HEADER OXIDOREDUCTASE 04-MAY-15 4ZN6 TITLE X-RAY CRYSTAL STRUCTURE OF 1-DEOXY-D-XYLULOSE 5-PHOSPHATE TITLE 2 REDUCTOISOMERASE (ISPC) FROM ACINETOBACTER BAUMANNII COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ACBAC.01136.A.B1; COMPND 5 SYNONYM: DXP REDUCTOISOMERASE,1-DEOXYXYLULOSE-5-PHOSPHATE COMPND 6 REDUCTOISOMERASE,2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE SYNTHASE; COMPND 7 EC: 1.1.1.267; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII (STRAIN AB307-0294); SOURCE 3 ORGANISM_TAXID: 557600; SOURCE 4 STRAIN: AB307-0294; SOURCE 5 GENE: DXR, ABBFA_001475; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: ACBAC.01136.A.B1 KEYWDS SSGCID, ISPC, 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE, KEYWDS 2 STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 27-SEP-23 4ZN6 1 REMARK REVDAT 3 25-DEC-19 4ZN6 1 REMARK REVDAT 2 20-SEP-17 4ZN6 1 SOURCE KEYWDS REMARK REVDAT 1 13-MAY-15 4ZN6 0 JRNL AUTH J.W.FAIRMAN,D.D.LORIMER,T.E.EDWARDS JRNL TITL X-RAY CRYSTAL STRUCTURE OF 1-DEOXY-D-XYLULOSE 5-PHOSPHATE JRNL TITL 2 REDUCTOISOMERASE (ISPC) FROM ACINETOBACTER BAUMANNII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 53510 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.750 REMARK 3 FREE R VALUE TEST SET COUNT : 2007 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.7635 - 4.9382 1.00 3791 150 0.1610 0.1876 REMARK 3 2 4.9382 - 3.9206 1.00 3719 143 0.1361 0.1508 REMARK 3 3 3.9206 - 3.4252 1.00 3686 147 0.1536 0.1985 REMARK 3 4 3.4252 - 3.1122 1.00 3706 144 0.1748 0.2628 REMARK 3 5 3.1122 - 2.8892 1.00 3669 144 0.1878 0.2234 REMARK 3 6 2.8892 - 2.7189 1.00 3662 140 0.1854 0.2238 REMARK 3 7 2.7189 - 2.5827 1.00 3659 144 0.1810 0.2312 REMARK 3 8 2.5827 - 2.4703 1.00 3698 145 0.1769 0.2557 REMARK 3 9 2.4703 - 2.3752 1.00 3654 141 0.1814 0.2109 REMARK 3 10 2.3752 - 2.2933 1.00 3657 143 0.1736 0.2061 REMARK 3 11 2.2933 - 2.2216 0.99 3659 147 0.1775 0.2242 REMARK 3 12 2.2216 - 2.1581 0.99 3639 137 0.1906 0.2534 REMARK 3 13 2.1581 - 2.1013 0.99 3657 142 0.2084 0.2672 REMARK 3 14 2.1013 - 2.0500 1.00 3647 140 0.2395 0.3041 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5948 REMARK 3 ANGLE : 0.804 8117 REMARK 3 CHIRALITY : 0.036 993 REMARK 3 PLANARITY : 0.004 1051 REMARK 3 DIHEDRAL : 12.989 2139 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3367 -31.8144 16.3270 REMARK 3 T TENSOR REMARK 3 T11: 0.1482 T22: 0.1169 REMARK 3 T33: 0.1691 T12: -0.0084 REMARK 3 T13: 0.0005 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.6349 L22: 1.8193 REMARK 3 L33: 2.5937 L12: -0.2200 REMARK 3 L13: -0.1224 L23: 1.2896 REMARK 3 S TENSOR REMARK 3 S11: -0.0523 S12: 0.0109 S13: -0.0998 REMARK 3 S21: 0.0574 S22: 0.0326 S23: -0.0681 REMARK 3 S31: 0.1818 S32: -0.0485 S33: 0.0223 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3222 -9.4806 13.2285 REMARK 3 T TENSOR REMARK 3 T11: 0.1271 T22: 0.1554 REMARK 3 T33: 0.2016 T12: 0.0094 REMARK 3 T13: -0.0081 