HEADER TRANSCRIPTION 29-APR-15 4ZJR TITLE RORGAMMA IN COMPLEX WITH INVERSE AGONIST 48 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR RECEPTOR ROR-GAMMA; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: LIGAND BINDING DOMAIN (UNP RESIDUES 265-487); COMPND 5 SYNONYM: NUCLEAR RECEPTOR RZR-GAMMA,NUCLEAR RECEPTOR SUBFAMILY 1 COMPND 6 GROUP F MEMBER 3,RAR-RELATED ORPHAN RECEPTOR C,RETINOID-RELATED COMPND 7 ORPHAN RECEPTOR-GAMMA; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RORC, NR1F3, RORG, RZRG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS RORGAMMA LIGAND BINDING DOMAIN, INVERSE AGONIST, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR D.J.MARCOTTE REVDAT 4 27-SEP-23 4ZJR 1 REMARK REVDAT 3 01-NOV-17 4ZJR 1 SOURCE JRNL REMARK REVDAT 2 24-JUN-15 4ZJR 1 REMARK REVDAT 1 17-JUN-15 4ZJR 0 JRNL AUTH J.CHAO,I.ENYEDY,K.VAN VLOTEN,D.MARCOTTE,K.GUERTIN, JRNL AUTH 2 R.HUTCHINGS,N.POWELL,H.JONES,T.BOHNERT,C.C.PENG,L.SILVIAN, JRNL AUTH 3 V.S.HONG,K.LITTLE,D.BANERJEE,L.PENG,A.TAVERAS,J.L.VINEY, JRNL AUTH 4 J.FONTENOT JRNL TITL DISCOVERY OF BIARYL CARBOXYLAMIDES AS POTENT ROR GAMMA JRNL TITL 2 INVERSE AGONISTS. JRNL REF BIOORG.MED.CHEM.LETT. V. 25 2991 2015 JRNL REFN ESSN 1464-3405 JRNL PMID 26048806 JRNL DOI 10.1016/J.BMCL.2015.05.026 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 85.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 36584 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1922 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2728 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.1190 REMARK 3 BIN FREE R VALUE SET COUNT : 166 REMARK 3 BIN FREE R VALUE : 0.1870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7049 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 136 REMARK 3 SOLVENT ATOMS : 108 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.481 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.274 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.186 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.540 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7380 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7020 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9947 ; 1.840 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16051 ; 1.072 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 877 ; 6.541 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 355 ;34.865 ;23.070 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1336 ;18.937 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 63 ;19.358 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1079 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8310 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1849 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3520 ; 4.213 ; 4.762 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3519 ; 4.206 ; 4.761 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4397 ; 6.273 ; 7.141 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4ZJR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000209420. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38506 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 85.225 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 5.13000 REMARK 200 R SYM FOR SHELL (I) : 5.13000 REMARK 200 FOR SHELL : 0.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3B0W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0M SODIUM ACETATE, 0.2M SODIUM REMARK 280 CHLORIDE, 0.1M TRIS PH 8.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.25067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.50133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: SEC CONFIRMS MONOMERIC STATE REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 ARG A 482 REMARK 465 LEU A 483 REMARK 465 GLN A 484 REMARK 465 ILE A 485 REMARK 465 PHE A 486 REMARK 465 GLN A 487 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 ILE B 485 REMARK 465 PHE B 486 REMARK 465 GLN B 487 REMARK 465 GLY C 263 REMARK 465 GLN C 484 REMARK 465 ILE C 485 REMARK 465 PHE C 486 REMARK 465 GLN C 487 REMARK 465 ARG D 482 REMARK 465 LEU D 483 REMARK 465 GLN D 484 REMARK 465 ILE D 485 REMARK 465 PHE D 486 REMARK 465 GLN D 487 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 1 CB REMARK 470 GLU A 343 CG CD OE1 OE2 REMARK 470 GLN A 460 CG CD OE1 NE2 REMARK 470 LYS A 471 CG CD CE NZ REMARK 470 ARG A 473 CG CD NE CZ NH1 NH2 REMARK 470 ALA B 1 CB REMARK 470 SER B 266 OG REMARK 470 ARG B 282 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 469 CG CD CE NZ REMARK 470 LYS B 471 CG CD CE NZ REMARK 470 GLU B 481 CG CD OE1 OE2 REMARK 470 LEU B 483 CG CD1 CD2 REMARK 470 SER C 264 OG REMARK 470 ALA C 265 CB REMARK 470 GLU C 269 CG CD OE1 OE2 REMARK 470 ARG C 473 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 482 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 483 CG CD1 CD2 REMARK 470 ALA D 1 CB REMARK 470 GLU D 269 CG CD OE1 OE2 REMARK 470 ARG D 288 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 295 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR C 308 OE1 GLU C 379 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 367 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 GLN B 286 CB - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 LEU C 287 N - CA - CB ANGL. DEV. = 15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 266 -167.32 -77.33 REMARK 500 GLN A 286 -60.62 66.25 REMARK 500 LYS A 311 171.40 -59.45 REMARK 500 CYS A 366 -30.42 -39.91 REMARK 500 ASN A 373 18.46 -141.07 REMARK 500 GLU A 379 63.83 35.32 REMARK 500 GLU A 435 56.40 -118.80 REMARK 500 GLN A 460 -27.36 -39.93 REMARK 500 GLN B 286 -4.82 71.54 REMARK 500 LEU B 287 80.46 -163.86 REMARK 500 ARG B 288 128.92 -34.49 REMARK 500 SER B 297 -0.36 -56.61 REMARK 500 THR B 306 -38.83 -35.27 REMARK 500 ARG B 337 -17.11 -49.29 REMARK 500 SER B 339 123.00 -35.92 REMARK 500 PHE B 378 125.75 -179.59 REMARK 500 GLU B 435 58.07 -144.56 REMARK 500 LYS B 436 -36.64 -35.24 REMARK 500 ARG B 482 94.14 -52.61 REMARK 500 LEU B 483 -158.84 -138.89 REMARK 500 GLN C 286 -9.75 71.36 REMARK 500 LEU C 287 102.62 -168.25 REMARK 500 GLU C 435 57.23 -97.11 REMARK 500 GLN C 460 -29.66 -39.15 REMARK 500 LYS C 469 -12.43 -46.12 REMARK 500 GLU C 481 70.80 -67.58 REMARK 500 GLN D 286 -62.99 72.25 REMARK 500 SER D 339 125.59 -36.48 REMARK 500 GLU D 379 63.71 64.38 REMARK 500 GLN D 434 -64.52 -95.