HEADER CELL ADHESION 04-MAY-15 4ZMX TITLE CRYSTAL STRUCTURE OF HUMAN P-CADHERIN (INT-X-DIMER) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CADHERIN-3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 108-320; COMPND 5 SYNONYM: PLACENTAL CADHERIN,P-CADHERIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CDH3, CDHP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: CHAMPION PET SUMO KEYWDS CLASSICAL CADHERIN P-CADHERIN CELL-ADHESION DIMERIZATION KEYWDS 2 CONFORMATIONAL CHANGE, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR J.M.M.CAAVEIRO,S.KUDO,K.TSUMOTO REVDAT 4 08-NOV-23 4ZMX 1 LINK REVDAT 3 19-FEB-20 4ZMX 1 JRNL REMARK REVDAT 2 21-SEP-16 4ZMX 1 JRNL REVDAT 1 07-SEP-16 4ZMX 0 JRNL AUTH S.KUDO,J.M.CAAVEIRO,K.TSUMOTO JRNL TITL ADHESIVE DIMERIZATION OF HUMAN P-CADHERIN CATALYZED BY A JRNL TITL 2 CHAPERONE-LIKE MECHANISM JRNL REF STRUCTURE V. 24 1523 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 27545624 JRNL DOI 10.1016/J.STR.2016.07.002 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 13559 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 717 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 971 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3081 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.06000 REMARK 3 B22 (A**2) : 1.06000 REMARK 3 B33 (A**2) : -3.45000 REMARK 3 B12 (A**2) : 0.53000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.054 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.355 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.277 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 34.940 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.913 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.884 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3154 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2937 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4291 ; 0.927 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6819 ; 0.653 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 401 ; 5.630 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 139 ;30.262 ;25.683 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 516 ;12.502 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;12.885 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 497 ; 0.053 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3534 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 641 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1604 ; 0.619 ; 3.005 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1603 ; 0.619 ; 3.004 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1999 ; 1.132 ; 4.507 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2000 ; 1.131 ; 4.507 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1550 ; 0.477 ; 3.085 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1547 ; 0.477 ; 3.083 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2289 ; 0.884 ; 4.594 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3204 ; 2.808 ;23.275 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3205 ; 2.808 ;23.279 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 213 REMARK 3 ORIGIN FOR THE GROUP (A): 67.8352 0.1301 -12.2104 REMARK 3 T TENSOR REMARK 3 T11: 0.1411 T22: 0.1665 REMARK 3 T33: 0.1722 T12: -0.0044 REMARK 3 T13: -0.0584 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 3.6530 L22: 1.5194 REMARK 3 L33: 1.7496 L12: -0.3415 REMARK 3 L13: -0.8253 L23: 0.0524 REMARK 3 S TENSOR REMARK 3 S11: 0.0911 S12: 0.4493 S13: -0.1755 REMARK 3 S21: -0.1108 S22: -0.0677 S23: 0.5025 REMARK 3 S31: 0.0040 S32: -0.5155 S33: -0.0234 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 213 REMARK 3 ORIGIN FOR THE GROUP (A): 59.3114 4.4115 4.5244 REMARK 3 T TENSOR REMARK 3 T11: 0.1010 T22: 0.1476 REMARK 3 T33: 0.1667 T12: -0.0385 REMARK 3 T13: 0.0201 T23: -0.0349 REMARK 3 L TENSOR REMARK 3 L11: 1.2591 L22: 4.8059 REMARK 3 L33: 2.2481 L12: -0.7145 REMARK 3 L13: 0.5404 L23: -1.4974 REMARK 3 S TENSOR REMARK 3 S11: 0.0395 S12: -0.0612 S13: 0.0531 REMARK 3 S21: 0.1632 S22: -0.0103 S23: 0.0099 REMARK 3 S31: 0.0032 S32: -0.3619 S33: -0.0291 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4ZMX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000209557. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14283 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 43.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.40700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4ZMN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 4,000 10% 2-ISOPROPANOL HEPES REMARK 280 100 MM, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.36500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 20.36500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 20.36500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 1 REMARK 465 ALA A 2 REMARK 465 VAL A 3 REMARK 465 SER A 26 REMARK 465 ASN A 27 REMARK 465 LYS A 28 REMARK 465 ASP A 29 REMARK 465 ARG A 30 REMARK 465 ASP A 31 REMARK 465 THR A 32 REMARK 465 LYS A 33 REMARK 465 ALA A 80 REMARK 465 VAL A 81 REMARK 465 SER A 82 REMARK 465 GLU A 83 REMARK 465 ASN A 84 REMARK 465 GLY A 85 REMARK 465 ALA A 86 REMARK 465 SER A 87 REMARK 465 VAL A 88 REMARK 465 GLU A 89 REMARK 465 ASP B 1 REMARK 465 ALA B 2 REMARK 465 VAL B 3 REMARK 465 VAL B 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 21 -80.61 -98.42 REMARK 500 ALA A 43 -78.14 -104.03 REMARK 500 LEU B 21 -73.45 -116.05 REMARK 500 LYS B 28 81.73 -68.16 REMARK 500 ALA B 43 -82.24 -112.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE1 REMARK 620 2 ASP A 67 OD1 104.8 REMARK 620 3 GLU A 69 OE1 80.1 117.4 REMARK 620 4 ASP A 103 OD2 96.8 125.6 115.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE2 REMARK 620 2 GLU A 69 OE2 109.1 REMARK 620 3 ASP A 100 OD1 79.4 94.2 REMARK 620 4 GLN A 101 O 84.5 166.4 86.6 REMARK 620 5 ASP A 103 OD1 94.3 97.4 168.1 82.7 REMARK 620 6 ASP A 136 OD1 163.7 85.0 108.4 81.9 75.