HEADER TRANSFERASE 30-APR-15 4ZKI TITLE THE CRYSTAL STRUCTURE OF HISTIDINE KINASE YYCG WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTIDINE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 370-624; COMPND 5 SYNONYM: YYCG; COMPND 6 EC: 2.7.13.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS PLANTARUM JDM1; SOURCE 3 ORGANISM_TAXID: 644042; SOURCE 4 STRAIN: JDM1; SOURCE 5 GENE: HPK1, JDM1_0052; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HISTIDINE KINASE, ADP, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.CAI REVDAT 5 08-NOV-23 4ZKI 1 REMARK REVDAT 4 23-MAR-22 4ZKI 1 REMARK REVDAT 3 25-OCT-17 4ZKI 1 JRNL REVDAT 2 04-OCT-17 4ZKI 1 REMARK REVDAT 1 04-MAY-16 4ZKI 0 JRNL AUTH Y.CAI,M.SU,A.AHMAD,X.HU,J.SANG,L.KONG,X.CHEN,C.WANG,J.SHUAI, JRNL AUTH 2 A.HAN JRNL TITL CONFORMATIONAL DYNAMICS OF THE ESSENTIAL SENSOR HISTIDINE JRNL TITL 2 KINASE WALK JRNL REF ACTA CRYSTALLOGR D STRUCT V. 73 793 2017 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 28994408 JRNL DOI 10.1107/S2059798317013043 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 8881 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 449 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.8238 - 4.9040 1.00 2922 150 0.1998 0.2074 REMARK 3 2 4.9040 - 3.8929 1.00 2777 149 0.1871 0.2129 REMARK 3 3 3.8929 - 3.4010 0.99 2733 150 0.2278 0.2707 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3642 REMARK 3 ANGLE : 1.437 4915 REMARK 3 CHIRALITY : 0.053 553 REMARK 3 PLANARITY : 0.007 625 REMARK 3 DIHEDRAL : 16.241 1362 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 372 THROUGH 447 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1961 -5.0018 -21.0471 REMARK 3 T TENSOR REMARK 3 T11: 0.4760 T22: 0.5624 REMARK 3 T33: 0.5891 T12: 0.0495 REMARK 3 T13: -0.0028 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 0.2704 L22: 0.6952 REMARK 3 L33: 0.3237 L12: 0.3019 REMARK 3 L13: -0.2335 L23: -0.5264 REMARK 3 S TENSOR REMARK 3 S11: 0.0958 S12: 0.0323 S13: -0.0495 REMARK 3 S21: -0.2565 S22: 0.1239 S23: -0.0572 REMARK 3 S31: -0.0396 S32: 0.0786 S33: 0.0098 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 448 THROUGH 610 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1681 -27.4879 -28.8591 REMARK 3 T TENSOR REMARK 3 T11: 0.3467 T22: 0.3939 REMARK 3 T33: 0.4143 T12: 0.0378 REMARK 3 T13: 0.0451 T23: 0.0443 REMARK 3 L TENSOR REMARK 3 L11: 0.7357 L22: 0.5140 REMARK 3 L33: 0.3143 L12: 0.2579 REMARK 3 L13: 0.0741 L23: 0.4065 REMARK 3 S TENSOR REMARK 3 S11: -0.1207 S12: -0.0991 S13: -0.0330 REMARK 3 S21: 0.1813 S22: 0.1064 S23: 0.0365 REMARK 3 S31: -0.0579 S32: -0.0398 S33: -0.0148 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 384 THROUGH 440 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2558 0.3432 -10.2924 REMARK 3 T TENSOR REMARK 3 T11: 0.5222 T22: 0.4401 REMARK 3 T33: 0.4693 T12: 0.0980 REMARK 3 T13: -0.0148 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 0.1769 L22: 0.3026 REMARK 3 L33: 0.1208 L12: 0.0699 REMARK 3 L13: 0.1059 L23: -0.1605 REMARK 3 S TENSOR REMARK 3 S11: -0.3244 S12: -0.4917 S13: 0.2531 REMARK 3 S21: 0.3778 S22: 0.4611 S23: -0.4029 REMARK 3 S31: -0.0218 S32: -0.1709 S33: 0.0003 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 441 