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.6561 L22: 1.0266 REMARK 3 L33: 0.9584 L12: 0.5190 REMARK 3 L13: 0.6460 L23: 0.4698 REMARK 3 S TENSOR REMARK 3 S11: -0.0011 S12: 0.0890 S13: 0.0004 REMARK 3 S21: -0.0056 S22: -0.0069 S23: 0.0697 REMARK 3 S31: 0.0021 S32: -0.0045 S33: -0.0027 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 186 THROUGH 246 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.8002 -6.9371 11.1734 REMARK 3 T TENSOR REMARK 3 T11: 0.1476 T22: 0.1479 REMARK 3 T33: 0.1287 T12: 0.0119 REMARK 3 T13: -0.0122 T23: 0.0235 REMARK 3 L TENSOR REMARK 3 L11: 3.3385 L22: 0.5943 REMARK 3 L33: 1.0429 L12: 0.1912 REMARK 3 L13: -0.9428 L23: 0.0962 REMARK 3 S TENSOR REMARK 3 S11: 0.0156 S12: -0.0757 S13: -0.0886 REMARK 3 S21: -0.0993 S22: -0.0342 S23: -0.0820 REMARK 3 S31: 0.0784 S32: 0.1563 S33: -0.0053 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 247 THROUGH 406 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5745 -6.4493 10.3769 REMARK 3 T TENSOR REMARK 3 T11: 0.1125 T22: 0.1314 REMARK 3 T33: 0.1606 T12: -0.0051 REMARK 3 T13: -0.0202 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.6533 L22: 0.5443 REMARK 3 L33: 1.4982 L12: -0.1807 REMARK 3 L13: -0.6267 L23: 0.2685 REMARK 3 S TENSOR REMARK 3 S11: 0.0050 S12: 0.0808 S13: 0.0058 REMARK 3 S21: -0.0498 S22: 0.0290 S23: -0.0394 REMARK 3 S31: 0.0336 S32: -0.0094 S33: -0.0406 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 10 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1041 25.0858 45.3977 REMARK 3 T TENSOR REMARK 3 T11: 0.1919 T22: 0.1829 REMARK 3 T33: 0.1531 T12: 0.0465 REMARK 3 T13: 0.0029 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.6696 L22: 1.7859 REMARK 3 L33: 1.3192 L12: -0.0715 REMARK 3 L13: 0.0738 L23: -0.3828 REMARK 3 S TENSOR REMARK 3 S11: -0.0416 S12: -0.0629 S13: 0.0244 REMARK 3 S21: 0.2428 S22: 0.0553 S23: 0.0900 REMARK 3 S31: -0.2436 S32: -0.1793 S33: -0.0069 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 160 THROUGH 406 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9639 5.6481 48.7221 REMARK 3 T TENSOR REMARK 3 T11: 0.2017 T22: 0.1890 REMARK 3 T33: 0.1465 T12: 0.0146 REMARK 3 T13: -0.0121 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.3112 L22: 0.6055 REMARK 3 L33: 2.1738 L12: -0.0130 REMARK 3 L13: 0.3049 L23: -0.0497 REMARK 3 S TENSOR REMARK 3 S11: -0.0176 S12: -0.1164 S13: -0.0169 REMARK 3 S21: 0.1975 S22: 0.0271 S23: -0.0250 REMARK 3 S31: -0.1052 S32: 0.1837 S33: -0.0096 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZN6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000209570. