HEADER VIRAL PROTEIN/CYTOKINE 30-APR-15 4ZKB TITLE THE CHEMOKINE BINDING PROTEIN OF ORF VIRUS COMPLEXED WITH CCL3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHEMOKINE BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 17-286; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: C-C MOTIF CHEMOKINE 3; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 24-92; COMPND 10 SYNONYM: G0/G1 SWITCH REGULATORY PROTEIN 19-1,MACROPHAGE INFLAMMATORY COMPND 11 PROTEIN 1-ALPHA,MIP-1-ALPHA,PAT 464.1,SIS-BETA,SMALL-INDUCIBLE COMPND 12 CYTOKINE A3,TONSILLAR LYMPHOCYTE LD78 ALPHA PROTEIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORF VIRUS (STRAIN NZ2); SOURCE 3 ORGANISM_COMMON: ORFV; SOURCE 4 ORGANISM_TAXID: 10259; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK 293-6E; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTT5; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: CCL3, G0S19-1, MIP1A, SCYA3; SOURCE 16 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 17 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM_CELL_LINE: HEK 293-6E; SOURCE 20 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 21 EXPRESSION_SYSTEM_PLASMID: PTT5 KEYWDS COMPLEX, ORF CHEMOKINE BINDING PROTEIN, CCL3, VIRAL PROTEIN-CYTOKINE KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.M.KNAPP,Y.NAKATANI,K.L.KRAUSE REVDAT 5 27-SEP-23 4ZKB 1 HETSYN REVDAT 4 29-JUL-20 4ZKB 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 13-JUN-18 4ZKB 1 TITLE SOURCE KEYWDS JRNL REVDAT 3 2 1 REMARK REVDAT 2 15-JUL-15 4ZKB 1 JRNL REVDAT 1 08-JUL-15 4ZKB 0 JRNL AUTH R.M.COUNAGO,K.M.KNAPP,Y.NAKATANI,S.B.FLEMING,M.CORBETT, JRNL AUTH 2 L.M.WISE,A.A.MERCER,K.L.KRAUSE JRNL TITL STRUCTURES OF ORF VIRUS CHEMOKINE BINDING PROTEIN IN COMPLEX JRNL TITL 2 WITH HOST CHEMOKINES REVEAL CLUES TO BROAD BINDING JRNL TITL 3 SPECIFICITY. JRNL REF STRUCTURE V. 23 1199 2015 JRNL REFN ISSN 0969-2126 JRNL PMID 26095031 JRNL DOI 10.1016/J.STR.2015.04.023 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 12641 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.270 REMARK 3 R VALUE (WORKING SET) : 0.268 REMARK 3 FREE R VALUE : 0.323 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 692 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 902 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3750 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.4240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1852 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 67 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 78.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.08000 REMARK 3 B22 (A**2) : 2.08000 REMARK 3 B33 (A**2) : -4.