HEADER TRANSFERASE/TRANSFERASE INHIBITOR 01-MAY-15 4ZLO TITLE SERINE/THREONINE-PROTEIN KINASE PAK1 COMPLEXED WITH A TITLE 2 DIBENZODIAZEPINE: IDENTIFICATION OF AN ALLOSTERIC SITE ON PAK1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PAK 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ALPHA-PAK,P21-ACTIVATED KINASE 1,PAK-1,P65-PAK; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: RESIDUE 177 IS PHOSPHORYLATED THREONINE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PAK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DIBENZODAZEPINE, PAK1, KINASE, ALLOSTERIC INHIBITOR, TRANSFERASE- KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.R.BELLAMACINA,D.E.BUSSIERE REVDAT 2 23-OCT-24 4ZLO 1 REMARK REVDAT 1 05-AUG-15 4ZLO 0 JRNL AUTH A.S.KARPOV,P.AMIRI,C.BELLAMACINA,M.H.BELLANCE, JRNL AUTH 2 W.BREITENSTEIN,D.DANIEL,R.DENAY,D.FABBRO,C.FERNANDEZ, JRNL AUTH 3 I.GALUBA,S.GUERRO-LAGASSE,S.GUTMANN,L.HINH,W.JAHNKE,J.KLOPP, JRNL AUTH 4 A.LAI,M.K.LINDVALL,S.MA,H.MOBITZ,S.PECCHI,G.RUMMEL, JRNL AUTH 5 K.SHOEMAKER,J.TRAPPE,C.VOLIVA,S.W.COWAN-JACOB,A.L.MARZINZIK JRNL TITL OPTIMIZATION OF A DIBENZODIAZEPINE HIT TO A POTENT AND JRNL TITL 2 SELECTIVE ALLOSTERIC PAK1 INHIBITOR. JRNL REF ACS MED.CHEM.LETT. V. 6 776 2015 JRNL REFN ISSN 1948-5875 JRNL PMID 26191365 JRNL DOI 10.1021/ACSMEDCHEMLETT.5B00102 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 21368 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1081 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 11 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.62 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.80 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2668 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2125 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2545 REMARK 3 BIN R VALUE (WORKING SET) : 0.2094 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.61 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 123 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4083 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 121 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 64.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.55140 REMARK 3 B22 (A**2) : -1.92110 REMARK 3 B33 (A**2) : 4.47250 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -7.53590 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.315 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.459 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.243 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.477 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.248 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4182 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5674 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1429 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 94 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 616 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4182 