 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1043 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2089 ; 2.717 ; 2.201 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2088 ; 2.711 ; 2.200 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2608 ; 3.523 ; 3.275 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 6 176 B 6 176 9397 0.130 0.050 REMARK 3 2 A 4 176 C 4 176 9498 0.130 0.050 REMARK 3 3 B 6 176 C 6 176 9636 0.130 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 177 REMARK 3 ORIGIN FOR THE GROUP (A): 30.2237 74.8194 57.5249 REMARK 3 T TENSOR REMARK 3 T11: 0.0670 T22: 0.0866 REMARK 3 T33: 0.0856 T12: 0.0631 REMARK 3 T13: 0.0184 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 2.6265 L22: 3.1680 REMARK 3 L33: 1.9926 L12: -1.2536 REMARK 3 L13: 0.3538 L23: 0.3113 REMARK 3 S TENSOR REMARK 3 S11: 0.1729 S12: 0.1000 S13: 0.0557 REMARK 3 S21: 0.0333 S22: -0.1149 S23: -0.0669 REMARK 3 S31: -0.0608 S32: -0.1752 S33: -0.0581 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 177 REMARK 3 ORIGIN FOR THE GROUP (A): 53.7018 97.5006 33.7849 REMARK 3 T TENSOR REMARK 3 T11: 0.2953 T22: 0.3931 REMARK 3 T33: 0.2157 T12: -0.0501 REMARK 3 T13: -0.0016 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 2.8729 L22: 3.8057 REMARK 3 L33: 3.0545 L12: -0.7569 REMARK 3 L13: 0.3539 L23: 0.9108 REMARK 3 S TENSOR REMARK 3 S11: 0.1087 S12: 0.1147 S13: 0.0559 REMARK 3 S21: 0.0771 S22: -0.1222 S23: 0.2317 REMARK 3 S31: -0.1693 S32: -0.3441 S33: 0.0134 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 4 C 177 REMARK 3 ORIGIN FOR THE GROUP (A): 47.1799 46.6483 42.0043 REMARK 3 T TENSOR REMARK 3 T11: 0.0339 T22: 0.0125 REMARK 3 T33: 0.0287 T12: -0.0075 REMARK 3 T13: 0.0118 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 2.8171 L22: 2.0247 REMARK 3 L33: 2.5550 L12: -0.4369 REMARK 3 L13: 0.2254 L23: -0.3701 REMARK 3 S TENSOR REMARK 3 S11: -0.0200 S12: 0.1268 S13: -0.1871 REMARK 3 S21: -0.1292 S22: -0.0171 S23: -0.0084 REMARK 3 S31: 0.2650 S32: -0.0334 S33: 0.0371 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 200 A 200 REMARK 3 ORIGIN FOR THE GROUP (A): 27.8645 76.9444 65.6131 REMARK 3 T TENSOR REMARK 3 T11: 0.2492 T22: 0.3063 REMARK 3 T33: 0.2760 T12: 0.0408 REMARK 3 T13: -0.0015 T23: 0.0543 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0001 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 200 B 200 REMARK 3 ORIGIN FOR THE GROUP (A): 56.3690 105.7739 35.7936 REMARK 3 T TENSOR REMARK 3 T11: 0.7305 T22: 0.6835 REMARK 3 T33: 0.5633 T12: -0.0395 REMARK 3 T13: 0.0932 T23: 0.0899 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0003 REMARK 3 S21: 0.0000 S22: 0.0000 S23: -0.0002 REMARK 3 S31: -0.0005 S32: 0.0002 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 200 C 200 REMARK 