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.492 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.372 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.353 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 41.375 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.903 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.837 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1959 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1675 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2684 ; 1.444 ; 2.004 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3811 ; 0.795 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 262 ; 7.484 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 67 ;34.426 ;24.328 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 241 ;18.649 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;16.997 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 328 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2247 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 406 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1063 ; 1.587 ; 4.302 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1062 ; 1.587 ; 4.300 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1320 ; 2.635 ; 6.449 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1321 ; 2.634 ; 6.451 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 896 ; 2.659 ; 4.730 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 897 ; 2.657 ; 4.731 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1364 ; 4.285 ; 7.012 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2176 ; 5.335 ;36.541 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2177 ; 5.334 ;36.552 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 269 REMARK 3 ORIGIN FOR THE GROUP (A): -27.4148 -13.6715 12.0863 REMARK 3 T TENSOR REMARK 3 T11: 0.0273 T22: 0.3164 REMARK 3 T33: 0.0789 T12: 0.0475 REMARK 3 T13: -0.0304 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 2.0954 L22: 2.4897 REMARK 3 L33: 7.9993 L12: 0.3791 REMARK 3 L13: -1.1720 L23: -1.0195 REMARK 3 S TENSOR REMARK 3 S11: 0.0397 S12: -0.4371 S13: 0.0142 REMARK 3 S21: -0.1541 S22: -0.0269 S23: 0.4306 REMARK 3 S31: -0.1817 S32: -0.6727 S33: -0.0128 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 64 REMARK 3 ORIGIN FOR THE GROUP (A): -24.6106 5.4826 19.8154 REMARK 3 T TENSOR REMARK 3 T11: 0.8962 T22: 0.7882 REMARK 3 T33: 0.4088 T12: 0.1602 REMARK 3 T13: -0.0728 T23: -0.2088 REMARK 3 L TENSOR REMARK 3 L11: 6.6921 L22: 5.7028 REMARK 3 L33: 7.7906 L12: 1.6936 REMARK 3 L13: -2.0456 L23: 0.5480 REMARK 3 S TENSOR REMARK 3 S11: 0.1814 S12: -1.0155 S13: 1.1418 REMARK 3 S21: 0.2215 S22: -0.6392 S23: -0.1688 REMARK 3 S31: -1.6641 S32: -0.1558 S33: 0.4578 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4ZKB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000209403. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 93.2 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95369 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13416 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 47.