THROUGH 517 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5637 0.4939 2.4149 REMARK 3 T TENSOR REMARK 3 T11: 0.7263 T22: 0.4969 REMARK 3 T33: 0.5345 T12: -0.0435 REMARK 3 T13: -0.0767 T23: 0.0670 REMARK 3 L TENSOR REMARK 3 L11: 0.7593 L22: 0.1243 REMARK 3 L33: 0.7638 L12: -0.0582 REMARK 3 L13: -0.2133 L23: -0.0217 REMARK 3 S TENSOR REMARK 3 S11: -0.4881 S12: 0.3978 S13: 0.1832 REMARK 3 S21: 0.0671 S22: 0.2615 S23: -0.0381 REMARK 3 S31: -0.6690 S32: 0.0333 S33: -0.2153 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 518 THROUGH 542 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9701 -5.2081 11.4295 REMARK 3 T TENSOR REMARK 3 T11: 0.4025 T22: 0.3960 REMARK 3 T33: 0.3019 T12: -0.1024 REMARK 3 T13: -0.1007 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 0.5990 L22: 2.7260 REMARK 3 L33: 1.4511 L12: -0.6508 REMARK 3 L13: -0.8604 L23: 0.3652 REMARK 3 S TENSOR REMARK 3 S11: 0.1308 S12: -0.0189 S13: -0.0151 REMARK 3 S21: 0.0713 S22: 0.1732 S23: -0.8228 REMARK 3 S31: 0.1616 S32: 0.1484 S33: 0.1355 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 543 THROUGH 610 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0733 -13.6757 4.5947 REMARK 3 T TENSOR REMARK 3 T11: 0.8675 T22: 0.4679 REMARK 3 T33: 0.5908 T12: -0.0763 REMARK 3 T13: -0.0829 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 0.3161 L22: 0.4538 REMARK 3 L33: 0.2991 L12: -0.2517 REMARK 3 L13: 0.1588 L23: 0.2081 REMARK 3 S TENSOR REMARK 3 S11: 0.2408 S12: 0.1025 S13: -0.2427 REMARK 3 S21: -0.2765 S22: -0.2068 S23: -0.1931 REMARK 3 S31: 0.7437 S32: 0.1795 S33: -0.0271 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZKI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000209456. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : OTHER REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8921 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4U7O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M AMMONIUM SULFATE, 1% PEG 3350, REMARK 280 PH 5.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.74950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.67550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.01700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.67550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.74950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.01700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 348 REMARK 465 GLY A 349 REMARK 465 SER A 350 REMARK 465 SER A 351 REMARK 465 HIS A 352 REMARK 465 HIS A 353 REMARK 465 HIS A 354 REMARK 465 HIS A 355 REMARK 465 HIS A 356 REMARK 465 HIS A 357 REMARK 465 SER A 358 REMARK 465 SER A 359 REMARK 465 GLY A 360 REMARK 465 LEU A 361 REMARK 465 VAL A 362 REMARK 465 PRO A 363 REMARK 465 ARG A 364 REMARK 465 GLY A 365 REMARK 465 SER A 366 REMARK 465 ALA A 367 REMARK 465 GLU A 368 REMARK 465 PHE A 369 REMARK 465 HIS A 370 REMARK 465 ASP A 371 REMARK 465 ASP A 478 REMARK 465 ALA A 565 REMARK 465 ARG A 566 REMARK 465 SER A 567 REMARK 465 ARG A 568 REMARK 465 ALA A 569 REMARK 465 PRO A 611 REMARK 465 TYR A 612 REMARK 465 GLU A 613 REMARK 465 GLU A 614 REMARK 465 GLU A 615 REMARK 465 ASP A 616 REMARK 465 LEU A 617 REMARK 465 TRP A 618 REMARK 465 ASP A 619 REMARK 465 ASP A 620 REMARK 465 ASP A 