HEADER TRANSFERASE 01-MAY-15 4ZLE TITLE CELLOBIONIC ACID PHOSPHORYLASE - LIGAND FREE STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE B-GLYCAN PHOSPHORYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CELLOBIONIC ACID PHOSPHORYLASE; COMPND 5 EC: 2.4.1.321; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROPHAGUS DEGRADANS 2-40; SOURCE 3 ORGANISM_TAXID: 203122; SOURCE 4 STRAIN: 2-40; SOURCE 5 GENE: CEP94B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 CODONPLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS (ALPHA/ALPHA)6 BARREL, GLYCOSIDE HYDROLASE FAMILY 94, OXIDATIVE KEYWDS 2 CELLULOSE DEGRADATION SYSTEM, INTRACELLULAR ENZYME, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.W.NAM,T.ARAKAWA,S.FUSHINOBU REVDAT 5 20-MAR-24 4ZLE 1 REMARK REVDAT 4 19-FEB-20 4ZLE 1 JRNL REMARK REVDAT 3 05-AUG-15 4ZLE 1 JRNL REVDAT 2 17-JUN-15 4ZLE 1 JRNL REVDAT 1 10-JUN-15 4ZLE 0 JRNL AUTH Y.W.NAM,T.NIHIRA,T.ARAKAWA,Y.SAITO,M.KITAOKA,H.NAKAI, JRNL AUTH 2 S.FUSHINOBU JRNL TITL CRYSTAL STRUCTURE AND SUBSTRATE RECOGNITION OF CELLOBIONIC JRNL TITL 2 ACID PHOSPHORYLASE, WHICH PLAYS A KEY ROLE IN OXIDATIVE JRNL TITL 3 CELLULOSE DEGRADATION BY MICROBES. JRNL REF J.BIOL.CHEM. V. 290 18281 2015 JRNL REFN ESSN 1083-351X JRNL PMID 26041776 JRNL DOI 10.1074/JBC.M115.664664 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.NIHIRA,Y.SAITO,M.NISHIMOTO,M.KITAOKA,K.IGARASHI,K.OHTSUBO, REMARK 1 AUTH 2 H.NAKAI REMARK 1 TITL DISCOVERY OF CELLOBIONIC ACID PHOSPHORYLASE IN CELLULOLYTIC REMARK 1 TITL 2 BACTERIA AND FUNGI REMARK 1 REF FEBS LETT. V. 587 3556 2013 REMARK 1 REFN ISSN 0014-5793 REMARK 1 PMID 24055472 REMARK 1 DOI 10.1016/J.FEBSLET.2013.09.014 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 63592 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3385 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2762 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 55.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 163 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6224 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 477 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.160 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.157 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.147 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6428 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5903 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8724 ; 1.917 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13576 ; 1.068 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 783 ; 6.963 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 320 ;36.604 ;24.594 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1030 ;14.286 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;16.745 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 916 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7395 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1554 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3135 ; 2.496 ; 2.849 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3134 ; 2.490 ; 2.848 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3917 ; 3.385 ; 4.260 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3918 ; 3.384 ; 4.261 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3292 ; 3.468 ; 3.145 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3292 ; 3.467 ; 3.145 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4807 ; 5.154 ; 4.592 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7727 ; 6.487 ;23.423 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7728 ; 6.487 ;23.424 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4ZLE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000209494. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6-6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9988 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72225 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11200 REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.73000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: HEXAGONAL BYPYRAMID REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, LI2SO4, 0.6 M REMARK 280 (NH3)2SO4, GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.78167 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 123.56333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 123.56333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 61.78167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 CYCLIC POINT SYMMETRY (SCHOENFLIES SYMBOL = C2). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 51350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -160.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 -160.40100 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 92.60756 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1275 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ALA A 786 REMARK 465 THR A 787 REMARK 465 HIS A 788 REMARK 465 LEU A 789 REMARK 465 GLU A 790 REMARK 465 HIS A 791 REMARK 465 HIS A 792 REMARK 465 HIS A 793 REMARK 465 HIS A 794 REMARK 465 HIS A 795 REMARK 465 HIS A 796 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 307 CB SER A 307 OG 0.085 REMARK 500 TRP A 564 CB TRP A 564 CG 0.119 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 65 CG - SD - CE ANGL. DEV. = 10.3 DEGREES REMARK 500 ASP A 113 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 134 CB - CG - OD2 ANGL. DEV. = -7.9 DEGREES REMARK 500 ASP A 338 CB - CG - OD1 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG A 367 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 457 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 457 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 735 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 47 33.47 -149.16 REMARK 500 PHE A 64 -79.48 -84.74 REMARK 500 TYR A 95 -60.38 -172.54 REMARK 500 VAL A 137 139.15 -170.67 REMARK 500 SER A 166 142.26 -178.55 REMARK 500 GLN A 190 -30.27 -136.57 REMARK 500 ASN A 231 69.52 -161.03 REMARK 500 GLN A 263 -1.33 64.15 REMARK 500 ILE A 361 -65.06 -133.97 REMARK 500 TYR A 397 -125.38 50.33 REMARK 500 ALA A 466 -126.39 43.98 REMARK 500 ASP A 469 -137.58 -121.45 REMARK 500 GLN A 508 79.65 -103.40 REMARK 500 ALA A 618 -135.46 55.25 REMARK 500 VAL A 623 83.57 -69.94 REMARK 500 GLN A 721 52.57 -150.00 REMARK 500 GLN A 723 59.64 -143.54 REMARK 500 GLU A 761 -27.04 75.