HEADER FLUORESCENT PROTEIN 28-APR-15 4ZIO TITLE IRRADIATED STATE OF MCHERRY143AZF COMPND MOL_ID: 1; COMPND 2 MOLECULE: MCHERRY; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DISCOSOMA; SOURCE 3 ORGANISM_TAXID: 86599; SOURCE 4 GENE: MCHERRY; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MCHERRY, FLUORESCENCE, NON-NATURAL AMINO ACIDS, UV IRRADIATION, KEYWDS 2 PHOTOACTIVATION, PHOTODEACTIVATION, FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.C.REDDINGTON,S.DRIEZIS,A.M.HARTLEY,P.D.WATSON,P.J.RIZKALLAH, AUTHOR 2 D.D.JONES REVDAT 2 07-FEB-18 4ZIO 1 JRNL REVDAT 1 16-SEP-15 4ZIO 0 JRNL AUTH S.C.REDDINGTON,S.DRIEZIS,A.M.HARTLEY,P.D.WATSON, JRNL AUTH 2 P.J.RIZKALLAH,D.D.JONES JRNL TITL GENETICALLY ENCODED PHENYL AZIDE PHOTOCHEMISTRY DRIVES JRNL TITL 2 POSITIVE AND NEGATIVE FUNCTIONAL MODULATION OF A RED JRNL TITL 3 FLUORESCENT PROTEIN JRNL REF RSC ADV V. 5 77734 2015 JRNL REFN ESSN 2046-2069 JRNL DOI 10.1039/C5RA13552D REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 84.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 43925 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2258 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3221 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3290 REMARK 3 BIN FREE R VALUE SET COUNT : 176 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5229 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 45 REMARK 3 SOLVENT ATOMS : 194 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.86000 REMARK 3 B22 (A**2) : -0.56000 REMARK 3 B33 (A**2) : 2.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.201 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.188 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.181 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.987 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5406 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5032 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7262 ; 1.912 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11674 ; 0.849 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 642 ; 7.057 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 251 ;33.726 ;24.741 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 950 ;16.478 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;17.421 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 738 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5994 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1213 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2586 ; 1.888 ; 2.170 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2585 ; 1.855 ; 2.168 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3222 ; 2.900 ; 3.234 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 223 REMARK 3 ORIGIN FOR THE GROUP (A): 5.7520 -16.1030 -11.3310 REMARK 3 T TENSOR REMARK 3 T11: 0.1800 T22: 0.0943 REMARK 3 T33: 0.1131 T12: 0.0306 REMARK 3 T13: 0.0646 T23: 0.0992 REMARK 3 L TENSOR REMARK 3 L11: 3.2816 L22: 