621 REMARK 465 SER A 622 REMARK 465 GLN A 623 REMARK 465 ALA A 624 REMARK 465 MET B 348 REMARK 465 GLY B 349 REMARK 465 SER B 350 REMARK 465 SER B 351 REMARK 465 HIS B 352 REMARK 465 HIS B 353 REMARK 465 HIS B 354 REMARK 465 HIS B 355 REMARK 465 HIS B 356 REMARK 465 HIS B 357 REMARK 465 SER B 358 REMARK 465 SER B 359 REMARK 465 GLY B 360 REMARK 465 LEU B 361 REMARK 465 VAL B 362 REMARK 465 PRO B 363 REMARK 465 ARG B 364 REMARK 465 GLY B 365 REMARK 465 SER B 366 REMARK 465 ALA B 367 REMARK 465 GLU B 368 REMARK 465 PHE B 369 REMARK 465 HIS B 370 REMARK 465 ASP B 371 REMARK 465 VAL B 372 REMARK 465 THR B 373 REMARK 465 GLU B 374 REMARK 465 GLN B 375 REMARK 465 GLN B 376 REMARK 465 LYS B 377 REMARK 465 ILE B 378 REMARK 465 ASP B 379 REMARK 465 ASN B 380 REMARK 465 ASP B 381 REMARK 465 ARG B 382 REMARK 465 LYS B 383 REMARK 465 LEU B 442 REMARK 465 SER B 443 REMARK 465 ARG B 444 REMARK 465 MET B 445 REMARK 465 ASP B 446 REMARK 465 SER B 447 REMARK 465 GLY B 448 REMARK 465 THR B 449 REMARK 465 THR B 450 REMARK 465 ASP B 478 REMARK 465 ASN B 479 REMARK 465 PRO B 480 REMARK 465 ALA B 481 REMARK 465 ALA B 565 REMARK 465 ARG B 566 REMARK 465 SER B 567 REMARK 465 ARG B 568 REMARK 465 ALA B 569 REMARK 465 PRO B 611 REMARK 465 TYR B 612 REMARK 465 GLU B 613 REMARK 465 GLU B 614 REMARK 465 GLU B 615 REMARK 465 ASP B 616 REMARK 465 LEU B 617 REMARK 465 TRP B 618 REMARK 465 ASP B 619 REMARK 465 ASP B 620 REMARK 465 ASP B 621 REMARK 465 SER B 622 REMARK 465 GLN B 623 REMARK 465 ALA B 624 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 451 NZ LYS A 503 2.09 REMARK 500 NH2 ARG A 561 O GLY A 572 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 374 -73.49 -60.25 REMARK 500 PHE A 559 -0.30 64.32 REMARK 500 ASP A 563 -61.51 -153.36 REMARK 500 LYS A 599 -65.40 -90.98 REMARK 500 SER B 519 68.44 -114.99 REMARK 500 GLN B 543 45.40 -103.84 REMARK 500 PHE B 559 -5.08 65.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP B 701 DBREF 4ZKI A 370 624 UNP C6VIM1 C6VIM1_LACPJ 370 624 DBREF 4ZKI B 370 624 UNP C6VIM1 C6VIM1_LACPJ 370 624 SEQADV 4ZKI MET A 348 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI GLY A 349 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI SER A 350 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI SER A 351 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI HIS A 352 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI HIS A 353 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI HIS A 354 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI HIS A 355 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI HIS A 356 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI HIS A 357 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI SER A 358 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI SER A 359 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI GLY A 360 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI LEU A 361 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI VAL A 362 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI PRO A 363 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI ARG A 364 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI GLY A 365 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI SER A 366 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI ALA A 367 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI GLU A 368 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI PHE A 369 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI MET B 348 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI GLY B 349 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI SER B 350 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI SER B 351 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI HIS B 352 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI HIS B 353 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI HIS B 354 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI HIS B 355 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI HIS B 356 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI HIS B 357 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI SER B 358 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI SER B 359 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI GLY B 360 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI LEU B 361 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI VAL B 362 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI PRO B 363 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI ARG B 364 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI GLY B 365 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI SER B 366 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI ALA B 367 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI GLU B 368 UNP C6VIM1 EXPRESSION TAG SEQADV 4ZKI PHE B 369 UNP C6VIM1 EXPRESSION TAG SEQRES 1 A 277 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 277 LEU VAL PRO ARG GLY SER ALA GLU PHE HIS ASP VAL THR SEQRES 3 A 277 GLU GLN GLN LYS ILE ASP ASN ASP ARG LYS GLN PHE VAL SEQRES 4 A 277 SER ASN VAL SER HIS GLU LEU ARG THR PRO LEU THR SER SEQRES 5 A 277 LEU ARG SER TYR ILE GLU ALA LEU SER ASP GLY ALA TRP SEQRES 6 A 277 LYS ASP PRO GLU VAL ALA PRO GLY PHE LEU LYS VAL THR SEQRES 7 A 277 GLN GLU GLU THR ASP ARG MET ILE ARG MET ILE ASN GLU SEQRES 8 A 277 LEU LEU SER LEU SER ARG MET ASP SER GLY THR THR ARG SEQRES 9 A 277 VAL ASP MET GLU LEU VAL ASN ILE ASN GLU MET PHE ASN SEQRES 10 A 277 TYR VAL LEU ASP ARG PHE ASP MET ILE LEU LYS LYS ASP SEQRES 11 A 277 ASP ASN PRO ALA LYS TYR TYR THR ILE LYS ARG GLU PHE SEQRES 12 A 277 THR LYS ARG ASP LEU TRP VAL GLU ILE ASP THR ASP LYS SEQRES 13 A 277 PHE THR GLN VAL LEU ASP ASN ILE MET ASN ASN ALA ILE SEQRES 14 A 277 LYS TYR SER PRO ASP GLY GLY VAL VAL THR CYS ARG LEU SEQRES 15 A 277 LEU GLU THR HIS ASN GLN VAL ILE ILE SER ILE SER ASP SEQRES 16 A 277 GLN GLY LEU GLY ILE PRO ARG ALA ASP LEU GLY HIS VAL SEQRES 17 A 277 PHE ASP ARG PHE PHE ARG VAL ASP LYS ALA ARG SER ARG SEQRES 18 A 277 ALA GLN GLY GLY THR GLY LEU GLY LEU ALA ILE SER LYS SEQRES 19 A 277 GLU VAL VAL GLN MET LEU GLY GLY ARG ILE TRP VAL ASP SEQRES 20 A 277 SER VAL GLU GLY LYS GLY SER THR PHE TYR ILE SER LEU SEQRES 21 A 277 PRO TYR GLU PRO TYR GLU GLU GLU ASP LEU TRP ASP ASP SEQRES 22 A 277 ASP SER GLN ALA SEQRES 1 B 277 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 277 LEU VAL PRO ARG GLY SER ALA GLU PHE HIS ASP VAL THR SEQRES 3 