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 102 OD1 REMARK 620 2 HIS A 104 O 106.8 REMARK 620 3 ASP A 134 OD1 143.4 92.0 REMARK 620 4 ASP A 134 OD2 156.1 87.7 51.4 REMARK 620 5 ASP A 136 OD2 74.9 81.2 77.4 127.1 REMARK 620 6 ASN A 143 O 81.3 169.6 77.8 87.0 94.9 REMARK 620 7 ASP A 195 OD2 74.9 90.8 137.3 86.3 144.9 97.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 11 OE1 REMARK 620 2 ASP B 67 OD1 87.8 REMARK 620 3 GLU B 69 OE1 83.0 83.9 REMARK 620 4 ASP B 103 OD2 89.7 174.5 100.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 11 OE2 REMARK 620 2 GLU B 69 OE1 79.6 REMARK 620 3 GLU B 69 OE2 105.0 45.3 REMARK 620 4 ASP B 100 OD1 80.5 115.4 83.3 REMARK 620 5 GLN B 101 O 80.1 147.6 166.8 85.6 REMARK 620 6 ASP B 103 OD1 92.0 76.1 112.0 164.4 79.7 REMARK 620 7 ASP B 136 OD1 164.1 107.6 89.7 107.9 87.0 76.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 102 OD1 REMARK 620 2 HIS B 104 O 109.9 REMARK 620 3 ASP B 134 OD1 147.1 79.1 REMARK 620 4 ASP B 134 OD2 154.9 87.7 51.5 REMARK 620 5 ASP B 136 OD2 73.0 81.8 77.4 128.9 REMARK 620 6 ASN B 143 O 85.8 163.1 84.3 79.6 97.6 REMARK 620 7 ASP B 195 OD2 78.9 90.1 133.7 83.5 145.8 99.3 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ZML RELATED DB: PDB REMARK 900 RELATED ID: 4ZMN RELATED DB: PDB REMARK 900 RELATED ID: 4ZMO RELATED DB: PDB REMARK 900 RELATED ID: 4ZMP RELATED DB: PDB REMARK 900 RELATED ID: 4ZMQ RELATED DB: PDB REMARK 900 RELATED ID: 4ZMT RELATED DB: PDB REMARK 900 RELATED ID: 4ZMV RELATED DB: PDB REMARK 900 RELATED ID: 4ZMW RELATED DB: PDB REMARK 900 RELATED ID: 4ZMY RELATED DB: PDB REMARK 900 RELATED ID: 4ZMZ RELATED DB: PDB DBREF 4ZMX A 1 213 UNP P22223 CADH3_HUMAN 108 320 DBREF 4ZMX B 1 213 UNP P22223 CADH3_HUMAN 108 320 SEQADV 4ZMX ALA A 2 UNP P22223 TRP 109 ENGINEERED MUTATION SEQADV 4ZMX ALA B 2 UNP P22223 TRP 109 ENGINEERED MUTATION SEQRES 1 A 213 ASP ALA VAL VAL ALA PRO ILE SER VAL PRO GLU ASN GLY SEQRES 2 A 213 LYS GLY PRO PHE PRO GLN ARG LEU ASN GLN LEU LYS SER SEQRES 3 A 213 ASN LYS ASP ARG ASP THR LYS ILE PHE TYR SER ILE THR SEQRES 4 A 213 GLY PRO GLY ALA ASP SER PRO PRO GLU GLY VAL PHE ALA SEQRES 5 A 213 VAL GLU LYS GLU THR GLY TRP LEU LEU LEU ASN LYS PRO SEQRES 6 A 213 LEU ASP ARG GLU GLU ILE ALA LYS TYR GLU LEU PHE GLY SEQRES 7 A 213 HIS ALA VAL SER GLU ASN GLY ALA SER VAL GLU ASP PRO SEQRES 8 A 213 MET ASN ILE SER ILE ILE VAL THR ASP GLN ASN ASP HIS SEQRES 9 A 213 LYS PRO LYS PHE THR GLN ASP THR PHE ARG GLY SER VAL SEQRES 10 A 213 LEU GLU GLY VAL LEU PRO GLY THR SER VAL MET GLN VAL SEQRES 11 A 213 THR ALA THR ASP GLU ASP ASP ALA ILE TYR THR TYR ASN SEQRES 12 A 213 GLY VAL VAL ALA TYR SER ILE HIS SER GLN GLU PRO LYS SEQRES 13 A 213 ASP PRO HIS ASP LEU MET PHE THR ILE HIS ARG SER THR SEQRES 14 A 213 GLY THR ILE SER VAL ILE