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND[111] REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53531 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 3ANM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MCSG1 SCREEN C8: 0.2 M AMMONIUM REMARK 280 SULFATE, 0.1 M SODIUM CITRATE:HCL PH 5.60, 25% PEG 4000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.71500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS HAVE INDICATED THAT THE BIOLOGICAL UNIT IS UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 MET A 9 REMARK 465 HIS A 217 REMARK 465 PRO A 218 REMARK 465 ASN A 219 REMARK 465 TRP A 220 REMARK 465 SER A 221 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 MET B 9 REMARK 465 CYS B 215 REMARK 465 LYS B 216 REMARK 465 HIS B 217 REMARK 465 PRO B 218 REMARK 465 ASN B 219 REMARK 465 TRP B 220 REMARK 465 SER B 221 REMARK 465 MET B 222 REMARK 465 GLY B 223 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 92 CG CD OE1 OE2 REMARK 470 ARG A 149 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 178 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 MET A 222 CG SD CE REMARK 470 GLN A 321 CG CD OE1 NE2 REMARK 470 GLU A 352 CG CD OE1 OE2 REMARK 470 LYS A 374 CG CD CE NZ REMARK 470 GLU A 376 CG CD OE1 OE2 REMARK 470 GLU A 384 CG CD OE1 OE2 REMARK 470 LYS B 36 CG CD CE NZ REMARK 470 HIS B 45 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 61 CG CD CE NZ REMARK 470 ASP B 84 CG OD1 OD2 REMARK 470 GLU B 92 CG CD OE1 OE2 REMARK 470 ARG B 149 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 212 CG CD OE1 NE2 REMARK 470 GLN B 224 CG CD OE1 NE2 REMARK 470 LYS B 225 CG CD CE NZ REMARK 470 ILE B 226 CG1 CG2 CD1 REMARK 470 SER B 227 OG REMARK 470 GLN B 321 CG CD OE1 NE2 REMARK 470 ARG B 358 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 373 CG CD OE1 OE2 REMARK 470 LYS B 374 CG CD CE NZ REMARK 470 GLU B 376 CG CD OE1 OE2 REMARK 470 GLU B 381 CG CD OE1 OE2 REMARK 470 GLU B 384 CG CD OE1 OE2 REMARK 470 LYS B 391 CG CD CE NZ REMARK 470 GLN B 399 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 615 O HOH A 884 2.16 REMARK 500 OE1 GLU A 50 O HOH A 601 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 266 173.37 170.08 REMARK 500 SER B 266 174.01 171.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: ACBAC.01136.A RELATED DB: TARGETTRACK DBREF 4ZN6 A 9 406 UNP B7H1U5 DXR_ACIB3 1 398 DBREF 4ZN6 B 9 406 UNP B7H1U5 DXR_ACIB3 1 398 SEQADV 4ZN6 MET A 1 UNP B7H1U5 INITIATING METHIONINE SEQADV 4ZN6 ALA A 2 UNP B7H1U5 EXPRESSION TAG SEQADV 4ZN6 HIS A 3 UNP B7H1U5 EXPRESSION TAG SEQADV 4ZN6 HIS A 4 UNP B7H1U5 EXPRESSION TAG SEQADV 4ZN6 HIS A 5 UNP B7H1U5 EXPRESSION TAG SEQADV 4ZN6 HIS A 6 UNP B7H1U5 EXPRESSION TAG SEQADV 4ZN6 HIS A 7 UNP B7H1U5 EXPRESSION TAG SEQADV 4ZN6 HIS A 8 UNP B7H1U5 EXPRESSION TAG SEQADV 4ZN6 MET B 1 UNP B7H1U5 INITIATING METHIONINE SEQADV 4ZN6 ALA B 2 UNP B7H1U5 EXPRESSION TAG SEQADV 4ZN6 HIS B 3 UNP B7H1U5 EXPRESSION TAG SEQADV 4ZN6 HIS B 4 UNP B7H1U5 EXPRESSION TAG SEQADV 4ZN6 HIS B 5 UNP B7H1U5 EXPRESSION TAG SEQADV 4ZN6 HIS B 6 UNP B7H1U5 EXPRESSION TAG SEQADV 4ZN6 HIS B 7 UNP B7H1U5 EXPRESSION TAG SEQADV 4ZN6 HIS B 8 UNP B7H1U5 EXPRESSION TAG SEQRES 1 A 406 MET ALA HIS HIS HIS HIS HIS HIS MET THR GLN SER VAL SEQRES 2 A 406 CYS ILE LEU GLY VAL THR GLY SER ILE GLY ARG SER THR SEQRES 3 A 