B 277 GLU GLN GLN LYS ILE ASP ASN ASP ARG LYS GLN PHE VAL SEQRES 4 B 277 SER ASN VAL SER HIS GLU LEU ARG THR PRO LEU THR SER SEQRES 5 B 277 LEU ARG SER TYR ILE GLU ALA LEU SER ASP GLY ALA TRP SEQRES 6 B 277 LYS ASP PRO GLU VAL ALA PRO GLY PHE LEU LYS VAL THR SEQRES 7 B 277 GLN GLU GLU THR ASP ARG MET ILE ARG MET ILE ASN GLU SEQRES 8 B 277 LEU LEU SER LEU SER ARG MET ASP SER GLY THR THR ARG SEQRES 9 B 277 VAL ASP MET GLU LEU VAL ASN ILE ASN GLU MET PHE ASN SEQRES 10 B 277 TYR VAL LEU ASP ARG PHE ASP MET ILE LEU LYS LYS ASP SEQRES 11 B 277 ASP ASN PRO ALA LYS TYR TYR THR ILE LYS ARG GLU PHE SEQRES 12 B 277 THR LYS ARG ASP LEU TRP VAL GLU ILE ASP THR ASP LYS SEQRES 13 B 277 PHE THR GLN VAL LEU ASP ASN ILE MET ASN ASN ALA ILE SEQRES 14 B 277 LYS TYR SER PRO ASP GLY GLY VAL VAL THR CYS ARG LEU SEQRES 15 B 277 LEU GLU THR HIS ASN GLN VAL ILE ILE SER ILE SER ASP SEQRES 16 B 277 GLN GLY LEU GLY ILE PRO ARG ALA ASP LEU GLY HIS VAL SEQRES 17 B 277 PHE ASP ARG PHE PHE ARG VAL ASP LYS ALA ARG SER ARG SEQRES 18 B 277 ALA GLN GLY GLY THR GLY LEU GLY LEU ALA ILE SER LYS SEQRES 19 B 277 GLU VAL VAL GLN MET LEU GLY GLY ARG ILE TRP VAL ASP SEQRES 20 B 277 SER VAL GLU GLY LYS GLY SER THR PHE TYR ILE SER LEU SEQRES 21 B 277 PRO TYR GLU PRO TYR GLU GLU GLU ASP LEU TRP ASP ASP SEQRES 22 B 277 ASP SER GLN ALA HET ADP B 701 27 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 3 ADP C10 H15 N5 O10 P2 HELIX 1 AA1 THR A 373 ASP A 409 1 37 HELIX 2 AA2 GLY A 410 ASP A 414 5 5 HELIX 3 AA3 VAL A 417 GLY A 448 1 32 HELIX 4 AA4 ILE A 459 LYS A 476 1 18 HELIX 5 AA5 ASP A 500 TYR A 518 1 19 HELIX 6 AA6 GLY A 553 ASP A 557 5 5 HELIX 7 AA7 LEU A 575 LEU A 587 1 13 HELIX 8 AA8 PHE B 385 LEU B 393 1 9 HELIX 9 AA9 LEU B 393 ASP B 409 1 17 HELIX 10 AB1 GLY B 410 ASP B 414 5 5 HELIX 11 AB2 VAL B 417 SER B 441 1 25 HELIX 12 AB3 ILE B 459 LYS B 475 1 17 HELIX 13 AB4 ASP B 500 TYR B 518 1 19 HELIX 14 AB5 GLY B 553 ASP B 557 5 5 HELIX 15 AB6 LEU B 575 LEU B 587 1 13 SHEET 1 AA1 2 GLU A 455 ASN A 458 0 SHEET 2 AA1 2 TRP A 496 ILE A 499 -1 O ILE A 499 N GLU A 455 SHEET 1 AA2 5 TYR A 484 PHE A 490 0 SHEET 2 AA2 5 GLY A 523 GLU A 531 1 O CYS A 527 N GLU A 489 SHEET 3 AA2 5 GLN A 535 ASP A 542 -1 O ILE A 537 N LEU A 530 SHEET 4 AA2 5 GLY A 600 PRO A 608 -1 O ILE A 605 N ILE A 538 SHEET 5 AA2 5 ARG A 590 VAL A 596 -1 N TRP A 592 O TYR A 604 SHEET 1 AA3 2 GLU B 455 ASN B 458 0 SHEET 2 AA3 2 TRP B 496 ILE B 499 -1 O VAL B 497 N VAL B 457 SHEET 1 AA4 5 TYR B 484 PHE B 490 0 SHEET 2 AA4 5 GLY B 523 THR B 532 1 O CYS B 527 N GLU B 489 SHEET 3 AA4 5 GLN B 535 ASP B 542 -1 O SER B 539 N ARG B 528 SHEET 4 AA4 5 GLY B 600 PRO B 608 -1 O LEU B 607 N VAL B 536 SHEET 5 AA4 5 ARG B 590 VAL B 596 -1 N ARG B 590 O SER B 606 CISPEP 1 LYS B 476 ASP B 477 0 -18.89 SITE 1 AC1 19 HIS B 391 ASN B 514 LYS B 517 TYR B 518 SITE 2 AC1 19 ASP B 542 GLY B 546 ILE B 547 PHE B 560 SITE 3 AC1 19 ARG B 561 VAL B 562 GLY B 571 GLY B 572 SITE 4 AC1 19 THR B 573 GLY B 574 LEU B 575 GLY B 576 SITE 5 AC1 19 LEU B 577 SER B 601 PHE B 603 CRYST1 53.499 96.034 119.351 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018692 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010413 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008379 0.00000