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA D 1 SER D 266 140.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 628 DISTANCE = 6.13 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4P3 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4P3 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4P3 C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4P3 D 501 DBREF 4ZJR A 1 487 UNP P51449 RORG_HUMAN 265 487 DBREF 4ZJR B 1 487 UNP P51449 RORG_HUMAN 265 487 DBREF 4ZJR C 265 487 UNP P51449 RORG_HUMAN 265 487 DBREF 4ZJR D 1 487 UNP P51449 RORG_HUMAN 265 487 SEQADV 4ZJR GLY A -1 UNP P51449 EXPRESSION TAG SEQADV 4ZJR SER A 0 UNP P51449 EXPRESSION TAG SEQADV 4ZJR GLY B -1 UNP P51449 EXPRESSION TAG SEQADV 4ZJR SER B 0 UNP P51449 EXPRESSION TAG SEQADV 4ZJR GLY C 263 UNP P51449 EXPRESSION TAG SEQADV 4ZJR SER C 264 UNP P51449 EXPRESSION TAG SEQADV 4ZJR GLY D -1 UNP P51449 EXPRESSION TAG SEQADV 4ZJR SER D 0 UNP P51449 EXPRESSION TAG SEQRES 1 A 225 GLY SER ALA SER LEU THR GLU ILE GLU HIS LEU VAL GLN SEQRES 2 A 225 SER VAL CYS LYS SER TYR ARG GLU THR CYS GLN LEU ARG SEQRES 3 A 225 LEU GLU ASP LEU LEU ARG GLN ARG SER ASN ILE PHE SER SEQRES 4 A 225 ARG GLU GLU VAL THR GLY TYR GLN ARG LYS SER MET TRP SEQRES 5 A 225 GLU MET TRP GLU ARG CYS ALA HIS HIS LEU THR GLU ALA SEQRES 6 A 225 ILE GLN TYR VAL VAL GLU PHE ALA LYS ARG LEU SER GLY SEQRES 7 A 225 PHE MET GLU LEU CYS GLN ASN ASP GLN ILE VAL LEU LEU SEQRES 8 A 225 LYS ALA GLY ALA MET GLU VAL VAL LEU VAL ARG MET CYS SEQRES 9 A 225 ARG ALA TYR ASN ALA ASP ASN ARG THR VAL PHE PHE GLU SEQRES 10 A 225 GLY LYS TYR GLY GLY MET GLU LEU PHE ARG ALA LEU GLY SEQRES 11 A 225 CYS SER GLU LEU ILE SER SER ILE PHE ASP PHE SER HIS SEQRES 12 A 225 SER LEU SER ALA LEU HIS PHE SER GLU ASP GLU ILE ALA SEQRES 13 A 225 LEU TYR THR ALA LEU VAL LEU ILE ASN ALA HIS ARG PRO SEQRES 14 A 225 GLY LEU GLN GLU LYS ARG LYS VAL GLU GLN LEU GLN TYR SEQRES 15 A 225 ASN LEU GLU LEU ALA PHE HIS HIS HIS LEU CYS LYS THR SEQRES 16 A 225 HIS ARG GLN SER ILE LEU ALA LYS LEU PRO PRO LYS GLY SEQRES 17 A 225 LYS LEU ARG SER LEU CYS SER GLN HIS VAL GLU ARG LEU SEQRES 18 A 225 GLN ILE PHE GLN SEQRES 1 B 225 GLY SER ALA SER LEU THR GLU ILE GLU HIS LEU VAL GLN SEQRES 2 B 225 SER VAL CYS LYS SER TYR ARG GLU THR CYS GLN LEU ARG SEQRES 3 B 225 LEU GLU ASP LEU LEU ARG GLN ARG SER ASN ILE PHE SER SEQRES 4 B 225 ARG GLU GLU VAL THR GLY TYR GLN ARG LYS SER MET TRP SEQRES 5 B 225 GLU MET TRP GLU ARG CYS ALA HIS HIS LEU THR GLU ALA SEQRES 6 B 225 ILE GLN TYR VAL VAL GLU PHE ALA LYS ARG LEU SER GLY SEQRES 7 B 225 PHE MET GLU LEU CYS GLN ASN ASP GLN ILE VAL LEU LEU SEQRES 8 B 225 LYS ALA GLY ALA MET GLU VAL VAL LEU VAL ARG MET CYS SEQRES 9 B 225 ARG ALA TYR ASN ALA ASP ASN ARG THR VAL PHE PHE GLU SEQRES 10 B 225 GLY LYS TYR GLY GLY MET GLU LEU PHE ARG ALA LEU GLY SEQRES 11 B 225 CYS SER GLU LEU ILE SER SER ILE PHE ASP PHE SER HIS SEQRES 12 B 225 SER LEU SER ALA LEU HIS PHE SER GLU ASP GLU ILE ALA SEQRES 13 B 225 LEU TYR THR ALA LEU VAL LEU ILE