1.1534 REMARK 3 L33: 2.3939 L12: -1.3240 REMARK 3 L13: -1.9370 L23: 0.3879 REMARK 3 S TENSOR REMARK 3 S11: 0.4425 S12: 0.4423 S13: 0.4818 REMARK 3 S21: -0.1618 S22: -0.0505 S23: -0.0328 REMARK 3 S31: -0.2644 S32: -0.3384 S33: -0.3920 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 223 REMARK 3 ORIGIN FOR THE GROUP (A): 18.5600 10.8280 -33.4750 REMARK 3 T TENSOR REMARK 3 T11: 0.1609 T22: 0.0525 REMARK 3 T33: 0.3980 T12: -0.0154 REMARK 3 T13: 0.1811 T23: -0.0554 REMARK 3 L TENSOR REMARK 3 L11: 3.5492 L22: 1.7852 REMARK 3 L33: 1.5538 L12: 0.1937 REMARK 3 L13: -0.4070 L23: -0.9807 REMARK 3 S TENSOR REMARK 3 S11: -0.3331 S12: 0.1161 S13: -0.9261 REMARK 3 S21: -0.1407 S22: -0.1807 S23: -0.1587 REMARK 3 S31: 0.2625 S32: -0.0540 S33: 0.5138 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 4 C 223 REMARK 3 ORIGIN FOR THE GROUP (A): 2.2840 -13.7360 -54.4550 REMARK 3 T TENSOR REMARK 3 T11: 0.1387 T22: 0.3578 REMARK 3 T33: 0.3295 T12: -0.0857 REMARK 3 T13: -0.0553 T23: 0.0835 REMARK 3 L TENSOR REMARK 3 L11: 2.6599 L22: 2.1436 REMARK 3 L33: 1.4401 L12: -0.9809 REMARK 3 L13: -1.6405 L23: 0.2619 REMARK 3 S TENSOR REMARK 3 S11: 0.1922 S12: 0.4859 S13: 0.4473 REMARK 3 S21: -0.3027 S22: 0.0359 S23: -0.0462 REMARK 3 S31: -0.2015 S32: -0.0500 S33: -0.2281 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4ZIO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000209052. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.9-8.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97623 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46254 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 84.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 1.35500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SITTING DROP, PH 8, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.55500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.97000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.58500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.97000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.55500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.58500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL B 187 O HOH B 401 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 222 CB SER A 222 OG -0.082 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 125 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP A 132 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 55 35.04 -88.18 REMARK 500 TYR A 72 43.69 -98.39 REMARK 500 PRO B 55 33.46 -96.45 REMARK 500 TYR B 72 43.44 -101.91 REMARK 500 MET B 141 51.48 -143.62 REMARK 500 PRO C 55 31.79 -82.92 REMARK 500 TYR C 72 52.74 -103.66 REMARK 500 LYS C 138 52.39 34.77 REMARK 500 MET C 141 51.93 -140.