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.75700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4P5I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM SODIUM TARTRATE REMARK 280 TETRAHYDRATE, 0.1M SODIUM CITRATE TRIBASIC DIHYDRATE PH5.6, 2.0M REMARK 280 AMMONIUM CITRATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.01000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 139.51500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.50500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 139.51500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.50500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 93.01000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 PRO A 2 REMARK 465 LEU A 3 REMARK 465 LEU A 4 REMARK 465 GLU A 5 REMARK 465 SER A 6 REMARK 465 GLN A 7 REMARK 465 ARG A 8 REMARK 465 SER A 9 REMARK 465 ASN A 10 REMARK 465 GLU A 158 REMARK 465 PRO A 159 REMARK 465 THR A 160 REMARK 465 THR A 161 REMARK 465 THR A 162 REMARK 465 PRO A 163 REMARK 465 PRO A 164 REMARK 465 SER A 165 REMARK 465 PRO A 166 REMARK 465 VAL A 167 REMARK 465 THR A 168 REMARK 465 THR A 169 REMARK 465 THR A 170 REMARK 465 LEU A 171 REMARK 465 SER A 172 REMARK 465 SER A 173 REMARK 465 THR A 174 REMARK 465 THR A 175 REMARK 465 PRO A 176 REMARK 465 ASP A 177 REMARK 465 LEU A 178 REMARK 465 ASN A 179 REMARK 465 GLU A 180 REMARK 465 GLU A 181 REMARK 465 ASN A 182 REMARK 465 THR A 183 REMARK 465 GLU A 184 REMARK 465 ASN A 185 REMARK 465 THR A 186 REMARK 465 PRO A 187 REMARK 465 THR A 188 REMARK 465 THR A 189 REMARK 465 THR A 190 REMARK 465 GLY A 191 REMARK 465 ALA A 192 REMARK 465 SER A 193 REMARK 465 VAL A 194 REMARK 465 ASP A 195 REMARK 465 ARG A 196 REMARK 465 LYS A 197 REMARK 465 ARG A 198 REMARK 465 ASN A 270 REMARK 465 GLU A 271 REMARK 465 ASN A 272 REMARK 465 LEU A 273 REMARK 465 TYR A 274 REMARK 465 PHE A 275 REMARK 465 GLN A 276 REMARK 465 SER B 1 REMARK 465 LEU B 2 REMARK 465 ALA B 3 REMARK 465 ALA B 4 REMARK 465 ASP B 5 REMARK 465 THR B 6 REMARK 465 PRO B 7 REMARK 465 GLN B 21 REMARK 465 ASN B 22 REMARK 465 PHE B 23 REMARK 465 ILE B 24 REMARK 465 ALA B 25 REMARK 465 LYS B 44 REMARK 465 ARG B 45 REMARK 465 SER B 46 REMARK 465 LEU B 65 REMARK 465 GLU B 66 REMARK 465 LEU B 67 REMARK 465 SER B 68 REMARK 465 ALA B 69 REMARK 465 HIS B 70 REMARK 465 HIS B 71 REMARK 465 HIS B 72 REMARK 465 HIS B 73 REMARK 465 HIS B 74 REMARK 465 HIS B 75 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 ASN A 16 CG OD1 ND2 REMARK 470 SER A 19 OG REMARK 470 THR A 20 OG1 CG2 REMARK 470 ASN A 22 CG OD1 ND2 REMARK 470 ASP A 23 CG OD1 OD2 REMARK 470 GLU A 58 CG CD OE1 OE2 REMARK 470 ILE A 60 CG1 CG2 CD1 REMARK 470 GLU A 61 CG CD OE1 OE2 REMARK 470 GLU A 62 CG CD OE1 OE2 REMARK 470 SER A 63 OG REMARK 470 THR A 64 OG1 CG2 REMARK 470 LYS A 66 CG CD CE NZ REMARK 470 LYS A 122 CG CD CE NZ REMARK 470 GLN A 123 CG CD OE1 NE2 REMARK 470 LYS A 136 CG CD CE NZ REMARK 470 GLU A 140 CG CD OE1 OE2 REMARK 470 ASP A 151 CG OD1 OD2 REMARK 470 ASN A 152 CG OD1 ND2 REMARK 470 LYS A 154 CG CD CE NZ REMARK 470 GLU A 157 CG CD OE1 OE2 REMARK 470 ASN A 199 CG OD1 ND2 REMARK 470 TYR A 230 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 231 CG CD CE NZ REMARK 470 GLN A 232 CG CD OE1 NE2 REMARK 470 GLU A 233 CG CD OE1 OE2 REMARK 470 LYS A 239 CG CD CE NZ REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 LYS A 249 CG CD CE NZ REMARK 470 LYS A 250 CG CD CE