HEADER TRANSFERASE 03-MAY-15 4ZME TITLE CRYSTAL STRUCTURE OF THE ALPHA-KINASE DOMAIN OF MYOSIN-II HEAVY CHAIN TITLE 2 KINASE A IN COMPLEX WITH ADENOSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOSIN HEAVY CHAIN KINASE A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 552-841; COMPND 5 SYNONYM: MHCK-A; COMPND 6 EC: 2.7.11.7; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DICTYOSTELIUM DISCOIDEUM; SOURCE 3 ORGANISM_COMMON: SLIME MOLD; SOURCE 4 ORGANISM_TAXID: 44689; SOURCE 5 GENE: MHKA, MHCKA, DDB_G0291231; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ASPARTYL PHOSPHATE INTERMEDIATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.YE,Z.JIA REVDAT 5 27-SEP-23 4ZME 1 REMARK REVDAT 4 08-JAN-20 4ZME 1 REMARK REVDAT 3 07-OCT-15 4ZME 1 JRNL REMARK REVDAT 2 02-SEP-15 4ZME 1 JRNL REVDAT 1 19-AUG-15 4ZME 0 JRNL AUTH Y.YANG,Q.YE,Z.JIA,G.P.COTE JRNL TITL CHARACTERIZATION OF THE CATALYTIC AND NUCLEOTIDE BINDING JRNL TITL 2 PROPERTIES OF THE ALPHA-KINASE DOMAIN OF DICTYOSTELIUM JRNL TITL 3 MYOSIN-II HEAVY CHAIN KINASE A. JRNL REF J.BIOL.CHEM. V. 290 23935 2015 JRNL REFN ESSN 1083-351X JRNL PMID 26260792 JRNL DOI 10.1074/JBC.M115.672410 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 46516 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2480 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2905 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 169 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4079 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 459 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.72000 REMARK 3 B22 (A**2) : 1.25000 REMARK 3 B33 (A**2) : 0.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.178 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.153 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.132 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.881 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4232 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4091 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5715 ; 1.490 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9470 ; 0.942 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 513 ; 6.480 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 172 ;35.632 ;25.233 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 770 ;13.848 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;17.769 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 629 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4639 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 909 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2064 ; 2.392 ; 3.486 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2063 ; 2.393 ; 3.483 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2573 ; 3.768 ; 5.208 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 551 809 B 551 809 15283 0.100 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4ZME COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000209355. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : HORIZONTALLY FOCUSING REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : WHITE BEAM COLLIMATING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51052 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 79.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.450 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3LKM REMARK 200 REMARK 200 REMARK: PLATE SHAPE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, SODIUM PHOSPHATE, REMARK 280 CACODYLATE, PH 7.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 41.59700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.64400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.59700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.64400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 535 REMARK 465 GLY A 536 REMARK 465 GLY A 537 REMARK 465 HIS A 538 REMARK 465 HIS A 539 REMARK 465 HIS A 540 REMARK 465 HIS A 541 REMARK 465 HIS A 542 REMARK 465 HIS A 543 REMARK 465 GLY A 544 REMARK 465 GLU A 545 REMARK 465 ASN A 546 REMARK 465 LEU A 547 REMARK 465 TYR A 548 REMARK 465 PHE A 549 REMARK 465 GLN A 550 REMARK 465 GLU A 650 REMARK 465 ALA A 651 REMARK 465 GLU A 652 REMARK 465 ASN A 816 REMARK 465 ASN A 817 REMARK 465 LYS A 818 REMARK 465 LYS A 819 REMARK 465 GLN A 820 REMARK 465 LEU A 821 REMARK 465 GLN A 822 REMARK 465 GLN A 823 REMARK 465 GLY A 824 REMARK 465 THR A 825 REMARK 465 MET A 826 REMARK 465 VAL A 827 REMARK 465 MET A 828 REMARK 465 PRO A 829 REMARK 465 ASP A 830 REMARK 465 ILE A 831 REMARK 465 LEU A 832 REMARK 465 PRO A 833 REMARK 465 GLU A 834 REMARK 465 LEU A 835 REMARK 465 MET A 836 REMARK 465 PRO A 837 REMARK 465 SER A 838 REMARK 465 ASP A 839 REMARK 465 ASN A 840 REMARK 465 THR A 841 REMARK 465 MET B 535 REMARK 465 GLY B 536 REMARK 465 GLY B 537 REMARK 465 HIS B 538 REMARK 465 HIS B 539 REMARK 465 HIS B 540 REMARK 465 HIS B 541 REMARK 465 HIS B 542 REMARK 465 HIS B 543 REMARK 465 GLY B 544 REMARK 465 GLU B 545 REMARK 465 ASN B 546 REMARK 465 LEU B 547 REMARK 465 TYR B 548 REMARK 465 PHE B 549 REMARK 465 GLN B 550 REMARK 465 GLU B 650 REMARK 465 ALA B 651 REMARK 465 GLU B 652 REMARK 465 GLN B 653 REMARK 465 GLN B 654 REMARK 465 GLY B 811 REMARK 465 VAL B 812 REMARK 465 LEU B 813 REMARK 465 SER B 814 REMARK 465 GLY B 815 REMARK 465 ASN B 816 REMARK 465 ASN B 817 REMARK 465 LYS B 818 REMARK 465 LYS B 819 REMARK 465 GLN B 820 REMARK 465 LEU B 821 REMARK 465 GLN B 822 REMARK 465 GLN B 823 REMARK 