SER SER GLY LEU ASP ARG GLU SEQRES 15 A 213 LYS VAL PRO GLU TYR THR LEU THR ILE GLN ALA THR ASP SEQRES 16 A 213 MET ASP GLY ASP GLY SER THR THR THR ALA VAL ALA VAL SEQRES 17 A 213 VAL GLU ILE LEU ASP SEQRES 1 B 213 ASP ALA VAL VAL ALA PRO ILE SER VAL PRO GLU ASN GLY SEQRES 2 B 213 LYS GLY PRO PHE PRO GLN ARG LEU ASN GLN LEU LYS SER SEQRES 3 B 213 ASN LYS ASP ARG ASP THR LYS ILE PHE TYR SER ILE THR SEQRES 4 B 213 GLY PRO GLY ALA ASP SER PRO PRO GLU GLY VAL PHE ALA SEQRES 5 B 213 VAL GLU LYS GLU THR GLY TRP LEU LEU LEU ASN LYS PRO SEQRES 6 B 213 LEU ASP ARG GLU GLU ILE ALA LYS TYR GLU LEU PHE GLY SEQRES 7 B 213 HIS ALA VAL SER GLU ASN GLY ALA SER VAL GLU ASP PRO SEQRES 8 B 213 MET ASN ILE SER ILE ILE VAL THR ASP GLN ASN ASP HIS SEQRES 9 B 213 LYS PRO LYS PHE THR GLN ASP THR PHE ARG GLY SER VAL SEQRES 10 B 213 LEU GLU GLY VAL LEU PRO GLY THR SER VAL MET GLN VAL SEQRES 11 B 213 THR ALA THR ASP GLU ASP ASP ALA ILE TYR THR TYR ASN SEQRES 12 B 213 GLY VAL VAL ALA TYR SER ILE HIS SER GLN GLU PRO LYS SEQRES 13 B 213 ASP PRO HIS ASP LEU MET PHE THR ILE HIS ARG SER THR SEQRES 14 B 213 GLY THR ILE SER VAL ILE SER SER GLY LEU ASP ARG GLU SEQRES 15 B 213 LYS VAL PRO GLU TYR THR LEU THR ILE GLN ALA THR ASP SEQRES 16 B 213 MET ASP GLY ASP GLY SER THR THR THR ALA VAL ALA VAL SEQRES 17 B 213 VAL GLU ILE LEU ASP HET CA A 301 1 HET CA A 302 1 HET CA A 303 1 HET CA B 301 1 HET CA B 302 1 HET CA B 303 1 HETNAM CA CALCIUM ION FORMUL 3 CA 6(CA 2+) HELIX 1 AA1 MET A 196 ASP A 199 5 4 HELIX 2 AA2 THR B 141 VAL B 145 5 5 HELIX 3 AA3 MET B 196 ASP B 199 5 4 SHEET 1 AA1 4 ILE A 7 PRO A 10 0 SHEET 2 AA1 4 MET A 92 THR A 99 1 O SER A 95 N ILE A 7 SHEET 3 AA1 4 LYS A 73 HIS A 79 -1 N GLY A 78 O MET A 92 SHEET 4 AA1 4 SER A 37 THR A 39 -1 N THR A 39 O PHE A 77 SHEET 1 AA2 3 GLN A 19 GLN A 23 0 SHEET 2 AA2 3 TRP A 59 LEU A 62 -1 O LEU A 62 N GLN A 19 SHEET 3 AA2 3 PHE A 51 VAL A 53 -1 N ALA A 52 O LEU A 61 SHEET 1 AA3 2 LYS A 107 PHE A 108 0 SHEET 2 AA3 2 ALA A 132 THR A 133 -1 O THR A 133 N LYS A 107 SHEET 1 AA4 4 THR A 112 LEU A 118 0 SHEET 2 AA4 4 THR A 202 LEU A 212 1 O VAL A 206 N PHE A 113 SHEET 3 AA4 4 GLU A 186 THR A 194 -1 N TYR A 187 O VAL A 209 SHEET 4 AA4 4 ALA A 147 GLU A 154 -1 N SER A 149 O GLN A 192 SHEET 1 AA5 3 SER A 126 GLN A 129 0 SHEET 2 AA5 3 THR A 171 VAL A 174 -1 O ILE A 172 N VAL A 127 SHEET 3 AA5 3 PHE A 163 ILE A 165 -1 N THR A 164 O SER A 173 SHEET 1 AA6 4 ILE B 7 PRO B 10 0 SHEET 2 AA6 4 MET B 92 THR B 99 1 O ILE B 97 N ILE B 7 SHEET 3 AA6 4 LYS B 73 SER B 82 -1 N LEU B 76 O ILE B 94 SHEET 4 AA6 4 ILE B 34 THR B 39 -1 N PHE B 35 O VAL B 81 SHEET 1 AA7 3 GLN B 19 GLN B 23 0 SHEET 2 AA7 3 TRP B 59 LEU B 62 -1 O LEU B 60 N ASN B 22 SHEET 3 AA7 3 PHE B 51 VAL B 53 -1 N ALA B 52 O LEU B 61 SHEET 1 AA8 2 LYS B 107 PHE B 108 0 SHEET 2 AA8 2 ALA B 132 THR B 133 -1 O THR B 133 N LYS B 107 SHEET 1 AA9 4 THR B 112 LEU B 118 0 SHEET 2 AA9 4 THR B 202 LEU B 212 