406 LEU LYS ILE LEU GLY GLN HIS PRO ASP LYS TYR SER VAL SEQRES 4 A 406 PHE ALA VAL SER ALA HIS SER ARG ILE SER GLU LEU VAL SEQRES 5 A 406 GLU ILE CYS LYS GLN PHE ARG PRO LYS VAL VAL VAL VAL SEQRES 6 A 406 PRO GLU GLN LYS ILE ALA GLU LEU LYS THR LEU PHE ALA SEQRES 7 A 406 GLN GLN ASN ILE SER ASP ILE ASP VAL LEU ALA GLY GLN SEQRES 8 A 406 GLU GLY LEU VAL ASP ILE ALA SER HIS THR ASP VAL ASP SEQRES 9 A 406 ILE VAL MET ALA ALA ILE VAL GLY ALA ALA GLY LEU LEU SEQRES 10 A 406 PRO THR LEU ALA ALA VAL LYS ALA GLY LYS ARG VAL LEU SEQRES 11 A 406 LEU ALA ASN LYS GLU ALA LEU VAL MET SER GLY GLU ILE SEQRES 12 A 406 MET MET GLN ALA ALA ARG ASP HIS GLN ALA LEU LEU LEU SEQRES 13 A 406 PRO VAL ASP SER GLU HIS ASN ALA ILE PHE GLN SER LEU SEQRES 14 A 406 PRO HIS ASN TYR LEU GLN ALA ASP ARG THR GLY GLN PRO SEQRES 15 A 406 GLN LEU GLY VAL SER LYS ILE LEU LEU THR ALA SER GLY SEQRES 16 A 406 GLY PRO PHE LEU ASN HIS SER LEU GLU GLN LEU VAL HIS SEQRES 17 A 406 VAL THR PRO GLN GLN ALA CYS LYS HIS PRO ASN TRP SER SEQRES 18 A 406 MET GLY GLN LYS ILE SER VAL ASP SER ALA THR LEU MET SEQRES 19 A 406 ASN LYS GLY LEU GLU LEU ILE GLU ALA CYS HIS LEU PHE SEQRES 20 A 406 SER ILE SER GLU HIS PHE VAL THR VAL VAL VAL HIS PRO SEQRES 21 A 406 GLN SER ILE ILE HIS SER MET VAL GLN TYR VAL ASP GLY SEQRES 22 A 406 SER THR LEU ALA GLN MET GLY ASN PRO ASP MET CYS THR SEQRES 23 A 406 PRO ILE ALA HIS ALA LEU ALA TRP PRO GLU ARG LEU GLN SEQRES 24 A 406 THR ASN VAL PRO ALA LEU ASP LEU PHE GLU TYR SER GLN SEQRES 25 A 406 LEU ASN PHE GLN ALA PRO ASP THR GLN LYS PHE PRO ALA SEQRES 26 A 406 LEU ASN LEU ALA ARG GLN ALA MET ARG ALA GLY GLY LEU SEQRES 27 A 406 ALA PRO THR ILE LEU ASN ALA ALA ASN GLU ILE ALA VAL SEQRES 28 A 406 GLU ALA PHE LEU MET GLU ARG ILE GLY PHE THR SER ILE SEQRES 29 A 406 PRO GLN VAL VAL GLU HIS THR LEU GLU LYS LEU GLU ASN SEQRES 30 A 406 ALA ALA ALA GLU SER ILE GLU CYS ILE LEU ASP LYS ASP SEQRES 31 A 406 LYS VAL ALA ARG SER VAL ALA GLN GLN TYR ILE SER SER SEQRES 32 A 406 ILE GLY GLY SEQRES 1 B 406 MET ALA HIS HIS HIS HIS HIS HIS MET THR GLN SER VAL SEQRES 2 B 406 CYS ILE LEU GLY VAL THR GLY SER ILE GLY ARG SER THR SEQRES 3 B 406 LEU LYS ILE LEU GLY GLN HIS PRO ASP LYS TYR SER VAL SEQRES 4 B 406 PHE ALA VAL SER ALA HIS SER ARG ILE SER GLU LEU VAL SEQRES 5 B 406 GLU ILE CYS LYS GLN PHE ARG PRO LYS VAL VAL VAL VAL SEQRES 6 B 406 PRO GLU GLN LYS ILE ALA GLU LEU LYS THR LEU PHE ALA SEQRES 7 B 406 GLN GLN ASN ILE SER ASP ILE ASP VAL LEU ALA GLY GLN SEQRES 8 B 406 GLU GLY LEU VAL ASP ILE ALA SER HIS THR ASP VAL ASP SEQRES 9 B 406 ILE VAL MET ALA ALA ILE VAL GLY ALA ALA GLY LEU LEU SEQRES 10 B 406 PRO THR LEU ALA ALA VAL LYS ALA GLY LYS ARG VAL LEU SEQRES 11 B 406 LEU ALA ASN LYS GLU ALA LEU VAL MET SER GLY GLU ILE SEQRES 12 B 406 MET MET GLN ALA ALA ARG ASP HIS GLN ALA LEU LEU LEU SEQRES 13 B 406 PRO VAL ASP SER GLU HIS ASN ALA ILE PHE GLN SER LEU SEQRES 14 B 406 PRO HIS ASN TYR LEU GLN ALA ASP ARG THR GLY GLN PRO SEQRES 15 B 406 GLN