ASN ALA HIS ARG PRO SEQRES 14 B 225 GLY LEU GLN GLU LYS ARG LYS VAL GLU GLN LEU GLN TYR SEQRES 15 B 225 ASN LEU GLU LEU ALA PHE HIS HIS HIS LEU CYS LYS THR SEQRES 16 B 225 HIS ARG GLN SER ILE LEU ALA LYS LEU PRO PRO LYS GLY SEQRES 17 B 225 LYS LEU ARG SER LEU CYS SER GLN HIS VAL GLU ARG LEU SEQRES 18 B 225 GLN ILE PHE GLN SEQRES 1 C 225 GLY SER ALA SER LEU THR GLU ILE GLU HIS LEU VAL GLN SEQRES 2 C 225 SER VAL CYS LYS SER TYR ARG GLU THR CYS GLN LEU ARG SEQRES 3 C 225 LEU GLU ASP LEU LEU ARG GLN ARG SER ASN ILE PHE SER SEQRES 4 C 225 ARG GLU GLU VAL THR GLY TYR GLN ARG LYS SER MET TRP SEQRES 5 C 225 GLU MET TRP GLU ARG CYS ALA HIS HIS LEU THR GLU ALA SEQRES 6 C 225 ILE GLN TYR VAL VAL GLU PHE ALA LYS ARG LEU SER GLY SEQRES 7 C 225 PHE MET GLU LEU CYS GLN ASN ASP GLN ILE VAL LEU LEU SEQRES 8 C 225 LYS ALA GLY ALA MET GLU VAL VAL LEU VAL ARG MET CYS SEQRES 9 C 225 ARG ALA TYR ASN ALA ASP ASN ARG THR VAL PHE PHE GLU SEQRES 10 C 225 GLY LYS TYR GLY GLY MET GLU LEU PHE ARG ALA LEU GLY SEQRES 11 C 225 CYS SER GLU LEU ILE SER SER ILE PHE ASP PHE SER HIS SEQRES 12 C 225 SER LEU SER ALA LEU HIS PHE SER GLU ASP GLU ILE ALA SEQRES 13 C 225 LEU TYR THR ALA LEU VAL LEU ILE ASN ALA HIS ARG PRO SEQRES 14 C 225 GLY LEU GLN GLU LYS ARG LYS VAL GLU GLN LEU GLN TYR SEQRES 15 C 225 ASN LEU GLU LEU ALA PHE HIS HIS HIS LEU CYS LYS THR SEQRES 16 C 225 HIS ARG GLN SER ILE LEU ALA LYS LEU PRO PRO LYS GLY SEQRES 17 C 225 LYS LEU ARG SER LEU CYS SER GLN HIS VAL GLU ARG LEU SEQRES 18 C 225 GLN ILE PHE GLN SEQRES 1 D 225 GLY SER ALA SER LEU THR GLU ILE GLU HIS LEU VAL GLN SEQRES 2 D 225 SER VAL CYS LYS SER TYR ARG GLU THR CYS GLN LEU ARG SEQRES 3 D 225 LEU GLU ASP LEU LEU ARG GLN ARG SER ASN ILE PHE SER SEQRES 4 D 225 ARG GLU GLU VAL THR GLY TYR GLN ARG LYS SER MET TRP SEQRES 5 D 225 GLU MET TRP GLU ARG CYS ALA HIS HIS LEU THR GLU ALA SEQRES 6 D 225 ILE GLN TYR VAL VAL GLU PHE ALA LYS ARG LEU SER GLY SEQRES 7 D 225 PHE MET GLU LEU CYS GLN ASN ASP GLN ILE VAL LEU LEU SEQRES 8 D 225 LYS ALA GLY ALA MET GLU VAL VAL LEU VAL ARG MET CYS SEQRES 9 D 225 ARG ALA TYR ASN ALA ASP ASN ARG THR VAL PHE PHE GLU SEQRES 10 D 225 GLY LYS TYR GLY GLY MET GLU LEU PHE ARG ALA LEU GLY SEQRES 11 D 225 CYS SER GLU LEU ILE SER SER ILE PHE ASP PHE SER HIS SEQRES 12 D 225 SER LEU SER ALA LEU HIS PHE SER GLU ASP GLU ILE ALA SEQRES 13 D 225 LEU TYR THR ALA LEU VAL LEU ILE ASN ALA HIS ARG PRO SEQRES 14 D 225 GLY LEU GLN GLU LYS ARG LYS VAL GLU GLN LEU GLN TYR SEQRES 15 D 225 ASN LEU GLU LEU ALA PHE HIS HIS HIS LEU CYS LYS THR SEQRES 16 D 225 HIS ARG GLN SER ILE LEU ALA LYS LEU PRO PRO LYS GLY SEQRES 17 D 225 LYS LEU ARG SER LEU CYS SER GLN HIS VAL GLU ARG LEU SEQRES 18 D 225 GLN ILE PHE GLN HET 4P3 A 501 34 HET 4P3 B 501 34 HET 4P3 C 501 34 HET 4P3 D 501 34 HETNAM 4P3 6-CHLORO-4'-[(2-CHLORO-6-FLUOROBENZOYL)(METHYL)AMINO]- HETNAM 2 4P3 3'-(2,2,2-TRIFLUOROETHOXY)BIPHENYL-3-CARBOXAMIDE FORMUL 5 4P3 4(C23 H16 CL2 F4 N2 O3) FORMUL 9 HOH *108(H2 O) HELIX 1 AA1 SER A 266 CYS A 285 1 20 HELIX 2 AA2 ARG A 288 GLN A 295 1 8 HELIX 3 AA3 SER A 301 LYS A 311 1 11 HELIX 4 AA4 SER A 312 LEU A 338 1 27 HELIX 5 AA5 CYS A 345 CYS A 366 