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1377 DISTANCE = 5.89 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 807 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 808 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 809 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 810 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ZLF RELATED DB: PDB REMARK 900 RELATED ID: 4ZLG RELATED DB: PDB REMARK 900 RELATED ID: 4ZLI RELATED DB: PDB DBREF 4ZLE A 1 788 UNP Q21MB1 Q21MB1_SACD2 1 788 SEQADV 4ZLE GLY A 1 UNP Q21MB1 MET 1 ENGINEERED MUTATION SEQADV 4ZLE LEU A 789 UNP Q21MB1 EXPRESSION TAG SEQADV 4ZLE GLU A 790 UNP Q21MB1 EXPRESSION TAG SEQADV 4ZLE HIS A 791 UNP Q21MB1 EXPRESSION TAG SEQADV 4ZLE HIS A 792 UNP Q21MB1 EXPRESSION TAG SEQADV 4ZLE HIS A 793 UNP Q21MB1 EXPRESSION TAG SEQADV 4ZLE HIS A 794 UNP Q21MB1 EXPRESSION TAG SEQADV 4ZLE HIS A 795 UNP Q21MB1 EXPRESSION TAG SEQADV 4ZLE HIS A 796 UNP Q21MB1 EXPRESSION TAG SEQRES 1 A 796 GLY LEU LYS ALA ILE ASN ASN GLY GLU ARG TYR GLN LEU SEQRES 2 A 796 THR SER PRO THR ALA MET PRO GLN SER ALA SER PHE LEU SEQRES 3 A 796 TRP ASN LYS LYS MET MET ILE GLN VAL ASN CYS ARG GLY SEQRES 4 A 796 TYR ALA VAL ALA GLN PHE MET GLN PRO GLU PRO ALA LYS SEQRES 5 A 796 TYR ALA TYR ALA PRO ASN LEU GLU ALA LYS THR PHE MET SEQRES 6 A 796 GLN PRO GLU GLN PRO TYR TYR ALA HIS HIS PRO GLY ARG SEQRES 7 A 796 PHE PHE TYR ILE LYS ASP GLU GLU THR GLY GLU ILE PHE SEQRES 8 A 796 SER ALA PRO TYR GLU PRO VAL ARG SER GLN LEU ASN ASN SEQRES 9 A 796 PHE SER PHE ASN ALA GLY LYS SER ASP ILE SER TRP HIS SEQRES 10 A 796 ILE ALA ALA LEU GLY ILE GLU VAL GLU LEU CYS LEU SER SEQRES 11 A 796 LEU PRO VAL ASP ASP VAL VAL GLU LEU TRP GLU LEU LYS SEQRES 12 A 796 ILE LYS ASN GLY GLY ALA GLN PRO ARG LYS LEU SER ILE SEQRES 13 A 796 TYR PRO TYR PHE PRO VAL GLY TYR MET SER TRP MET ASN SEQRES 14 A 796 GLN SER GLY ASP TYR SER GLN THR ALA GLY GLY ILE ILE SEQRES 15 A 796 ALA SER CYS VAL THR PRO TYR GLN LYS VAL ALA ASP TYR SEQRES 16 A 796 PHE LYS ASN LYS ASP PHE LYS ASP LYS THR PHE PHE LEU SEQRES 17 A 796 HIS GLU THR ALA PRO ALA ALA TRP GLU VAL ASN GLN LYS SEQRES 18 A 796 ASN PHE GLU GLY GLU GLY GLY LEU HIS ASN PRO ASN ALA SEQRES 19 A 796 ILE GLN GLN GLU THR LEU GLY CYS GLY ASN ALA LEU TYR SEQRES 20 A 796 GLU THR PRO THR ALA VAL LEU GLN TYR ARG ARG GLU LEU SEQRES 21 A 796 ALA ALA GLN GLU GLN GLN THR PHE ARG PHE ILE PHE GLY SEQRES 22 A 796 PRO ALA PHE ASP GLU SER GLU ALA ILE ALA LEU ARG ASN SEQRES 23 A 796 LYS TYR LEU SER ALA GLU GLY PHE ALA LYS ALA LYS SER SEQRES 24 A 796 GLU TYR GLN THR TYR ILE THR SER GLY LYS GLY CYS LEU SEQRES 25 A 796 GLN ILE ASN THR PRO ASP PRO GLU LEU ASN ASN PHE VAL SEQRES 26 A 796 ASN HIS TRP LEU PRO ARG GLN VAL PHE TYR HIS GLY ASP SEQRES 27 A 796 VAL ASN ARG LEU THR THR ASP PRO GLN THR ARG ASN TYR SEQRES 28 A 796 ILE GLN ASP ASN MET GLY MET SER TYR ILE LYS PRO ASN SEQRES 29 A 796 ILE THR ARG GLN ALA PHE LEU HIS ALA LEU SER GLN GLN SEQRES 30 A 796 GLU GLU SER GLY ALA MET PRO ASP GLY ILE LEU LEU LEU SEQRES 31 A 796 GLU GLY ALA GLU LEU LYS TYR ILE ASN GLN ILE PRO HIS SEQRES 32 A 796 THR ASP HIS CYS VAL TRP LEU PRO VAL CYS MET GLN ALA SEQRES 33 A 796 TYR LEU ASP GLU THR ASN ASP TYR ALA LEU LEU ASP GLU SEQRES 34 A 796 ILE VAL PRO TYR ALA SER GLY GLU LYS ARG GLU THR VAL SEQRES 35 A 796 GLU GLN HIS MET HIS HIS ALA MET ARG TRP LEU LEU GLN SEQRES 36 A 796 ALA