NZ REMARK 470 LYS A 253 CG CD CE NZ REMARK 470 TYR B 14 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN B 18 CG CD OE1 NE2 REMARK 470 ILE B 19 CG1 CG2 CD1 REMARK 470 ASP B 26 CG OD1 OD2 REMARK 470 TYR B 27 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE B 28 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 29 CG CD OE1 OE2 REMARK 470 THR B 30 OG1 CG2 REMARK 470 SER B 31 OG REMARK 470 SER B 32 OG REMARK 470 GLN B 33 CG CD OE1 NE2 REMARK 470 SER B 35 OG REMARK 470 LYS B 36 CG CD CE NZ REMARK 470 VAL B 39 CG1 CG2 REMARK 470 ILE B 40 CG1 CG2 CD1 REMARK 470 PHE B 41 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU B 42 CG CD1 CD2 REMARK 470 THR B 43 OG1 CG2 REMARK 470 VAL B 49 CG1 CG2 REMARK 470 ASP B 52 CG OD1 OD2 REMARK 470 SER B 54 OG REMARK 470 GLU B 55 CG CD OE1 OE2 REMARK 470 GLU B 56 CG CD OE1 OE2 REMARK 470 TRP B 57 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 57 CZ3 CH2 REMARK 470 VAL B 58 CG1 CG2 REMARK 470 GLN B 59 CG CD OE1 NE2 REMARK 470 LYS B 60 CG CD CE NZ REMARK 470 TYR B 61 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL B 62 CG1 CG2 REMARK 470 ASP B 64 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL B 58 N VAL B 62 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 124 -173.95 -67.96 REMARK 500 CYS A 150 79.08 -106.51 REMARK 500 ASN A 152 -26.04 78.23 REMARK 500 ASP A 229 -0.69 -58.74 REMARK 500 ASP A 254 70.05 -151.44 REMARK 500 ASN A 267 129.31 -35.93 REMARK 500 SER B 31 23.99 -55.42 REMARK 500 GLN B 33 -98.33 65.31 REMARK 500 CYS B 34 170.99 69.33 REMARK 500 ASP B 52 -164.36 -124.90 REMARK 500 SER B 54 -54.80 -156.86 REMARK 500 GLU B 55 -46.01 -154.83 REMARK 500 VAL B 58 -75.02 -48.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ZK9 RELATED DB: PDB REMARK 900 RELATED ID: 4ZKC RELATED DB: PDB DBREF 4ZKB A 1 270 UNP Q2F862 Q2F862_ORFV 17 286 DBREF 4ZKB B 1 69 UNP P10147 CCL3_HUMAN 24 92 SEQADV 4ZKB GLU A 271 UNP Q2F862 EXPRESSION TAG SEQADV 4ZKB ASN A 272 UNP Q2F862 EXPRESSION TAG SEQADV 4ZKB LEU A 273 UNP Q2F862 EXPRESSION TAG SEQADV 4ZKB TYR A 274 UNP Q2F862 EXPRESSION TAG SEQADV 4ZKB PHE A 275 UNP Q2F862 EXPRESSION TAG SEQADV 4ZKB GLN A 276 UNP Q2F862 EXPRESSION TAG SEQADV 4ZKB HIS B 70 UNP P10147 EXPRESSION TAG SEQADV 4ZKB HIS B 71 UNP P10147 EXPRESSION TAG SEQADV 4ZKB HIS B 72 UNP P10147 EXPRESSION TAG SEQADV 4ZKB HIS B 73 UNP P10147 EXPRESSION TAG SEQADV 4ZKB HIS B 74 UNP P10147 EXPRESSION TAG SEQADV 4ZKB HIS B 75 UNP P10147 EXPRESSION TAG SEQRES 1 A 276 ALA PRO LEU LEU GLU SER GLN ARG SER ASN SER GLU GLU SEQRES 2 A 276 LYS ALA ASN PHE CYS SER THR HIS ASN ASP GLU VAL TYR SEQRES 3 A 276 ALA ARG PHE ARG LEU GLN MET ARG VAL GLY VAL ARG HIS SEQRES 4 A 276 SER PRO LEU TYR THR PRO SER ASN MET CYS MET LEU ASP SEQRES 5 A 276 ILE GLU ASP SER VAL GLU ASP ILE GLU GLU SER THR GLU SEQRES 6 A 276 LYS GLU TYR ALA SER THR ALA THR GLY GLU ALA ALA GLY SEQRES 7 A 276 VAL ASN VAL SER VAL ALA LEU VAL GLY GLU GLY VAL SER SEQRES 8 A 276 ILE PRO PHE SER TYR ILE GLY LEU GLY PHE ASN PRO SER SEQRES 9 A 276 LEU GLU ASP SER TYR LEU TYR VAL ASN VAL