465 GLY B 824 REMARK 465 THR B 825 REMARK 465 MET B 826 REMARK 465 VAL B 827 REMARK 465 MET B 828 REMARK 465 PRO B 829 REMARK 465 ASP B 830 REMARK 465 ILE B 831 REMARK 465 LEU B 832 REMARK 465 PRO B 833 REMARK 465 GLU B 834 REMARK 465 LEU B 835 REMARK 465 MET B 836 REMARK 465 PRO B 837 REMARK 465 SER B 838 REMARK 465 ASP B 839 REMARK 465 ASN B 840 REMARK 465 THR B 841 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1205 O HOH A 1245 2.15 REMARK 500 O HOH A 1132 O HOH A 1323 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS B 800 CA - CB - SG ANGL. DEV. = 8.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 727 49.38 -149.56 REMARK 500 TYR B 727 50.47 -149.09 REMARK 500 VAL B 755 -162.42 -127.79 REMARK 500 ASP B 761 -127.07 59.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 742 ND1 REMARK 620 2 HIS A 794 NE2 106.5 REMARK 620 3 CYS A 796 SG 97.3 109.2 REMARK 620 4 CYS A 800 SG 114.2 113.3 115.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 742 ND1 REMARK 620 2 HIS B 794 NE2 103.6 REMARK 620 3 CYS B 796 SG 98.3 106.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADN B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE B 905 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LLA RELATED DB: PDB REMARK 900 3LLA CONTAINS THE SAME PROTEIN COMPLEXED WITH AMP-PCP. REMARK 900 RELATED ID: 3LMH RELATED DB: PDB REMARK 900 3LMH CONTAINS THE SAME PROTEIN COMPLEXED WITH ADP. REMARK 900 RELATED ID: 3LKM RELATED DB: PDB REMARK 900 3LKM CONTAINS THE SAME PROTEIN COMPLEXED WITH AMP. REMARK 900 RELATED ID: 3LMI RELATED DB: PDB REMARK 900 3LMI CONTAINS THE SAME PROTEIN WITH MUTATION OF D766S COMPLEXED REMARK 900 WITH ATP. REMARK 900 RELATED ID: 3PDT RELATED DB: PDB REMARK 900 3PDT CONTAINS THE SAME PROTEIN WITH C-TERMINAL TRUNCATED 32 REMARK 900 RESIDUES. DBREF 4ZME A 552 841 UNP P42527 MHCKA_DICDI 552 841 DBREF 4ZME B 552 841 UNP P42527 MHCKA_DICDI 552 841 SEQADV 4ZME MET A 535 UNP P42527 INITIATING METHIONINE SEQADV 4ZME GLY A 536 UNP P42527 EXPRESSION TAG SEQADV 4ZME GLY A 537 UNP P42527 EXPRESSION TAG SEQADV 4ZME HIS A 538 UNP P42527 EXPRESSION TAG SEQADV 4ZME HIS A 539 UNP P42527 EXPRESSION TAG SEQADV 4ZME HIS A 540 UNP P42527 EXPRESSION TAG SEQADV 4ZME HIS A 541 UNP P42527 EXPRESSION TAG SEQADV 4ZME HIS A 542 UNP P42527 EXPRESSION TAG SEQADV 4ZME HIS A 543 UNP P42527 EXPRESSION TAG SEQADV 4ZME GLY A 544 UNP P42527 EXPRESSION TAG SEQADV 4ZME GLU A 545 UNP P42527 EXPRESSION TAG SEQADV 4ZME ASN A 546 UNP P42527 EXPRESSION TAG SEQADV 4ZME LEU A 547 UNP P42527 EXPRESSION TAG SEQADV 4ZME TYR A 548 UNP P42527 EXPRESSION TAG SEQADV 4ZME PHE A 549 UNP P42527 EXPRESSION TAG SEQADV 4ZME GLN A 550 UNP P42527 EXPRESSION TAG SEQADV 4ZME GLY A 551 UNP P42527 EXPRESSION