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 581 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 1 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4808 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.13 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.82 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.01 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 32.1159 5.1771 -14.5141 REMARK 3 T TENSOR REMARK 3 T11: -0.1117 T22: -0.1162 REMARK 3 T33: -0.1139 T12: -0.0430 REMARK 3 T13: 0.0110 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 1.3221 L22: 2.0107 REMARK 3 L33: 2.0864 L12: -0.6516 REMARK 3 L13: -0.6135 L23: -0.4407 REMARK 3 S TENSOR REMARK 3 S11: 0.0182 S12: 0.2234 S13: 0.0221 REMARK 3 S21: -0.1094 S22: -0.0894 S23: -0.1582 REMARK 3 S31: 0.1047 S32: -0.0706 S33: 0.0712 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -1.8321 0.9761 13.3558 REMARK 3 T TENSOR REMARK 3 T11: -0.1796 T22: -0.1233 REMARK 3 T33: -0.2129 T12: -0.0661 REMARK 3 T13: 0.0196 T23: -0.0205 REMARK 3 L TENSOR REMARK 3 L11: 3.3059 L22: 2.6534 REMARK 3 L33: 3.0827 L12: -0.3145 REMARK 3 L13: -1.2150 L23: -0.5203 REMARK 3 S TENSOR REMARK 3 S11: -0.1795 S12: 0.1178 S13: -0.3218 REMARK 3 S21: 0.0255 S22: 0.0012 S23: 0.2681 REMARK 3 S31: -0.0143 S32: -0.4136 S33: 0.1783 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZLO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000209430. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21368 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 62.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.41500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22-27% PEG3350, 500-700MM NACL, 100MM REMARK 280 BIS-TRIS, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.67000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 20.45001 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -62.52991 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 249 REMARK 465 GLY A 279 REMARK 465 ALA A 280 REMARK 465 LEU A 303 REMARK 465 GLN A 304 REMARK 465 GLN A 305 REMARK 465 GLN A 306 REMARK 465 PRO A 307 REMARK 465 PHE A 410 REMARK 465 CYS A 411 REMARK 465 ALA A 412 REMARK 465 GLN A 413 REMARK 465 ILE A 414 REMARK 465 THR A 415 REMARK 465 PRO A 416 REMARK 465 GLU A 417 REMARK 465 GLN A 418 REMARK 465 ASN A 544 REMARK 465 HIS A 545 REMARK 465 SER B 249 REMARK 465 ASP B 250 REMARK 465 GLU B 251 REMARK 465 GLU B 252 REMARK 465 GLY B 264 REMARK 465 ASP B 265 REMARK 465 PRO B 266 REMARK 465 GLY B 279 REMARK 465 ALA B 280 REMARK 465 SER B 281 REMARK 465 GLY B 282 REMARK 465 THR B 283 REMARK 465 ASP B 289 REMARK 465 VAL B 290 REMARK 465 ALA B 291 REMARK 465 THR B 292 REMARK 465 ASN B 302 REMARK 465 LEU B 303 REMARK 465 GLN B 304 REMARK 465 GLN B 305 REMARK 465 GLN B 306 REMARK 465 PRO B 307 REMARK 465 LYS B 308 REMARK 465 LYS B 309 REMARK 465 LEU B 335 REMARK 465 VAL B 336 REMARK 465 GLY B 337 REMARK 465 ASP B 338 REMARK 465 GLU B 