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 302 DBREF 4ZIO A 6 224 UNP X5DSL3 X5DSL3_ANAMA 11 229 DBREF 4ZIO B 6 224 UNP X5DSL3 X5DSL3_ANAMA 11 229 DBREF 4ZIO C 6 224 UNP X5DSL3 X5DSL3_ANAMA 11 229 SEQADV 4ZIO CH6 A 66 UNP X5DSL3 MET 71 CHROMOPHORE SEQADV 4ZIO CH6 A 66 UNP X5DSL3 TYR 72 CHROMOPHORE SEQADV 4ZIO CH6 A 66 UNP X5DSL3 GLY 73 CHROMOPHORE SEQADV 4ZIO HOX A 143 UNP X5DSL3 TRP 148 CONFLICT SEQADV 4ZIO CH6 B 66 UNP X5DSL3 MET 71 CHROMOPHORE SEQADV 4ZIO CH6 B 66 UNP X5DSL3 TYR 72 CHROMOPHORE SEQADV 4ZIO CH6 B 66 UNP X5DSL3 GLY 73 CHROMOPHORE SEQADV 4ZIO HOX B 143 UNP X5DSL3 TRP 148 CONFLICT SEQADV 4ZIO CH6 C 66 UNP X5DSL3 MET 71 CHROMOPHORE SEQADV 4ZIO CH6 C 66 UNP X5DSL3 TYR 72 CHROMOPHORE SEQADV 4ZIO CH6 C 66 UNP X5DSL3 GLY 73 CHROMOPHORE SEQADV 4ZIO HOX C 143 UNP X5DSL3 TRP 148 CONFLICT SEQRES 1 A 217 ALA ILE ILE LYS GLU PHE MET ARG PHE LYS VAL HIS MET SEQRES 2 A 217 GLU GLY SER VAL ASN GLY HIS GLU PHE GLU ILE GLU GLY SEQRES 3 A 217 GLU GLY GLU GLY ARG PRO TYR GLU GLY THR GLN THR ALA SEQRES 4 A 217 LYS LEU LYS VAL THR LYS GLY GLY PRO LEU PRO PHE ALA SEQRES 5 A 217 TRP ASP ILE LEU SER PRO GLN PHE CH6 SER LYS ALA TYR SEQRES 6 A 217 VAL LYS HIS PRO ALA ASP ILE PRO ASP TYR LEU LYS LEU SEQRES 7 A 217 SER PHE PRO GLU GLY PHE LYS TRP GLU ARG VAL MET ASN SEQRES 8 A 217 PHE GLU ASP GLY GLY VAL VAL THR VAL THR GLN ASP SER SEQRES 9 A 217 SER LEU GLN ASP GLY GLU PHE ILE TYR LYS VAL LYS LEU SEQRES 10 A 217 ARG GLY THR ASN PHE PRO SER ASP GLY PRO VAL MET GLN SEQRES 11 A 217 LYS LYS THR MET GLY HOX GLU ALA SER SER GLU ARG MET SEQRES 12 A 217 TYR PRO GLU ASP GLY ALA LEU LYS GLY GLU ILE LYS GLN SEQRES 13 A 217 ARG LEU LYS LEU LYS ASP GLY GLY HIS TYR ASP ALA GLU SEQRES 14 A 217 VAL LYS THR THR TYR LYS ALA LYS LYS PRO VAL GLN LEU SEQRES 15 A 217 PRO GLY ALA TYR ASN VAL ASN ILE LYS LEU ASP ILE THR SEQRES 16 A 217 SER HIS ASN GLU ASP TYR THR ILE VAL GLU GLN TYR GLU SEQRES 17 A 217 ARG ALA GLU GLY ARG HIS SER THR GLY SEQRES 1 B 217 ALA ILE ILE LYS GLU PHE MET ARG PHE LYS VAL HIS MET SEQRES 2 B 217 GLU GLY SER VAL ASN GLY HIS GLU PHE GLU ILE GLU GLY SEQRES 3 B 217 GLU GLY GLU GLY ARG PRO TYR GLU GLY THR GLN THR ALA SEQRES 4 B 217 LYS LEU LYS VAL THR LYS GLY GLY PRO LEU PRO PHE ALA SEQRES 5 B 217 TRP ASP ILE LEU SER PRO GLN PHE CH6 SER LYS ALA TYR SEQRES 6 B 217 VAL LYS HIS PRO ALA ASP ILE PRO ASP TYR LEU LYS LEU SEQRES 7 B 217 SER PHE PRO GLU GLY PHE LYS TRP GLU ARG VAL MET ASN SEQRES 8 B 217 PHE GLU ASP GLY GLY VAL VAL THR VAL THR GLN ASP SER SEQRES 9 B 217 SER LEU GLN ASP GLY GLU PHE ILE TYR LYS VAL LYS LEU SEQRES 10 B 217 ARG GLY THR ASN PHE PRO SER ASP GLY PRO VAL MET GLN SEQRES 11 B 217 LYS LYS THR MET GLY HOX GLU ALA SER SER GLU ARG MET SEQRES 12 B 217 TYR PRO GLU ASP GLY ALA LEU LYS GLY GLU ILE LYS GLN SEQRES 13 B 217 ARG LEU LYS LEU LYS ASP GLY GLY HIS TYR ASP ALA GLU SEQRES 14 B 217 VAL LYS THR THR TYR LYS ALA LYS LYS PRO VAL GLN LEU SEQRES 15 B 217 PRO GLY ALA TYR ASN VAL ASN ILE LYS LEU ASP ILE THR SEQRES 16 B 217 SER HIS ASN GLU ASP TYR THR ILE VAL GLU GLN TYR GLU SEQRES 17 B 217 ARG ALA GLU GLY ARG HIS SER THR GLY SEQRES 1 C 217 ALA ILE ILE LYS GLU PHE MET ARG PHE LYS VAL HIS MET SEQRES 2 C 217 GLU GLY SER VAL ASN GLY HIS GLU PHE GLU ILE