TAG SEQADV 4ZME MET B 535 UNP P42527 INITIATING METHIONINE SEQADV 4ZME GLY B 536 UNP P42527 EXPRESSION TAG SEQADV 4ZME GLY B 537 UNP P42527 EXPRESSION TAG SEQADV 4ZME HIS B 538 UNP P42527 EXPRESSION TAG SEQADV 4ZME HIS B 539 UNP P42527 EXPRESSION TAG SEQADV 4ZME HIS B 540 UNP P42527 EXPRESSION TAG SEQADV 4ZME HIS B 541 UNP P42527 EXPRESSION TAG SEQADV 4ZME HIS B 542 UNP P42527 EXPRESSION TAG SEQADV 4ZME HIS B 543 UNP P42527 EXPRESSION TAG SEQADV 4ZME GLY B 544 UNP P42527 EXPRESSION TAG SEQADV 4ZME GLU B 545 UNP P42527 EXPRESSION TAG SEQADV 4ZME ASN B 546 UNP P42527 EXPRESSION TAG SEQADV 4ZME LEU B 547 UNP P42527 EXPRESSION TAG SEQADV 4ZME TYR B 548 UNP P42527 EXPRESSION TAG SEQADV 4ZME PHE B 549 UNP P42527 EXPRESSION TAG SEQADV 4ZME GLN B 550 UNP P42527 EXPRESSION TAG SEQADV 4ZME GLY B 551 UNP P42527 EXPRESSION TAG SEQRES 1 A 307 MET GLY GLY HIS HIS HIS HIS HIS HIS GLY GLU ASN LEU SEQRES 2 A 307 TYR PHE GLN GLY ILE SER SER GLU THR GLY GLU MET GLY SEQRES 3 A 307 ILE LEU TRP GLU PHE ASP PRO ILE ILE ASN LYS TRP ILE SEQRES 4 A 307 ARG LEU SER MET LYS LEU LYS VAL GLU ARG LYS PRO PHE SEQRES 5 A 307 ALA GLU GLY ALA LEU ARG GLU ALA TYR HIS THR VAL SER SEQRES 6 A 307 LEU GLY VAL GLY THR ASP GLU ASN TYR PRO LEU GLY THR SEQRES 7 A 307 THR THR LYS LEU PHE PRO PRO ILE GLU MET ILE SER PRO SEQRES 8 A 307 ILE SER LYS ASN ASN GLU ALA MET THR GLN LEU LYS ASN SEQRES 9 A 307 GLY THR LYS PHE VAL LEU LYS LEU TYR LYS LYS GLU ALA SEQRES 10 A 307 GLU GLN GLN ALA SER ARG GLU LEU TYR PHE GLU ASP VAL SEQRES 11 A 307 LYS MET GLN MET VAL CYS ARG ASP TRP GLY ASN LYS PHE SEQRES 12 A 307 ASN GLN LYS LYS PRO PRO LYS LYS ILE GLU PHE LEU MET SEQRES 13 A 307 SER TRP VAL VAL GLU LEU ILE ASP ARG SER PRO SER SER SEQRES 14 A 307 ASN GLY GLN PRO ILE LEU CYS SER ILE GLU PRO LEU LEU SEQRES 15 A 307 VAL GLY GLU PHE LYS LYS ASN ASN SER ASN TYR GLY ALA SEQRES 16 A 307 VAL LEU THR ASN ARG SER THR PRO GLN ALA PHE SER HIS SEQRES 17 A 307 PHE THR TYR GLU LEU SER ASN LYS GLN MET ILE VAL VAL SEQRES 18 A 307 ASP ILE GLN GLY VAL ASP ASP LEU TYR THR PHD PRO GLN SEQRES 19 A 307 ILE HIS THR PRO ASP GLY LYS GLY PHE GLY LEU GLY ASN SEQRES 20 A 307 LEU GLY LYS ALA GLY ILE ASN LYS PHE ILE THR THR HIS SEQRES 21 A 307 LYS CYS ASN ALA VAL CYS ALA LEU LEU ASP LEU ASP VAL SEQRES 22 A 307 LYS LEU GLY GLY VAL LEU SER GLY ASN ASN LYS LYS GLN SEQRES 23 A 307 LEU GLN GLN GLY THR MET VAL MET PRO ASP ILE LEU PRO SEQRES 24 A 307 GLU LEU MET PRO SER ASP ASN THR SEQRES 1 B 307 MET GLY GLY HIS HIS HIS HIS HIS HIS GLY GLU ASN LEU SEQRES 2 B 307 TYR PHE GLN GLY ILE SER SER GLU THR GLY GLU MET GLY SEQRES 3 B 307 ILE LEU TRP GLU PHE ASP PRO ILE ILE ASN LYS TRP ILE SEQRES 4 B 307 ARG LEU SER MET LYS LEU LYS VAL GLU ARG LYS PRO PHE SEQRES 5 B 307 ALA GLU GLY