339 REMARK 465 LEU B 340 REMARK 465 TRP B 341 REMARK 465 ASN B 544 REMARK 465 HIS B 545 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 250 CG OD1 OD2 REMARK 470 GLU A 251 CG CD OE1 OE2 REMARK 470 GLU A 252 CG CD OE1 OE2 REMARK 470 ILE A 253 CG1 CG2 CD1 REMARK 470 LEU A 254 CG CD1 CD2 REMARK 470 GLU A 255 CG CD OE1 OE2 REMARK 470 LYS A 256 CG CD CE NZ REMARK 470 GLU A 274 CG CD OE1 OE2 REMARK 470 GLN A 278 CG CD OE1 NE2 REMARK 470 LYS A 308 CG CD CE NZ REMARK 470 LYS A 309 CG CD CE NZ REMARK 470 GLU A 310 CG CD OE1 OE2 REMARK 470 LEU A 311 CG CD1 CD2 REMARK 470 VAL A 336 CG1 CG2 REMARK 470 ASP A 338 CG OD1 OD2 REMARK 470 GLN A 384 CG CD OE1 NE2 REMARK 470 VAL A 425 CG1 CG2 REMARK 470 GLU A 461 CG CD OE1 OE2 REMARK 470 ASN A 466 CG OD1 ND2 REMARK 470 GLU A 483 CG CD OE1 OE2 REMARK 470 GLN A 485 CG CD OE1 NE2 REMARK 470 GLU A 488 CG CD OE1 OE2 REMARK 470 LYS A 489 CG CD CE NZ REMARK 470 LYS A 542 CG CD CE NZ REMARK 470 ASN A 543 CG OD1 ND2 REMARK 470 GLU B 255 CG CD OE1 OE2 REMARK 470 LEU B 257 CG CD1 CD2 REMARK 470 ARG B 258 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 267 CG CD CE NZ REMARK 470 LYS B 268 CG CD CE NZ REMARK 470 LYS B 269 CG CD CE NZ REMARK 470 ARG B 272 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 274 CG CD OE1 OE2 REMARK 470 LYS B 275 CG CD CE NZ REMARK 470 GLN B 278 CG CD OE1 NE2 REMARK 470 MET B 288 CG SD CE REMARK 470 GLN B 294 CG CD OE1 NE2 REMARK 470 GLU B 295 CG CD OE1 OE2 REMARK 470 LYS B 299 CG CD CE NZ REMARK 470 MET B 301 CG SD CE REMARK 470 GLU B 310 CG CD OE1 OE2 REMARK 470 LEU B 311 CG CD1 CD2 REMARK 470 GLU B 417 CG CD OE1 OE2 REMARK 470 GLN B 418 CG CD OE1 NE2 REMARK 470 GLU B 507 CG CD OE1 OE2 REMARK 470 LYS B 508 CD CE NZ REMARK 470 GLN B 519 CG CD OE1 NE2 REMARK 470 LYS B 522 CG CD CE NZ REMARK 470 ASN B 543 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 388 -16.11 80.12 REMARK 500 ASP A 407 -83.67 -146.97 REMARK 500 PHE A 408 -28.03 75.06 REMARK 500 LYS B 256 22.64 -74.47 REMARK 500 ASP B 389 47.64 -149.60 REMARK 500 ASP B 407 83.71 60.63 REMARK 500 ASP B 407 83.44 61.11 REMARK 500 GLN B 418 75.17 -154.98 REMARK 500 PRO B 428 -52.52 -27.89 REMARK 500 THR B 541 51.73 -97.91 REMARK 500 LYS B 542 35.22 -94.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4PV A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ZJJ RELATED DB: PDB REMARK 900 4ZJJ CONTAINS THE SAME PROTEIN COMPLEXED WITH AN ANALOG REMARK 900 RELATED ID: 4ZJI RELATED DB: PDB REMARK 900 4ZJJ CONTAINS THE SAME PROTEIN COMPLEXED WITH AN ANALOG DBREF 4ZLO A 249 545 UNP Q13153 PAK1_HUMAN 249 545 DBREF 4ZLO B 249 545 UNP Q13153 PAK1_HUMAN 249 545 SEQRES 1 A 297 SER ASP GLU GLU ILE LEU GLU LYS LEU ARG SER ILE VAL SEQRES 2 A 297 SER VAL GLY ASP PRO LYS LYS LYS TYR THR ARG PHE GLU SEQRES 3 A 297 LYS ILE GLY GLN GLY ALA SER GLY THR VAL TYR THR ALA SEQRES 4 A 297 MET ASP VAL ALA THR GLY GLN GLU VAL ALA ILE LYS GLN SEQRES 5 A 297 MET ASN LEU GLN GLN GLN PRO LYS LYS