3 ORIGIN FOR THE GROUP (A): 48.2649 38.5537 42.0537 REMARK 3 T TENSOR REMARK 3 T11: 0.1708 T22: 0.4490 REMARK 3 T33: 1.0874 T12: -0.2182 REMARK 3 T13: 0.0613 T23: -0.5042 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: -0.0001 S13: 0.0004 REMARK 3 S21: 0.0000 S22: 0.0001 S23: -0.0004 REMARK 3 S31: -0.0001 S32: 0.0001 S33: -0.0001 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4ZHD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000209282. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49864 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.36800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC 5.8.0049 REMARK 200 STARTING MODEL: 1LM6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NACL, LI2SO4, ACETATE, AMMONIUM REMARK 280 SULFATE, PH 4.0, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.39050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 57.29450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 57.29450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.69525 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 57.29450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 57.29450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 89.08575 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 57.29450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.29450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.69525 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 57.29450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.29450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 89.08575 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 59.39050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 337 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 GLN A 1 REMARK 465 ASP A 2 REMARK 465 SER A 3 REMARK 465 GLY A 178 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 GLN B 1 REMARK 465 ASP B 2 REMARK 465 SER B 3 REMARK 465 THR B 4 REMARK 465 SER B 5 REMARK 465 GLY B 178 REMARK 465 GLY C -1 REMARK 465 SER C 0 REMARK 465 GLN C 1 REMARK 465 ASP C 2 REMARK 465 GLY C 178 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 20 CG CD OE1 NE2 REMARK 470 ARG A 43 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 ASP A 47 CG OD1 OD2 REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 ARG A 72 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 LYS A 98 CG CD CE NZ REMARK 470 GLU B 44 CG CD OE1 OE2 REMARK 470 ASP B 45 CG OD1 OD2 REMARK 470 LYS B 46 CG CD CE NZ REMARK 470 ASP B 47 CG OD1 OD2 REMARK 470 GLN B 49 CG CD OE1 NE2 REMARK 470 GLU B 57 CG CD OE1 OE2 REMARK 470 ARG B 72 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 73 CG CD CE NZ REMARK 470 LYS B 74 CG CD CE NZ REMARK 470 GLU B 143 CG CD OE1 OE2 REMARK 470 GLU B 147 CG CD