ALA LEU ARG GLU ALA TYR HIS THR VAL SER SEQRES 6 B 307 LEU GLY VAL GLY THR ASP GLU ASN TYR PRO LEU GLY THR SEQRES 7 B 307 THR THR LYS LEU PHE PRO PRO ILE GLU MET ILE SER PRO SEQRES 8 B 307 ILE SER LYS ASN ASN GLU ALA MET THR GLN LEU LYS ASN SEQRES 9 B 307 GLY THR LYS PHE VAL LEU LYS LEU TYR LYS LYS GLU ALA SEQRES 10 B 307 GLU GLN GLN ALA SER ARG GLU LEU TYR PHE GLU ASP VAL SEQRES 11 B 307 LYS MET GLN MET VAL CYS ARG ASP TRP GLY ASN LYS PHE SEQRES 12 B 307 ASN GLN LYS LYS PRO PRO LYS LYS ILE GLU PHE LEU MET SEQRES 13 B 307 SER TRP VAL VAL GLU LEU ILE ASP ARG SER PRO SER SER SEQRES 14 B 307 ASN GLY GLN PRO ILE LEU CYS SER ILE GLU PRO LEU LEU SEQRES 15 B 307 VAL GLY GLU PHE LYS LYS ASN ASN SER ASN TYR GLY ALA SEQRES 16 B 307 VAL LEU THR ASN ARG SER THR PRO GLN ALA PHE SER HIS SEQRES 17 B 307 PHE THR TYR GLU LEU SER ASN LYS GLN MET ILE VAL VAL SEQRES 18 B 307 ASP ILE GLN GLY VAL ASP ASP LEU TYR THR PHD PRO GLN SEQRES 19 B 307 ILE HIS THR PRO ASP GLY LYS GLY PHE GLY LEU GLY ASN SEQRES 20 B 307 LEU GLY LYS ALA GLY ILE ASN LYS PHE ILE THR THR HIS SEQRES 21 B 307 LYS CYS ASN ALA VAL CYS ALA LEU LEU ASP LEU ASP VAL SEQRES 22 B 307 LYS LEU GLY GLY VAL LEU SER GLY ASN ASN LYS LYS GLN SEQRES 23 B 307 LEU GLN GLN GLY THR MET VAL MET PRO ASP ILE LEU PRO SEQRES 24 B 307 GLU LEU MET PRO SER ASP ASN THR MODRES 4ZME PHD A 766 ASP MODIFIED RESIDUE MODRES 4ZME PHD B 766 ASP MODIFIED RESIDUE HET PHD A 766 12 HET PHD B 766 12 HET ZN A1001 1 HET ADN A1002 19 HET PO4 A1003 5 HET PO4 A1004 5 HET ZN B 901 1 HET ADN B 902 19 HET PO4 B 903 5 HET PO4 B 904 5 HET PGE B 905 10 HETNAM PHD ASPARTYL PHOSPHATE HETNAM ZN ZINC ION HETNAM ADN ADENOSINE HETNAM PO4 PHOSPHATE ION HETNAM PGE TRIETHYLENE GLYCOL FORMUL 1 PHD 2(C4 H8 N O7 P) FORMUL 3 ZN 2(ZN 2+) FORMUL 4 ADN 2(C10 H13 N5 O4) FORMUL 5 PO4 4(O4 P 3-) FORMUL 11 PGE C6 H14 O4 FORMUL 12 HOH *459(H2 O) HELIX 1 AA1 PRO A 619 ILE A 623 5 5 HELIX 2 AA2 GLU A 631 LEU A 636 1 6 HELIX 3 AA3 SER A 656 GLN A 679 1 24 HELIX 4 AA4 SER A 735 SER A 748 1 14 HELIX 5 AA5 LEU A 782 HIS A 794 1 13 HELIX 6 AA6 ASN A 797 LEU A 803 1 7 HELIX 7 AA7 PRO B 619 ILE B 623 5 5 HELIX 8 AA8 GLU B 631 LEU B 636 1 6 HELIX 9 AA9 SER B 656 LYS B 680 1 25 HELIX 10 AB1 SER B 735 SER B 748 1 14 HELIX 11 AB2 LEU B 782 HIS B 794 1 13 HELIX 12 AB3 ASN B 797 LEU B 803 1 7 SHEET 1 AA1 8 ALA A 587 GLU A 588 0 SHEET 2 AA1 8 ARG A 592 THR A 604 -1 O ALA A 594 N ALA A 587 SHEET 3 AA1 8 LYS A 641 TYR A 647 -1 O PHE A 642 N THR A 597 SHEET 4 AA1 8 ILE A 708 PRO A 714 -1 O SER A 711 N LYS A 645 SHEET 5 AA1 8 TRP A 692 LEU A 696 -1 N LEU A 696 O ILE A 708 SHEET 6 AA1 8 GLU A 558 ASP A 566 -1 N TRP A 563 O VAL A 693 SHEET 7 AA1 8 LYS A 571 VAL A 581 -1 O ILE A 573 N GLU A 564 SHEET 8 AA1 8 ARG A 592 THR A 