ARG ASP GLU ARG GLY LEU SER PHE ILE ALA GLN GLY SEQRES 37 A 796 ASP TRP CYS ASP PRO MET ASN MET VAL GLY TYR LYS GLY SEQRES 38 A 796 LYS GLY VAL SER GLY TRP LEU SER VAL ALA THR ALA TYR SEQRES 39 A 796 ALA LEU ASN LEU TRP ALA ASP VAL CYS GLU GLN ARG GLN SEQRES 40 A 796 GLN ASN SER CYS ALA ASN GLU PHE ARG GLN GLY ALA LYS SEQRES 41 A 796 ASP ILE ASN ALA ALA VAL ASN LYS HIS ILE TRP ASP GLY SEQRES 42 A 796 GLU TRP PHE GLY ARG GLY ILE THR ASP ASP GLY VAL LEU SEQRES 43 A 796 PHE GLY THR SER LYS ASP LYS GLU GLY ARG ILE PHE LEU SEQRES 44 A 796 ASN PRO GLN SER TRP ALA ILE LEU GLY GLY ALA ALA ASP SEQRES 45 A 796 GLU GLN LYS ILE PRO CYS LEU LEU ASP ALA VAL GLU GLN SEQRES 46 A 796 GLN LEU GLU THR PRO TYR GLY VAL MET MET LEU ALA PRO SEQRES 47 A 796 ALA PHE THR ALA MET ARG ASP ASP VAL GLY ARG VAL THR SEQRES 48 A 796 GLN LYS PHE PRO GLY SER ALA GLU ASN GLY SER VAL TYR SEQRES 49 A 796 ASN HIS ALA ALA VAL PHE TYR ILE PHE SER LEU LEU SER SEQRES 50 A 796 ILE GLY GLU SER GLU ARG ALA TYR LYS LEU LEU ARG GLN SEQRES 51 A 796 MET LEU PRO GLY PRO ASP GLU ALA ASP LEU LEU GLN ARG SEQRES 52 A 796 GLY GLN LEU PRO VAL PHE ILE PRO ASN TYR TYR ARG GLY SEQRES 53 A 796 ALA TYR TYR GLN HIS PRO ARG THR ALA GLY ARG SER SER SEQRES 54 A 796 GLN LEU PHE ASN THR GLY THR VAL SER TRP VAL TYR ARG SEQRES 55 A 796 CYS LEU ILE GLU GLY VAL PHE GLY LEU LYS GLY SER PRO SEQRES 56 A 796 GLN GLY LEU VAL VAL GLN PRO GLN LEU PRO VAL ALA TRP SEQRES 57 A 796 GLN THR ALA GLU ALA VAL ARG GLU PHE ARG GLY ALA THR SEQRES 58 A 796 PHE ASN VAL SER TYR ARG LYS SER SER ASP ILE LYS GLU SEQRES 59 A 796 MET GLU ILE GLN LEU ASN GLU SER VAL ILE SER GLY ASN SEQRES 60 A 796 THR ILE SER ASP ILE THR ALA GLY ALA THR TYR GLN LEU SEQRES 61 A 796 THR VAL LEU LEU PRO ALA THR HIS LEU GLU HIS HIS HIS SEQRES 62 A 796 HIS HIS HIS HET SO4 A 801 5 HET SO4 A 802 5 HET SO4 A 803 5 HET SO4 A 804 5 HET SO4 A 805 5 HET SO4 A 806 5 HET GOL A 807 6 HET GOL A 808 6 HET GOL A 809 6 HET CL A 810 1 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SO4 6(O4 S 2-) FORMUL 8 GOL 3(C3 H8 O3) FORMUL 11 CL CL 1- FORMUL 12 HOH *477(H2 O) HELIX 1 AA1 ASN A 6 GLY A 8 5 3 HELIX 2 AA2 LYS A 191 LYS A 199 1 9 HELIX 3 AA3 GLN A 220 GLY A 225 1 6 HELIX 4 AA4 PRO A 232 GLN A 237 1 6 HELIX 5 AA5 ASP A 277 LEU A 289 1 13 HELIX 6 AA6 SER A 290 GLY A 308 1 19 HELIX 7 AA7 ASP A 318 TRP A 328 1 11 HELIX 8 AA8 TRP A 328 ASN A 340 1 13 HELIX 9 AA9 ARG A 341 THR A 343 5 3 HELIX 10 AB1 GLN A 347 SER A 359 1 13 HELIX 11 AB2 LYS A 362 SER A 375 1 14 HELIX 12 AB3 LYS A 396 ILE A 401 5 6 HELIX 13 AB4 ASP A 405 CYS A 407 5 3 HELIX 14 AB5 VAL A 408 ASN A 422 1 15 HELIX 15 AB6 ASP A 423 ASP A 428 5 6 HELIX 16 AB7 VAL A 442 ALA A 456 1 15 HELIX 17 AB8 GLY A 486 ARG A 506 1 21 HELIX 18 AB9 GLN A 508 ILE A 530 1 23 HELIX 19 AC1 LEU A 559 GLY A 569 1 11 HELIX 20 AC2 LYS A 575 LEU A 587 1 13 HELIX 21 AC3 GLY A 608 LYS A 613 5 6 HELIX 22 AC4 ASN A 625 ILE A 638 1 14 HELIX 23 AC5 GLU A 640 GLN A 650 1 11 HELIX 24 AC6 ASP A 656 GLY A 664 1 9 HELIX 25 AC7 HIS A 681 ALA A 685 5 5 HELIX 26 AC8 GLY A 695 GLY A 707 1 13 SHEET 1 AA111 LYS A 3 ILE A 5 0 SHEET 2 AA111 ARG A 10 LEU A 13 -1 O GLN A 12 N LYS A 3 SHEET 3 AA111 ASN A 104 GLY A 110 -1 O PHE A 107 N LEU A 13 SHEET 4 AA111 ILE A 114 ALA A 120 -1 O SER A 115 N ASN A 108 