GLU LEU ILE ILE SEQRES 6 A 297 ASN GLU ILE LEU VAL MET ARG GLU ASN LYS ASN PRO ASN SEQRES 7 A 297 ILE VAL ASN TYR LEU ASP SER TYR LEU VAL GLY ASP GLU SEQRES 8 A 297 LEU TRP VAL VAL MET GLU TYR LEU ALA GLY GLY SER LEU SEQRES 9 A 297 THR ASP VAL VAL THR GLU THR CYS MET ASP GLU GLY GLN SEQRES 10 A 297 ILE ALA ALA VAL CYS ARG GLU CYS LEU GLN ALA LEU GLU SEQRES 11 A 297 PHE LEU HIS SER ASN GLN VAL ILE HIS ARG ASP ILE LYS SEQRES 12 A 297 SER ASP ASN ILE LEU LEU GLY MET ASP GLY SER VAL LYS SEQRES 13 A 297 LEU THR ASP PHE GLY PHE CYS ALA GLN ILE THR PRO GLU SEQRES 14 A 297 GLN SER LYS ARG SER TPO MET VAL GLY THR PRO TYR TRP SEQRES 15 A 297 MET ALA PRO GLU VAL VAL THR ARG LYS ALA TYR GLY PRO SEQRES 16 A 297 LYS VAL ASP ILE TRP SER LEU GLY ILE MET ALA ILE GLU SEQRES 17 A 297 MET ILE GLU GLY GLU PRO PRO TYR LEU ASN GLU ASN PRO SEQRES 18 A 297 LEU ARG ALA LEU TYR LEU ILE ALA THR ASN GLY THR PRO SEQRES 19 A 297 GLU LEU GLN ASN PRO GLU LYS LEU SER ALA ILE PHE ARG SEQRES 20 A 297 ASP PHE LEU ASN ARG CYS LEU GLU MET ASP VAL GLU LYS SEQRES 21 A 297 ARG GLY SER ALA LYS GLU LEU LEU GLN HIS GLN PHE LEU SEQRES 22 A 297 LYS ILE ALA LYS PRO LEU SER SER LEU THR PRO LEU ILE SEQRES 23 A 297 ALA ALA ALA LYS GLU ALA THR LYS ASN ASN HIS SEQRES 1 B 297 SER ASP GLU GLU ILE LEU GLU LYS LEU ARG SER ILE VAL SEQRES 2 B 297 SER VAL GLY ASP PRO LYS LYS LYS TYR THR ARG PHE GLU SEQRES 3 B 297 LYS ILE GLY GLN GLY ALA SER GLY THR VAL TYR THR ALA SEQRES 4 B 297 MET ASP VAL ALA THR GLY GLN GLU VAL ALA ILE LYS GLN SEQRES 5 B 297 MET ASN LEU GLN GLN GLN PRO LYS LYS GLU LEU ILE ILE SEQRES 6 B 297 ASN GLU ILE LEU VAL MET ARG GLU ASN LYS ASN PRO ASN SEQRES 7 B 297 ILE VAL ASN TYR LEU ASP SER TYR LEU VAL GLY ASP GLU SEQRES 8 B 297 LEU TRP VAL VAL MET GLU TYR LEU ALA GLY GLY SER LEU SEQRES 9 B 297 THR ASP VAL VAL THR GLU THR CYS MET ASP GLU GLY GLN SEQRES 10 B 297 ILE ALA ALA VAL CYS ARG GLU CYS LEU GLN ALA LEU GLU SEQRES 11 B 297 PHE LEU HIS SER ASN GLN VAL ILE HIS ARG ASP ILE LYS SEQRES 12 B 297 SER ASP ASN ILE LEU LEU GLY MET ASP GLY SER VAL LYS SEQRES 13 B 297 LEU THR ASP PHE GLY PHE CYS ALA GLN ILE THR PRO GLU SEQRES 14 B 297 GLN SER LYS ARG SER TPO MET VAL GLY THR PRO TYR TRP SEQRES 15 B 297 MET ALA PRO GLU VAL VAL THR ARG LYS ALA TYR GLY PRO SEQRES 16 B 297 LYS VAL ASP ILE TRP SER LEU GLY ILE MET ALA ILE GLU SEQRES 17 B 297 MET ILE GLU GLY GLU PRO PRO TYR LEU ASN GLU ASN PRO SEQRES 18 B 297 LEU ARG ALA LEU TYR LEU ILE ALA THR ASN GLY THR PRO SEQRES 19 B 297 GLU LEU GLN ASN PRO GLU LYS LEU SER ALA ILE PHE ARG SEQRES 20 B 297 ASP PHE LEU ASN ARG CYS LEU GLU MET ASP VAL GLU LYS SEQRES 21 B 297 ARG GLY SER ALA LYS GLU LEU LEU GLN HIS GLN PHE LEU SEQRES 22 B 297 LYS ILE ALA LYS PRO LEU SER SER LEU THR PRO LEU ILE SEQRES 23 B 297 ALA ALA ALA LYS GLU ALA THR LYS ASN ASN HIS MODRES 4ZLO TPO A 423 THR MODIFIED RESIDUE MODRES 4ZLO TPO B 423 THR MODIFIED RESIDUE HET TPO A 423 11 HET TPO B 423 11 HET 4PV A 601 24 HET GOL A 602 6 HETNAM TPO