604 -1 O LEU A 600 N LYS A 578 SHEET 1 AA2 4 GLU A 687 PHE A 688 0 SHEET 2 AA2 4 LEU A 763 THR A 765 1 O TYR A 764 N GLU A 687 SHEET 3 AA2 4 GLN A 758 VAL A 760 -1 N GLN A 758 O THR A 765 SHEET 4 AA2 4 LYS A 721 LYS A 722 -1 N LYS A 721 O GLY A 759 SHEET 1 AA3 2 ILE A 753 VAL A 755 0 SHEET 2 AA3 2 GLN A 768 HIS A 770 -1 O GLN A 768 N VAL A 755 SHEET 1 AA4 8 ALA B 587 GLU B 588 0 SHEET 2 AA4 8 ARG B 592 THR B 604 -1 O ALA B 594 N ALA B 587 SHEET 3 AA4 8 LYS B 641 TYR B 647 -1 O PHE B 642 N THR B 597 SHEET 4 AA4 8 LEU B 709 PRO B 714 -1 O SER B 711 N LYS B 645 SHEET 5 AA4 8 TRP B 692 GLU B 695 -1 N TRP B 692 O ILE B 712 SHEET 6 AA4 8 GLU B 558 ASP B 566 -1 N TRP B 563 O VAL B 693 SHEET 7 AA4 8 LYS B 571 VAL B 581 -1 O LEU B 579 N GLU B 558 SHEET 8 AA4 8 ARG B 592 THR B 604 -1 O LEU B 600 N LYS B 578 SHEET 1 AA5 4 GLU B 687 PHE B 688 0 SHEET 2 AA5 4 LEU B 763 THR B 765 1 O TYR B 764 N GLU B 687 SHEET 3 AA5 4 GLN B 758 VAL B 760 -1 N GLN B 758 O THR B 765 SHEET 4 AA5 4 LYS B 721 LYS B 722 -1 N LYS B 721 O GLY B 759 SHEET 1 AA6 2 ILE B 753 VAL B 755 0 SHEET 2 AA6 2 GLN B 768 HIS B 770 -1 O GLN B 768 N VAL B 755 LINK C THR A 765 N PHD A 766 1555 1555 1.33 LINK C PHD A 766 N PRO A 767 1555 1555 1.34 LINK C THR B 765 N PHD B 766 1555 1555 1.33 LINK C PHD B 766 N PRO B 767 1555 1555 1.34 LINK ND1 HIS A 742 ZN ZN A1001 1555 1555 2.17 LINK NE2 HIS A 794 ZN ZN A1001 1555 1555 2.00 LINK SG CYS A 796 ZN ZN A1001 1555 1555 2.43 LINK SG CYS A 800 ZN ZN A1001 1555 1555 2.30 LINK ND1 HIS B 742 ZN ZN B 901 1555 1555 2.14 LINK NE2 HIS B 794 ZN ZN B 901 1555 1555 2.10 LINK SG CYS B 796 ZN ZN B 901 1555 1555 2.41 CISPEP 1 PHE A 617 PRO A 618 0 0.87 CISPEP 2 PHE B 617 PRO B 618 0 4.90 SITE 1 AC1 4 HIS A 742 HIS A 794 CYS A 796 CYS A 800 SITE 1 AC2 11 ALA A 587 GLU A 588 GLY A 589 VAL A 643 SITE 2 AC2 11 LYS A 645 GLU A 713 PRO A 714 LEU A 716 SITE 3 AC2 11 PHE A 720 HOH A1137 HOH A1186 SITE 1 AC3 7 GLY A 589 ALA A 590 LEU A 591 ARG A 592 SITE 2 AC3 7 PHD A 766 HOH A1148 HOH A1168 SITE 1 AC4 6 LYS A 684 ARG A 734 SER A 735 THR A 736 SITE 2 AC4 6 HOH A1108 HOH A1169 SITE 1 AC5 4 HIS B 742 HIS B 794 CYS B 796 CYS B 800 SITE 1 AC6 10 PHE B 586 ALA B 587 VAL B 643 LYS B 645 SITE 2 AC6 10 GLU B 713 PRO B 714 LEU B 716 PHE B 720 SITE 3 AC6 10 HOH B1004 HOH B1095 SITE 1 AC7 6 GLY B 589 ALA B 590 LEU B 591 ARG B 592 SITE 2 AC7 6 PHD B 766 HOH B1026 SITE 1 AC8 5 LYS B 684 ARG B 734 SER B 735 THR B 736 SITE 2 AC8 5 LYS B 795 SITE 1 AC9 5 HIS B 794 VAL B 807 LYS B 808 LEU B 809 SITE 2 AC9 5 HOH B1005 CRYST1 83.194 111.288 79.560 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012020 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008986 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012569 0.00000