OE1 OE2 REMARK 470 GLU B 150 CG CD OE1 OE2 REMARK 470 SER C 3 OG REMARK 470 GLU C 44 CG CD OE1 OE2 REMARK 470 LYS C 46 CB CG CD CE NZ REMARK 470 ASP C 47 CB CG OD1 OD2 REMARK 470 GLU C 60 CG CD OE1 OE2 REMARK 470 LYS C 73 CG CD CE NZ REMARK 470 LYS C 74 CG CD CE NZ REMARK 470 LYS C 98 CG CD CE NZ REMARK 470 GLU C 150 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY B 95 O HOH B 301 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 62 3.76 82.89 REMARK 500 TYR A 115 -41.36 72.21 REMARK 500 GLN A 117 -48.55 -138.99 REMARK 500 CYS A 175 -41.20 76.32 REMARK 500 LYS B 62 -0.48 86.12 REMARK 500 TYR B 115 -41.94 72.09 REMARK 500 GLN B 117 -50.92 -137.40 REMARK 500 CYS B 175 -42.62 75.53 REMARK 500 LYS C 62 0.33 84.53 REMARK 500 TYR C 115 -43.78 70.44 REMARK 500 GLN C 117 -51.74 -136.70 REMARK 500 CYS C 175 -43.07 74.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4PU A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4OZ A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4PU B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4OZ B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4PU C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4OZ C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ZHC RELATED DB: PDB REMARK 900 RELATED ID: 4ZHF RELATED DB: PDB REMARK 900 RELATED ID: 4ZHG RELATED DB: PDB REMARK 900 RELATED ID: 4ZHH RELATED DB: PDB DBREF 4ZHD A 1 178 UNP P80188 NGAL_HUMAN 21 198 DBREF 4ZHD B 1 178 UNP P80188 NGAL_HUMAN 21 198 DBREF 4ZHD C 1 178 UNP P80188 NGAL_HUMAN 21 198 SEQADV 4ZHD GLY A -1 UNP P80188 EXPRESSION TAG SEQADV 4ZHD SER A 0 UNP P80188 EXPRESSION TAG SEQADV 4ZHD SER A 87 UNP P80188 CYS 107 ENGINEERED MUTATION SEQADV 4ZHD GLY B -1 UNP P80188 EXPRESSION TAG SEQADV 4ZHD SER B 0 UNP P80188 EXPRESSION TAG SEQADV 4ZHD SER B 87 UNP P80188 CYS 107 ENGINEERED MUTATION SEQADV 4ZHD GLY C -1 UNP P80188 EXPRESSION TAG SEQADV 4ZHD SER C 0 UNP P80188 EXPRESSION TAG SEQADV 4ZHD SER C 87 UNP P80188 CYS 107 ENGINEERED MUTATION SEQRES 1 A 180 GLY SER GLN ASP SER THR SER ASP LEU ILE PRO ALA PRO SEQRES 2 A 180 PRO LEU SER LYS VAL PRO LEU GLN GLN ASN PHE GLN ASP SEQRES 3 A 180 ASN GLN PHE GLN GLY LYS TRP TYR VAL VAL GLY LEU ALA SEQRES 4 A 180 GLY ASN ALA ILE LEU ARG GLU ASP LYS ASP PRO GLN LYS SEQRES 5 A 180 MET TYR ALA THR ILE TYR GLU LEU LYS GLU ASP LYS SER SEQRES 6 A 180 TYR ASN VAL THR SER VAL LEU PHE ARG LYS LYS LYS CYS SEQRES 7 A 180 ASP TYR TRP ILE ARG THR PHE VAL PRO GLY SER GLN PRO SEQRES 8 A 180 GLY GLU PHE THR LEU GLY ASN ILE LYS SER TYR PRO GLY SEQRES 9 A 180 LEU THR SER TYR LEU VAL ARG VAL VAL SER THR ASN TYR SEQRES 10 A 180 ASN GLN HIS ALA MET VAL PHE PHE LYS LYS VAL SER GLN SEQRES 11 A 180 ASN ARG GLU TYR PHE LYS ILE THR LEU TYR GLY ARG THR SEQRES 12 A 180 LYS GLU LEU THR SER GLU