1 22 HELIX 6 AA6 GLY A 384 GLY A 392 5 9 HELIX 7 AA7 CYS A 393 ALA A 409 1 17 HELIX 8 AA8 SER A 413 ILE A 426 1 14 HELIX 9 AA9 GLU A 435 THR A 457 1 23 HELIX 10 AB1 ARG A 459 LEU A 463 5 5 HELIX 11 AB2 PRO A 468 GLU A 481 1 14 HELIX 12 AB3 SER B 266 CYS B 285 1 20 HELIX 13 AB4 ARG B 288 GLN B 295 1 8 HELIX 14 AB5 SER B 301 ARG B 310 1 10 HELIX 15 AB6 SER B 312 ARG B 337 1 26 HELIX 16 AB7 GLY B 340 LEU B 344 5 5 HELIX 17 AB8 CYS B 345 CYS B 366 1 22 HELIX 18 AB9 GLY B 384 GLY B 392 5 9 HELIX 19 AC1 CYS B 393 LEU B 410 1 18 HELIX 20 AC2 SER B 413 ILE B 426 1 14 HELIX 21 AC3 GLU B 435 THR B 457 1 23 HELIX 22 AC4 SER B 461 LEU B 466 1 6 HELIX 23 AC5 PRO B 468 VAL B 480 1 13 HELIX 24 AC6 SER C 266 GLU C 283 1 18 HELIX 25 AC7 ARG C 288 GLN C 295 1 8 HELIX 26 AC8 SER C 301 ARG C 310 1 10 HELIX 27 AC9 SER C 312 ARG C 337 1 26 HELIX 28 AD1 CYS C 345 CYS C 366 1 22 HELIX 29 AD2 GLY C 384 GLY C 392 5 9 HELIX 30 AD3 CYS C 393 LEU C 410 1 18 HELIX 31 AD4 SER C 413 ILE C 426 1 14 HELIX 32 AD5 GLU C 435 THR C 457 1 23 HELIX 33 AD6 ARG C 459 LEU C 466 5 8 HELIX 34 AD7 PRO C 468 GLU C 481 1 14 HELIX 35 AD8 SER D 266 CYS D 285 1 20 HELIX 36 AD9 ARG D 288 ARG D 296 1 9 HELIX 37 AE1 SER D 301 LYS D 311 1 11 HELIX 38 AE2 SER D 312 LEU D 338 1 27 HELIX 39 AE3 GLY D 340 LEU D 344 5 5 HELIX 40 AE4 CYS D 345 MET D 365 1 21 HELIX 41 AE5 GLY D 384 GLY D 392 5 9 HELIX 42 AE6 CYS D 393 LEU D 410 1 18 HELIX 43 AE7 SER D 413 ILE D 426 1 14 HELIX 44 AE8 GLU D 435 THR D 457 1 23 HELIX 45 AE9 ARG D 459 ALA D 464 5 6 HELIX 46 AF1 PRO D 468 GLU D 481 1 14 SHEET 1 AA1 3 TYR A 369 ASN A 370 0 SHEET 2 AA1 3 THR A 375 PHE A 378 -1 O THR A 375 N ASN A 370 SHEET 3 AA1 3 LYS A 381 GLY A 383 -1 O LYS A 381 N PHE A 378 SHEET 1 AA2 3 TYR B 369 ASN B 370 0 SHEET 2 AA2 3 THR B 375 PHE B 378 -1 O THR B 375 N ASN B 370 SHEET 3 AA2 3 LYS B 381 GLY B 383 -1 O GLY B 383 N VAL B 376 SHEET 1 AA3 3 TYR C 369 ASN C 370 0 SHEET 2 AA3 3 THR C 375 PHE C 378 -1 O THR C 375 N ASN C 370 SHEET 3 AA3 3 LYS C 381 GLY C 383 -1 O LYS C 381 N PHE C 378 SHEET 1 AA4 3 TYR D 369 ASN D 370 0 SHEET 2 AA4 3 THR D 375 PHE D 378 -1 O THR D 375 N ASN D 370 SHEET 3 AA4 3 LYS D 381 GLY D 383 -1 O LYS D 381 N PHE D 378 SITE 1 AC1 12 TRP A 317 CYS A 320 HIS A 323 LEU A 324 SITE 2 AC1 12 PHE A 378 GLU A 379 PHE A 388 LEU A 396 SITE 3 AC1 12 ILE A 397 ILE A 400 PHE A 401 HIS A 479 SITE 1 AC2 14 TRP B 317 CYS B 320 HIS B 323 LEU B 324 SITE 2 AC2 14 MET B 365 VAL B 376 PHE B 378 GLU B 379 SITE 3 AC2 14 PHE B 388 LEU B 396 ILE B 397 ILE B 400 SITE 4 AC2 14 HIS B 479 HOH B 607 SITE 1 AC3 12 CYS C 320 HIS C 323 VAL C 376 GLU C 379 SITE 2 AC3 12 PHE C 388 LEU C 391 CYS C 393 LEU C 396 SITE 3 AC3 12 ILE C 397 ILE C 400 PHE C 401 HIS C 479 SITE 1 AC4 13 CYS D 320 HIS D 323 MET D 365 VAL D 376 SITE 2 AC4 13 PHE D 377 PHE D 378 GLU D 379 PHE D 388 SITE 3 AC4 13 LEU D 396 ILE D 397 ILE D 400 PHE D 401 SITE 4 AC4 13 HIS D 479 CRYST1 98.409 98.409 129.752 90.00 90.00 120.00 P 31 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010162 0.005867 0.000000 0.00000 SCALE2 0.000000 0.011734 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007707 0.00000