SHEET 5 AA111 ILE A 123 SER A 130 -1 O LEU A 129 N ILE A 114 SHEET 6 AA111 GLU A 138 ASN A 146 -1 O LYS A 145 N GLU A 124 SHEET 7 AA111 GLN A 265 ALA A 275 -1 O PHE A 268 N LEU A 142 SHEET 8 AA111 LYS A 204 HIS A 209 -1 N LEU A 208 O ILE A 271 SHEET 9 AA111 GLY A 180 CYS A 185 -1 N ALA A 183 O THR A 205 SHEET 10 AA111 GLN A 170 SER A 175 -1 N SER A 175 O GLY A 180 SHEET 11 AA111 ALA A 245 LEU A 246 -1 O ALA A 245 N GLY A 172 SHEET 1 AA2 4 ALA A 23 TRP A 27 0 SHEET 2 AA2 4 MET A 31 ASN A 36 -1 O ILE A 33 N LEU A 26 SHEET 3 AA2 4 ALA A 41 MET A 46 -1 O VAL A 42 N GLN A 34 SHEET 4 AA2 4 PRO A 50 ALA A 51 -1 O ALA A 51 N PHE A 45 SHEET 1 AA3 5 ILE A 90 ALA A 93 0 SHEET 2 AA3 5 PHE A 79 ASP A 84 -1 N ILE A 82 O PHE A 91 SHEET 3 AA3 5 ARG A 152 PRO A 161 -1 O SER A 155 N LYS A 83 SHEET 4 AA3 5 PRO A 250 LEU A 260 -1 O ARG A 258 N LEU A 154 SHEET 5 AA3 5 ALA A 215 ASN A 219 -1 N ALA A 215 O GLN A 255 SHEET 1 AA4 6 LEU A 312 ASN A 315 0 SHEET 2 AA4 6 THR A 730 PHE A 737 -1 O GLU A 732 N ASN A 315 SHEET 3 AA4 6 ALA A 740 LYS A 748 -1 O VAL A 744 N ALA A 733 SHEET 4 AA4 6 THR A 777 LEU A 784 1 O VAL A 782 N SER A 745 SHEET 5 AA4 6 GLU A 756 LEU A 759 -1 N GLU A 756 O LEU A 783 SHEET 6 AA4 6 SER A 762 VAL A 763 -1 O SER A 762 N LEU A 759 SHEET 1 AA5 2 ILE A 430 PRO A 432 0 SHEET 2 AA5 2 ARG A 439 THR A 441 -1 O GLU A 440 N VAL A 431 SHEET 1 AA6 4 SER A 463 PHE A 464 0 SHEET 2 AA6 4 VAL A 484 SER A 485 -1 O SER A 485 N SER A 463 SHEET 3 AA6 4 GLY A 539 ILE A 540 -1 O ILE A 540 N VAL A 484 SHEET 4 AA6 4 LEU A 546 PHE A 547 -1 O PHE A 547 N GLY A 539 SHEET 1 AA7 2 ILE A 557 PHE A 558 0 SHEET 2 AA7 2 LEU A 596 ALA A 597 -1 O ALA A 597 N ILE A 557 SHEET 1 AA8 2 GLU A 588 THR A 589 0 SHEET 2 AA8 2 GLY A 592 VAL A 593 -1 O GLY A 592 N THR A 589 SHEET 1 AA9 2 VAL A 623 TYR A 624 0 SHEET 2 AA9 2 TYR A 673 TYR A 674 -1 O TYR A 674 N VAL A 623 SHEET 1 AB1 3 LEU A 711 SER A 714 0 SHEET 2 AB1 3 GLY A 717 VAL A 720 -1 O VAL A 719 N LYS A 712 SHEET 3 AB1 3 THR A 768 ILE A 769 -1 O ILE A 769 N LEU A 718 CISPEP 1 GLN A 47 PRO A 48 0 3.31 CISPEP 2 ALA A 93 PRO A 94 0 4.84 CISPEP 3 GLU A 96 PRO A 97 0 -3.33 CISPEP 4 ALA A 597 PRO A 598 0 -12.71 CISPEP 5 GLY A 654 PRO A 655 0 10.63 SITE 1 AC1 10 ARG A 341 TYR A 624 HIS A 626 ASN A 672 SITE 2 AC1 10 THR A 694 GLY A 695 GOL A 808 HOH A 945 SITE 3 AC1 10 HOH A 952 HOH A1207 SITE 1 AC2 7 TRP A 167 GLN A 190 ASP A 472 ARG A 609 SITE 2 AC2 7 LYS A 613 HOH A1102 HOH A1200 SITE 1 AC3 6 GLN A 12 ASN A 104 SER A 106 HIS A 117 SITE 2 AC3 6 HOH A1009 HOH A1226 SITE 1 AC4 6 ASN A 244 LEU A 246 HIS A 681 HOH A 902 SITE 2 AC4 6 HOH A 923 HOH A1176 SITE 1 AC5 3 ARG A 10 LYS A 298 GLN A 302 SITE 1 AC6 5 ARG A 99 GLY A 228 LEU A 229 HIS A 230 SITE 2 AC6 5 HOH A1096 SITE 1 AC7 7 THR A 343 ASP A 345 GLN A 347 LYS A 396 SITE 2 AC7 7 ASN A 399 HOH A 935 HOH A1203 SITE 1 AC8 8 ARG A 349 TRP A 470 ASP A 472 GLU A 619 SITE 2 AC8 8 TYR A 624 SO4 A 801 HOH A1129 HOH A1255 SITE 1 AC9 6 LYS A 111 LYS A 309 ASN A 326 HIS A 327 SITE 2 AC9 6 PRO A 330 ARG A 331 SITE 1 AD1 2 ARG A 538 ASN A 560 CRYST1 106.934 106.934 185.345 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009352 0.005399 0.000000 0.00000 SCALE2 0.000000 0.010798 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005395 0.00000