GLU GLY SEQRES 3 C 217 GLU GLY GLU GLY ARG PRO TYR GLU GLY THR GLN THR ALA SEQRES 4 C 217 LYS LEU LYS VAL THR LYS GLY GLY PRO LEU PRO PHE ALA SEQRES 5 C 217 TRP ASP ILE LEU SER PRO GLN PHE CH6 SER LYS ALA TYR SEQRES 6 C 217 VAL LYS HIS PRO ALA ASP ILE PRO ASP TYR LEU LYS LEU SEQRES 7 C 217 SER PHE PRO GLU GLY PHE LYS TRP GLU ARG VAL MET ASN SEQRES 8 C 217 PHE GLU ASP GLY GLY VAL VAL THR VAL THR GLN ASP SER SEQRES 9 C 217 SER LEU GLN ASP GLY GLU PHE ILE TYR LYS VAL LYS LEU SEQRES 10 C 217 ARG GLY THR ASN PHE PRO SER ASP GLY PRO VAL MET GLN SEQRES 11 C 217 LYS LYS THR MET GLY HOX GLU ALA SER SER GLU ARG MET SEQRES 12 C 217 TYR PRO GLU ASP GLY ALA LEU LYS GLY GLU ILE LYS GLN SEQRES 13 C 217 ARG LEU LYS LEU LYS ASP GLY GLY HIS TYR ASP ALA GLU SEQRES 14 C 217 VAL LYS THR THR TYR LYS ALA LYS LYS PRO VAL GLN LEU SEQRES 15 C 217 PRO GLY ALA TYR ASN VAL ASN ILE LYS LEU ASP ILE THR SEQRES 16 C 217 SER HIS ASN GLU ASP TYR THR ILE VAL GLU GLN TYR GLU SEQRES 17 C 217 ARG ALA GLU GLY ARG HIS SER THR GLY MODRES 4ZIO CH6 A 66 GLY CHROMOPHORE MODRES 4ZIO CH6 B 66 GLY CHROMOPHORE MODRES 4ZIO CH6 C 66 GLY CHROMOPHORE HET CH6 A 66 23 HET HOX A 143 12 HET CH6 B 66 23 HET HOX B 143 12 HET CH6 C 66 23 HET HOX C 143 12 HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 B 301 5 HET SO4 B 302 5 HET SO4 B 303 5 HET SO4 B 304 5 HET SO4 C 301 5 HET SO4 C 302 5 HETNAM CH6 {(4Z)-2-[(1S)-1-AMINO-3-(METHYLSULFANYL)PROPYL]-4-[(4- HETNAM 2 CH6 HYDROXYPHENYL)METHYLIDENE]-5-OXO-4,5-DIHYDRO-1H- HETNAM 3 CH6 IMIDAZOL-1-YL}ACETIC ACID HETNAM HOX 4-AMINO-L-PHENYLALANINE HETNAM SO4 SULFATE ION HETSYN CH6 CHROMOPHORE (MET-TYR-GLY) FORMUL 1 CH6 3(C16 H19 N3 O4 S) FORMUL 1 HOX 3(C9 H12 N2 O2) FORMUL 4 SO4 9(O4 S 2-) FORMUL 13 HOH *194(H2 O) HELIX 1 AA1 ALA A 57 PHE A 65 5 9 HELIX 2 AA2 ASP A 81 SER A 86 1 6 HELIX 3 AA3 ALA B 57 PHE B 65 5 9 HELIX 4 AA4 SER B 69 VAL B 73 5 5 HELIX 5 AA5 ASP B 81 SER B 86 1 6 HELIX 6 AA6 ALA C 57 PHE C 65 5 9 HELIX 7 AA7 ASP C 81 SER C 86 1 6 SHEET 1 AA113 THR A 140 HOX A 143 0 SHEET 2 AA113 ALA A 156 LEU A 167 -1 O LYS A 166 N MET A 141 SHEET 3 AA113 HIS A 172 ALA A 183 -1 O TYR A 181 N LEU A 157 SHEET 4 AA113 PHE A 91 PHE A 99 -1 N LYS A 92 O LYS A 182 SHEET 5 AA113 VAL A 104 GLN A 114 -1 O SER A 111 N PHE A 91 SHEET 6 AA113 GLU A 117 THR A 127 -1 O GLU A 117 N GLN A 114 SHEET 7 AA113 MET A 12 VAL A 22 1 N HIS A 17 O VAL A 122 SHEET 8 AA113 HIS A 25 ARG A 36 -1 O GLY A 31 N VAL A 16 SHEET 9 AA113 THR A 41 LYS A 50 -1 O THR A 43 N GLU A 34 SHEET 10 AA113 ILE A 210 HIS A 221 -1 O VAL A 211 N LEU A 46 SHEET 11 AA113 TYR A 193 HIS A 204 -1 N ASN A 194 O ARG A 220 SHEET 12 AA113 SER A 146 GLU A 153 -1 N GLU A 148 O VAL A 195 SHEET 13 AA113 ALA A 156 LEU A 167 -1 O ALA A 156 N GLU A 153 SHEET 1 AA213 THR B 140 HOX B 143 0 SHEET 2 AA213 ALA B 156 LEU B 167 -1 O LYS B 166 N GLY B 142 SHEET 3 AA213 HIS B 172 ALA B 183 -1 O TYR B 181 N LEU B 157 SHEET 4 AA213 PHE B 91 PHE B 99 -1 N LYS B 92 O LYS B 182 SHEET 5 AA213 VAL B 