LEU LYS GLU ASN PHE ILE ARG SEQRES 13 A 180 PHE SER LYS SER LEU GLY LEU PRO GLU ASN HIS ILE VAL SEQRES 14 A 180 PHE PRO VAL PRO ILE ASP GLN CYS ILE ASP GLY SEQRES 1 B 180 GLY SER GLN ASP SER THR SER ASP LEU ILE PRO ALA PRO SEQRES 2 B 180 PRO LEU SER LYS VAL PRO LEU GLN GLN ASN PHE GLN ASP SEQRES 3 B 180 ASN GLN PHE GLN GLY LYS TRP TYR VAL VAL GLY LEU ALA SEQRES 4 B 180 GLY ASN ALA ILE LEU ARG GLU ASP LYS ASP PRO GLN LYS SEQRES 5 B 180 MET TYR ALA THR ILE TYR GLU LEU LYS GLU ASP LYS SER SEQRES 6 B 180 TYR ASN VAL THR SER VAL LEU PHE ARG LYS LYS LYS CYS SEQRES 7 B 180 ASP TYR TRP ILE ARG THR PHE VAL PRO GLY SER GLN PRO SEQRES 8 B 180 GLY GLU PHE THR LEU GLY ASN ILE LYS SER TYR PRO GLY SEQRES 9 B 180 LEU THR SER TYR LEU VAL ARG VAL VAL SER THR ASN TYR SEQRES 10 B 180 ASN GLN HIS ALA MET VAL PHE PHE LYS LYS VAL SER GLN SEQRES 11 B 180 ASN ARG GLU TYR PHE LYS ILE THR LEU TYR GLY ARG THR SEQRES 12 B 180 LYS GLU LEU THR SER GLU LEU LYS GLU ASN PHE ILE ARG SEQRES 13 B 180 PHE SER LYS SER LEU GLY LEU PRO GLU ASN HIS ILE VAL SEQRES 14 B 180 PHE PRO VAL PRO ILE ASP GLN CYS ILE ASP GLY SEQRES 1 C 180 GLY SER GLN ASP SER THR SER ASP LEU ILE PRO ALA PRO SEQRES 2 C 180 PRO LEU SER LYS VAL PRO LEU GLN GLN ASN PHE GLN ASP SEQRES 3 C 180 ASN GLN PHE GLN GLY LYS TRP TYR VAL VAL GLY LEU ALA SEQRES 4 C 180 GLY ASN ALA ILE LEU ARG GLU ASP LYS ASP PRO GLN LYS SEQRES 5 C 180 MET TYR ALA THR ILE TYR GLU LEU LYS GLU ASP LYS SER SEQRES 6 C 180 TYR ASN VAL THR SER VAL LEU PHE ARG LYS LYS LYS CYS SEQRES 7 C 180 ASP TYR TRP ILE ARG THR PHE VAL PRO GLY SER GLN PRO SEQRES 8 C 180 GLY GLU PHE THR LEU GLY ASN ILE LYS SER TYR PRO GLY SEQRES 9 C 180 LEU THR SER TYR LEU VAL ARG VAL VAL SER THR ASN TYR SEQRES 10 C 180 ASN GLN HIS ALA MET VAL PHE PHE LYS LYS VAL SER GLN SEQRES 11 C 180 ASN ARG GLU TYR PHE LYS ILE THR LEU TYR GLY ARG THR SEQRES 12 C 180 LYS GLU LEU THR SER GLU LEU LYS GLU ASN PHE ILE ARG SEQRES 13 C 180 PHE SER LYS SER LEU GLY LEU PRO GLU ASN HIS ILE VAL SEQRES 14 C 180 PHE PRO VAL PRO ILE ASP GLN CYS ILE ASP GLY HET 4PU A 201 1 HET 4OZ A 202 20 HET GOL A 203 6 HET 4PU B 201 1 HET 4OZ B 202 20 HET 4PU C 201 1 HET 4OZ C 202 20 HET GOL C 203 6 HET SO4 C 204 5 HET SO4 C 205 5 HETNAM 4PU PLUTONIUM ION HETNAM 4OZ METHYL N-(2,3-DIHYDROXYBENZOYL)-O-FORMYL-L-SERINATE HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 4PU 3(PU 4+) FORMUL 5 4OZ 3(C12 H13 N O7) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 12 SO4 2(O4 S 2-) FORMUL 14 HOH *96(H2 O) HELIX 1 AA1 PRO A 12 VAL A 16 5 5 HELIX 2 AA2 ASN A 96 TYR A 100 5 5 HELIX 3 AA3 THR A 145 LEU A 159 1 15 HELIX 4 AA4 PRO A 162 ASN A 164 5 3 HELIX 5 AA5 PRO B 12 VAL B 16 5 5 HELIX 6 AA6 GLN B 23 GLN B 28 1 6 HELIX 7 AA7 ASN B 96 TYR B 100 5 5 HELIX 8 AA8 THR B 145 LEU B 159 1 15 HELIX 9 AA9 