1 O VAL B 208 N PHE B 113 SHEET 3 AA9 4 GLU B 186 THR B 194 -1 N LEU B 189 O ALA B 207 SHEET 4 AA9 4 ALA B 147 GLU B 154 -1 N GLU B 154 O THR B 188 SHEET 1 AB1 3 SER B 126 GLN B 129 0 SHEET 2 AB1 3 THR B 171 VAL B 174 -1 O ILE B 172 N VAL B 127 SHEET 3 AB1 3 PHE B 163 ILE B 165 -1 N THR B 164 O SER B 173 LINK OE1 GLU A 11 CA CA A 301 1555 1555 2.34 LINK OE2 GLU A 11 CA CA A 302 1555 1555 2.35 LINK OD1 ASP A 67 CA CA A 301 1555 1555 2.20 LINK OE1 GLU A 69 CA CA A 301 1555 1555 2.34 LINK OE2 GLU A 69 CA CA A 302 1555 1555 2.26 LINK OD1 ASP A 100 CA CA A 302 1555 1555 2.31 LINK O GLN A 101 CA CA A 302 1555 1555 2.39 LINK OD1 ASN A 102 CA CA A 303 1555 1555 2.31 LINK OD2 ASP A 103 CA CA A 301 1555 1555 2.29 LINK OD1 ASP A 103 CA CA A 302 1555 1555 2.44 LINK O HIS A 104 CA CA A 303 1555 1555 2.26 LINK OD1 ASP A 134 CA CA A 303 1555 1555 2.59 LINK OD2 ASP A 134 CA CA A 303 1555 1555 2.43 LINK OD1 ASP A 136 CA CA A 302 1555 1555 2.35 LINK OD2 ASP A 136 CA CA A 303 1555 1555 2.31 LINK O ASN A 143 CA CA A 303 1555 1555 2.37 LINK OD2 ASP A 195 CA CA A 303 1555 1555 2.51 LINK OE1 GLU B 11 CA CA B 301 1555 1555 2.52 LINK OE2 GLU B 11 CA CA B 302 1555 1555 2.45 LINK OD1 ASP B 67 CA CA B 301 1555 1555 2.12 LINK OE1 GLU B 69 CA CA B 301 1555 1555 2.43 LINK OE1 GLU B 69 CA CA B 302 1555 1555 3.08 LINK OE2 GLU B 69 CA CA B 302 1555 1555 2.37 LINK OD1 ASP B 100 CA CA B 302 1555 1555 2.19 LINK O GLN B 101 CA CA B 302 1555 1555 2.35 LINK OD1 ASN B 102 CA CA B 303 1555 1555 2.28 LINK OD2 ASP B 103 CA CA B 301 1555 1555 2.20 LINK OD1 ASP B 103 CA CA B 302 1555 1555 2.26 LINK O HIS B 104 CA CA B 303 1555 1555 2.25 LINK OD1 ASP B 134 CA CA B 303 1555 1555 2.67 LINK OD2 ASP B 134 CA CA B 303 1555 1555 2.30 LINK OD1 ASP B 136 CA CA B 302 1555 1555 2.44 LINK OD2 ASP B 136 CA CA B 303 1555 1555 2.37 LINK O ASN B 143 CA CA B 303 1555 1555 2.47 LINK OD2 ASP B 195 CA CA B 303 1555 1555 2.33 CISPEP 1 GLY A 15 PRO A 16 0 1.41 CISPEP 2 PHE A 17 PRO A 18 0 -2.24 CISPEP 3 PRO A 46 PRO A 47 0 -4.08 CISPEP 4 GLU A 154 PRO A 155 0 -8.47 CISPEP 5 ASP A 157 PRO A 158 0 6.85 CISPEP 6 GLY B 15 PRO B 16 0 0.34 CISPEP 7 PHE B 17 PRO B 18 0 1.62 CISPEP 8 PRO B 46 PRO B 47 0 -6.11 CISPEP 9 GLU B 154 PRO B 155 0 5.37 CISPEP 10 ASP B 157 PRO B 158 0 1.38 SITE 1 AC1 4 GLU A 11 ASP A 67 GLU A 69 ASP A 103 SITE 1 AC2 6 GLU A 11 GLU A 69 ASP A 100 GLN A 101 SITE 2 AC2 6 ASP A 103 ASP A 136 SITE 1 AC3 6 ASN A 102 HIS A 104 ASP A 134 ASP A 136 SITE 2 AC3 6 ASN A 143 ASP A 195 SITE 1 AC4 4 GLU B 11 ASP B 67 GLU B 69 ASP B 103 SITE 1 AC5 6 GLU B 11 GLU B 69 ASP B 100 GLN B 101 SITE 2 AC5 6 ASP B 103 ASP B 136 SITE 1 AC6 6 ASN B 102 HIS B 104 ASP B 134 ASP B 136 SITE 2 AC6 6 ASN B 143 ASP B 195 CRYST1 181.460 181.460 40.730 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005511 0.003182 0.000000 0.00000 SCALE2 0.000000 0.006363 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024552 0.00000