SER SER ARG SEQRES 10 A 276 ALA PRO TRP VAL LYS GLN THR SER ASP LEU SER ALA ASN SEQRES 11 A 276 GLY GLY TRP GLY ILE LYS GLN VAL LEU GLU LYS GLU LEU SEQRES 12 A 276 LEU ALA ILE GLN ILE GLY CYS ASP ASN GLN LYS PHE PRO SEQRES 13 A 276 GLU GLU PRO THR THR THR PRO PRO SER PRO VAL THR THR SEQRES 14 A 276 THR LEU SER SER THR THR PRO ASP LEU ASN GLU GLU ASN SEQRES 15 A 276 THR GLU ASN THR PRO THR THR THR GLY ALA SER VAL ASP SEQRES 16 A 276 ARG LYS ARG ASN PRO ALA ASP ILE ASP PHE SER LEU LEU SEQRES 17 A 276 VAL ASP PRO ARG CYS VAL THR SER VAL ASP LEU HIS VAL SEQRES 18 A 276 GLU LEU ARG ASP ALA CYS ILE ASP TYR LYS GLN GLU SER SEQRES 19 A 276 PRO LEU SER LEU LYS GLY LYS TYR GLY ASP GLY GLU LEU SEQRES 20 A 276 VAL LYS LYS GLU ILE LYS ASP VAL GLY LYS ASN HIS ASN SEQRES 21 A 276 MET CYS SER LEU ASN LEU ASN PRO GLY ASN GLU ASN LEU SEQRES 22 A 276 TYR PHE GLN SEQRES 1 B 75 SER LEU ALA ALA ASP THR PRO THR ALA CYS CYS PHE SER SEQRES 2 B 75 TYR THR SER ARG GLN ILE PRO GLN ASN PHE ILE ALA ASP SEQRES 3 B 75 TYR PHE GLU THR SER SER GLN CYS SER LYS PRO GLY VAL SEQRES 4 B 75 ILE PHE LEU THR LYS ARG SER ARG GLN VAL CYS ALA ASP SEQRES 5 B 75 PRO SER GLU GLU TRP VAL GLN LYS TYR VAL SER ASP LEU SEQRES 6 B 75 GLU LEU SER ALA HIS HIS HIS HIS HIS HIS MODRES 4ZKB NAG C 1 NAG -D MODRES 4ZKB NAG C 2 NAG -D MODRES 4ZKB NAG D 1 NAG -D MODRES 4ZKB NAG D 2 NAG -D HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 4 BMA C6 H12 O6 HELIX 1 AA1 SER A 11 HIS A 21 1 11 HELIX 2 AA2 SER A 128 GLU A 142 1 15 HELIX 3 AA3 CYS A 227 LYS A 231 5 5 HELIX 4 AA4 ASP A 244 ILE A 252 1 9 HELIX 5 AA5 LYS A 253 VAL A 255 5 3 HELIX 6 AA6 GLU B 56 VAL B 62 1 7 SHEET 1 AA1 6 SER A 237 TYR A 242 0 SHEET 2 AA1 6 VAL A 214 ASP A 225 -1 N VAL A 221 O GLY A 240 SHEET 3 AA1 6 ALA A 27 VAL A 37 -1 N ARG A 34 O ASP A 218 SHEET 4 AA1 6 SER A 108 SER A 116 -1 O SER A 108 N VAL A 37 SHEET 5 AA1 6 PHE A 94 PHE A 101 -1 N SER A 95 O SER A 115 SHEET 6 AA1 6 ASN A 260 ASN A 265 -1 O CYS A 262 N LEU A 99 SHEET 1 AA2 6 CYS A 49 ASP A 59 0 SHEET 2 AA2 6 LYS A 66 ALA A 76 -1 O GLU A 67 N GLU A 58 SHEET 3 AA2 6 VAL A 79 GLU A 88 -1 O VAL A 81 N GLY A 74 SHEET 4 AA2 6 LEU A 143 GLY A 149 -1 O ALA A 145 N ALA A 84 SHEET 5 AA2 6 PHE A 205 VAL A 209 1 O SER A 206 N ILE A 146 SHEET 6 AA2 6 CYS B 10 SER B 13 -1 O PHE B 12 N LEU A 207 SHEET 1 AA3 2 ILE B 40 PHE B 41 0 SHEET 2 AA3 2 VAL B 49 CYS B 50 -1 O VAL B 49 N PHE B 41 SSBOND 1 CYS A 18 CYS A 227 1555 1555 2.04 SSBOND 2 CYS A 49 CYS A 262 1555 1555 2.04 SSBOND 3 CYS A 150 CYS A 213 1555 1555 2.02 SSBOND 4 CYS B 10 CYS B 34 1555 1555 2.03 SSBOND 5 CYS B 11 CYS B 50 1555 1555 2.01 LINK ND2 ASN A 80 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN A 113 C1 NAG D 1 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.43 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.45 CISPEP 1 ILE B 19 PRO B 20 0 7.77 CRYST1 78.000 78.000 186.020 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012821 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012821 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005376 0.00000