PRO B 162 ASN B 164 5 3 HELIX 10 AB1 PRO C 12 VAL C 16 5 5 HELIX 11 AB2 ASN C 96 TYR C 100 5 5 HELIX 12 AB3 THR C 145 LEU C 159 1 15 HELIX 13 AB4 PRO C 162 ASN C 164 5 3 SHEET 1 AA110 ILE A 166 VAL A 167 0 SHEET 2 AA110 GLY A 29 GLY A 38 -1 N LEU A 36 O VAL A 167 SHEET 3 AA110 ARG A 130 GLY A 139 -1 O GLY A 139 N TYR A 32 SHEET 4 AA110 HIS A 118 SER A 127 -1 N ALA A 119 O TYR A 138 SHEET 5 AA110 LEU A 103 THR A 113 -1 N ARG A 109 O PHE A 122 SHEET 6 AA110 GLU A 91 LEU A 94 -1 N PHE A 92 O VAL A 108 SHEET 7 AA110 LYS A 75 PRO A 85 -1 N VAL A 84 O THR A 93 SHEET 8 AA110 TYR A 64 ARG A 72 -1 N VAL A 66 O ARG A 81 SHEET 9 AA110 ALA A 53 LEU A 58 -1 N ILE A 55 O THR A 67 SHEET 10 AA110 GLY A 29 GLY A 38 -1 N GLY A 29 O TYR A 56 SHEET 1 AA210 ILE B 166 VAL B 167 0 SHEET 2 AA210 GLY B 29 GLY B 38 -1 N LEU B 36 O VAL B 167 SHEET 3 AA210 ARG B 130 GLY B 139 -1 O GLY B 139 N TYR B 32 SHEET 4 AA210 HIS B 118 SER B 127 -1 N ALA B 119 O TYR B 138 SHEET 5 AA210 LEU B 103 THR B 113 -1 N ARG B 109 O PHE B 122 SHEET 6 AA210 GLU B 91 LEU B 94 -1 N PHE B 92 O VAL B 108 SHEET 7 AA210 LYS B 75 PRO B 85 -1 N VAL B 84 O THR B 93 SHEET 8 AA210 TYR B 64 ARG B 72 -1 N LEU B 70 O ASP B 77 SHEET 9 AA210 ALA B 53 LEU B 58 -1 N GLU B 57 O ASN B 65 SHEET 10 AA210 GLY B 29 GLY B 38 -1 N GLY B 29 O TYR B 56 SHEET 1 AA310 ILE C 166 VAL C 167 0 SHEET 2 AA310 GLY C 29 GLY C 38 -1 N LEU C 36 O VAL C 167 SHEET 3 AA310 ARG C 130 GLY C 139 -1 O GLY C 139 N TYR C 32 SHEET 4 AA310 HIS C 118 SER C 127 -1 N ALA C 119 O TYR C 138 SHEET 5 AA310 LEU C 103 THR C 113 -1 N ARG C 109 O PHE C 122 SHEET 6 AA310 GLU C 91 LEU C 94 -1 N PHE C 92 O VAL C 108 SHEET 7 AA310 LYS C 75 PRO C 85 -1 N VAL C 84 O THR C 93 SHEET 8 AA310 TYR C 64 ARG C 72 -1 N LEU C 70 O ASP C 77 SHEET 9 AA310 ALA C 53 LEU C 58 -1 N ILE C 55 O THR C 67 SHEET 10 AA310 GLY C 29 GLY C 38 -1 N GLY C 29 O TYR C 56 SSBOND 1 CYS A 76 CYS A 175 1555 1555 2.07 SSBOND 2 CYS B 76 CYS B 175 1555 1555 2.04 SSBOND 3 CYS C 76 CYS C 175 1555 1555 2.09 SITE 1 AC1 1 4OZ A 202 SITE 1 AC2 6 ALA A 40 TYR A 106 PHE A 123 LYS A 125 SITE 2 AC2 6 4PU A 201 HOH A 312 SITE 1 AC3 3 ASN A 164 HIS A 165 LYS C 75 SITE 1 AC4 1 4OZ B 202 SITE 1 AC5 5 TYR B 106 PHE B 123 LYS B 125 4PU B 201 SITE 2 AC5 5 HOH B 305 SITE 1 AC6 1 4OZ C 202 SITE 1 AC7 8 ALA C 40 ILE C 41 TYR C 106 PHE C 123 SITE 2 AC7 8 LYS C 125 LYS C 134 4PU C 201 HOH C 311 SITE 1 AC8 3 GLN A 117 ASN C 114 HIS C 118 SITE 1 AC9 3 LYS A 75 ASN C 164 HIS C 165 SITE 1 AD1 5 ARG C 43 ASP C 45 LYS C 157 PRO C 162 SITE 2 AD1 5 GLU C 163 CRYST1 114.589 114.589 118.781 90.00 90.00 90.00 P 41 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008727 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008727 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008419 0.00000