PHOSPHOTHREONINE HETNAM 4PV 2,8-DIFLUORO-11-(4-METHYLPIPERAZIN-1-YL)-5H-DIBENZO[B, HETNAM 2 4PV E][1,4]DIAZEPINE HETNAM GOL GLYCEROL HETSYN TPO PHOSPHONOTHREONINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 TPO 2(C4 H10 N O6 P) FORMUL 3 4PV C18 H18 F2 N4 FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *121(H2 O) HELIX 1 AA1 ASP A 250 VAL A 261 1 12 HELIX 2 AA2 ASP A 265 LYS A 269 1 5 HELIX 3 AA3 LYS A 309 ASN A 322 1 14 HELIX 4 AA4 SER A 351 THR A 359 1 9 HELIX 5 AA5 ASP A 362 ASN A 383 1 22 HELIX 6 AA6 LYS A 391 ASP A 393 5 3 HELIX 7 AA7 ALA A 432 THR A 437 1 6 HELIX 8 AA8 PRO A 443 GLY A 460 1 18 HELIX 9 AA9 ASN A 468 GLY A 480 1 13 HELIX 10 AB1 ASN A 486 LEU A 490 5 5 HELIX 11 AB2 SER A 491 LEU A 502 1 12 HELIX 12 AB3 SER A 511 LEU A 516 1 6 HELIX 13 AB4 GLN A 517 ALA A 524 5 8 HELIX 14 AB5 PRO A 526 SER A 529 5 4 HELIX 15 AB6 LEU A 530 THR A 541 1 12 HELIX 16 AB7 LEU B 311 ASN B 322 1 12 HELIX 17 AB8 SER B 351 THR B 359 1 9 HELIX 18 AB9 ASP B 362 ASN B 383 1 22 HELIX 19 AC1 LYS B 391 ASP B 393 5 3 HELIX 20 AC2 THR B 415 SER B 419 5 5 HELIX 21 AC3 THR B 427 MET B 431 5 5 HELIX 22 AC4 ALA B 432 THR B 437 1 6 HELIX 23 AC5 PRO B 443 GLY B 460 1 18 HELIX 24 AC6 ASN B 468 GLY B 480 1 13 HELIX 25 AC7 ASN B 486 LEU B 490 5 5 HELIX 26 AC8 SER B 491 LEU B 502 1 12 HELIX 27 AC9 SER B 511 LEU B 516 1 6 HELIX 28 AD1 GLN B 517 ALA B 524 5 8 HELIX 29 AD2 PRO B 526 SER B 529 5 4 HELIX 30 AD3 LEU B 530 THR B 541 1 12 SHEET 1 AA1 5 TYR A 270 GLY A 277 0 SHEET 2 AA1 5 THR A 283 ASP A 289 -1 O VAL A 284 N ILE A 276 SHEET 3 AA1 5 GLU A 295 MET A 301 -1 O GLN A 300 N THR A 283 SHEET 4 AA1 5 GLU A 339 GLU A 345 -1 O MET A 344 N ALA A 297 SHEET 5 AA1 5 TYR A 330 VAL A 336 -1 N LEU A 331 O VAL A 343 SHEET 1 AA2 2 ILE A 395 LEU A 397 0 SHEET 2 AA2 2 VAL A 403 LEU A 405 -1 O LYS A 404 N LEU A 396 SHEET 1 AA3 5 GLU B 274 LYS B 275 0 SHEET 2 AA3 5 TYR B 285 ALA B 287 -1 O THR B 286 N GLU B 274 SHEET 3 AA3 5 VAL B 296 ILE B 298 -1 O VAL B 296 N ALA B 287 SHEET 4 AA3 5 VAL B 343 GLU B 345 -1 O MET B 344 N ALA B 297 SHEET 5 AA3 5 TYR B 330 ASP B 332 -1 N ASP B 332 O VAL B 343 SHEET 1 AA4 2 VAL B 385 ILE B 386 0 SHEET 2 AA4 2 ALA B 412 GLN B 413 -1 O ALA B 412 N ILE B 386 SHEET 1 AA5 2 ILE B 395 LEU B 397 0 SHEET 2 AA5 2 VAL B 403 LEU B 405 -1 O LYS B 404 N LEU B 396 LINK C SER A 422 N TPO A 423 1555 1555 1.34 LINK C TPO A 423 N MET A 424 1555 1555 1.33 LINK C SER B 422 N TPO B 423 1555 1555 1.36 LINK C TPO B 423 N MET B 424 1555 1555 1.35 SITE 1 AC1 11 GLU A 315 VAL A 318 MET A 319 ASN A 322 SITE 2 AC1 11 ILE A 327 VAL A 328 ASN A 383 HIS A 387 SITE 3 AC1 11 LEU A 405 THR A 406 GOL A 602 SITE 1 AC2 7 MET A 319 VAL A 328 MET A 344 THR A 406 SITE 2 AC2 7 ASP A 407 PHE A 408 4PV A 601 CRYST1 63.514 79.340 65.789 90.00 108.11 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015745 0.000000 0.005149 0.00000 SCALE2 0.000000 0.012604 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015992 0.00000