104 GLN B 114 -1 O SER B 111 N PHE B 91 SHEET 6 AA213 GLU B 117 THR B 127 -1 O ARG B 125 N THR B 106 SHEET 7 AA213 MET B 12 VAL B 22 1 N SER B 21 O GLY B 126 SHEET 8 AA213 HIS B 25 GLY B 35 -1 O ILE B 29 N MET B 18 SHEET 9 AA213 THR B 41 LYS B 50 -1 O THR B 43 N GLU B 34 SHEET 10 AA213 ILE B 210 HIS B 221 -1 O VAL B 211 N LEU B 46 SHEET 11 AA213 TYR B 193 HIS B 204 -1 N SER B 203 O GLU B 212 SHEET 12 AA213 SER B 146 GLU B 153 -1 N GLU B 148 O VAL B 195 SHEET 13 AA213 ALA B 156 LEU B 167 -1 O GLU B 160 N ARG B 149 SHEET 1 AA313 THR C 140 HOX C 143 0 SHEET 2 AA313 ALA C 156 LEU C 167 -1 O LYS C 166 N GLY C 142 SHEET 3 AA313 HIS C 172 ALA C 183 -1 O TYR C 173 N LEU C 165 SHEET 4 AA313 PHE C 91 PHE C 99 -1 N ASN C 98 O GLU C 176 SHEET 5 AA313 VAL C 104 GLN C 114 -1 O SER C 111 N PHE C 91 SHEET 6 AA313 GLU C 117 THR C 127 -1 O THR C 127 N VAL C 104 SHEET 7 AA313 MET C 12 VAL C 22 1 N SER C 21 O GLY C 126 SHEET 8 AA313 HIS C 25 ARG C 36 -1 O ILE C 29 N MET C 18 SHEET 9 AA313 THR C 41 LYS C 50 -1 O THR C 43 N GLU C 34 SHEET 10 AA313 ILE C 210 HIS C 221 -1 O VAL C 211 N LEU C 46 SHEET 11 AA313 TYR C 193 HIS C 204 -1 N ASN C 194 O ARG C 220 SHEET 12 AA313 SER C 146 GLU C 153 -1 N MET C 150 O TYR C 193 SHEET 13 AA313 ALA C 156 LEU C 167 -1 O LYS C 158 N TYR C 151 LINK C PHE A 65 N1 CH6 A 66 1555 1555 1.26 LINK C3 CH6 A 66 N SER A 69 1555 1555 1.25 LINK C GLY A 142 N HOX A 143 1555 1555 1.33 LINK C HOX A 143 N GLU A 144 1555 1555 1.33 LINK C PHE B 65 N1 CH6 B 66 1555 1555 1.28 LINK C3 CH6 B 66 N SER B 69 1555 1555 1.28 LINK C GLY B 142 N HOX B 143 1555 1555 1.33 LINK C HOX B 143 N GLU B 144 1555 1555 1.34 LINK C PHE C 65 N1 CH6 C 66 1555 1555 1.29 LINK C3 CH6 C 66 N SER C 69 1555 1555 1.25 LINK C GLY C 142 N HOX C 143 1555 1555 1.32 LINK C HOX C 143 N GLU C 144 1555 1555 1.32 CISPEP 1 GLY A 52 PRO A 53 0 -9.37 CISPEP 2 PHE A 87 PRO A 88 0 15.74 CISPEP 3 GLY B 52 PRO B 53 0 -1.68 CISPEP 4 PHE B 87 PRO B 88 0 13.83 CISPEP 5 GLY C 52 PRO C 53 0 -3.57 CISPEP 6 PHE C 87 PRO C 88 0 13.01 SITE 1 AC1 5 THR A 106 THR A 108 LYS A 123 LEU A 124 SITE 2 AC1 5 ARG A 125 SITE 1 AC2 6 GLU A 94 ARG A 95 VAL A 96 LYS A 178 SITE 2 AC2 6 THR A 179 THR A 180 SITE 1 AC3 7 ILE A 79 PRO A 80 ASN A 98 GLY A 191 SITE 2 AC3 7 ALA A 192 HOH A 437 HOH A 468 SITE 1 AC4 7 THR B 106 VAL B 107 THR B 108 LYS B 123 SITE 2 AC4 7 LEU B 124 ARG B 125 HOH B 456 SITE 1 AC5 6 GLU B 94 ARG B 95 VAL B 96 LYS B 178 SITE 2 AC5 6 THR B 179 THR B 180 SITE 1 AC6 7 ASP B 78 ILE B 79 PRO B 80 PRO B 190 SITE 2 AC6 7 GLY B 191 ALA B 192 ASN C 98 SITE 1 AC7 4 ASN B 196 ILE B 197 LYS B 198 ARG B 216 SITE 1 AC8 5 THR C 106 THR C 108 LYS C 123 LEU C 124 SITE 2 AC8 5 ARG C 125 SITE 1 AC9 6 THR C 108 GLN C 109 ASP C 110 LYS C 121 SITE 2 AC9 6 VAL C 122 LYS C 123 CRYST1 43.110 103.170 149.940 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023196 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009693 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006669 0.00000