LEU GLY VAL SER LYS ILE LEU LEU THR ALA SER GLY SEQRES 16 B 406 GLY PRO PHE LEU ASN HIS SER LEU GLU GLN LEU VAL HIS SEQRES 17 B 406 VAL THR PRO GLN GLN ALA CYS LYS HIS PRO ASN TRP SER SEQRES 18 B 406 MET GLY GLN LYS ILE SER VAL ASP SER ALA THR LEU MET SEQRES 19 B 406 ASN LYS GLY LEU GLU LEU ILE GLU ALA CYS HIS LEU PHE SEQRES 20 B 406 SER ILE SER GLU HIS PHE VAL THR VAL VAL VAL HIS PRO SEQRES 21 B 406 GLN SER ILE ILE HIS SER MET VAL GLN TYR VAL ASP GLY SEQRES 22 B 406 SER THR LEU ALA GLN MET GLY ASN PRO ASP MET CYS THR SEQRES 23 B 406 PRO ILE ALA HIS ALA LEU ALA TRP PRO GLU ARG LEU GLN SEQRES 24 B 406 THR ASN VAL PRO ALA LEU ASP LEU PHE GLU TYR SER GLN SEQRES 25 B 406 LEU ASN PHE GLN ALA PRO ASP THR GLN LYS PHE PRO ALA SEQRES 26 B 406 LEU ASN LEU ALA ARG GLN ALA MET ARG ALA GLY GLY LEU SEQRES 27 B 406 ALA PRO THR ILE LEU ASN ALA ALA ASN GLU ILE ALA VAL SEQRES 28 B 406 GLU ALA PHE LEU MET GLU ARG ILE GLY PHE THR SER ILE SEQRES 29 B 406 PRO GLN VAL VAL GLU HIS THR LEU GLU LYS LEU GLU ASN SEQRES 30 B 406 ALA ALA ALA GLU SER ILE GLU CYS ILE LEU ASP LYS ASP SEQRES 31 B 406 LYS VAL ALA ARG SER VAL ALA GLN GLN TYR ILE SER SER SEQRES 32 B 406 ILE GLY GLY HET SO4 A 501 5 HET SO4 A 502 5 HET EDO A 503 4 HET SO4 B 501 5 HET EDO B 502 4 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SO4 3(O4 S 2-) FORMUL 5 EDO 2(C2 H6 O2) FORMUL 8 HOH *617(H2 O) HELIX 1 AA1 GLY A 20 HIS A 33 1 14 HELIX 2 AA2 ARG A 47 ARG A 59 1 13 HELIX 3 AA3 PRO A 66 GLN A 68 5 3 HELIX 4 AA4 LYS A 69 GLN A 80 1 12 HELIX 5 AA5 GLY A 90 SER A 99 1 10 HELIX 6 AA6 GLY A 112 ALA A 114 5 3 HELIX 7 AA7 GLY A 115 ALA A 125 1 11 HELIX 8 AA8 LYS A 134 MET A 139 1 6 HELIX 9 AA9 SER A 140 GLN A 152 1 13 HELIX 10 AB1 ASP A 159 LEU A 169 1 11 HELIX 11 AB2 ASN A 172 ALA A 176 5 5 HELIX 12 AB3 SER A 202 HIS A 208 1 7 HELIX 13 AB4 THR A 210 CYS A 215 1 6 HELIX 14 AB5 GLY A 223 LEU A 233 1 11 HELIX 15 AB6 LEU A 233 PHE A 247 1 15 HELIX 16 AB7 SER A 250 HIS A 252 5 3 HELIX 17 AB8 MET A 284 TRP A 294 1 11 HELIX 18 AB9 PRO A 324 GLY A 336 1 13 HELIX 19 AC1 LEU A 338 MET A 356 1 19 HELIX 20 AC2 THR A 362 LEU A 375 1 14 HELIX 21 AC3 SER A 382 ILE A 404 1 23 HELIX 22 AC4 GLY B 20 HIS B 33 1 14 HELIX 23 AC5 ARG B 47 ARG B 59 1 13 HELIX 24 AC6 PRO B 66 GLN B 68 5 3 HELIX 25 AC7 LYS B 69 GLN B 80 1 12 HELIX 26 AC8 GLY B 90 SER B 99 1 10 HELIX 27 AC9 GLY B 112 ALA B 114 5 3 HELIX 28 AD1 GLY B 115 ALA B 125 1 11 HELIX 29 AD2 LYS B 134 MET B 139 1 6 HELIX 30 AD3 SER B 140 HIS B 151 1 12 HELIX 31 AD4 ASP B 159 LEU B 169 1 11 HELIX 32 AD5 ASN B 172 ALA B 176 5 5 HELIX 33 AD6 SER B 202 HIS B 208 1 7 HELIX 34 AD7 LYS B 225 THR B 232 1 8 HELIX 35 AD8 LEU B 233 PHE B 247 1 15 HELIX 36 AD9 SER B 250 HIS B 252 5 3 HELIX 37 AE1 MET B 284 TRP B 294 1 11 HELIX 38 AE2 PRO B 324 GLY B 336 1 13 HELIX 39 AE3 LEU B 338 MET B 356 1 19 HELIX 40 AE4 GLY B 360 THR B 362 5 3 HELIX 41 AE5 SER B 363 LEU B 375 1 13 HELIX 42 AE6 SER B 382 ILE B 404 1 23 SHEET 1 AA1 7 ASP A 86 ALA A 89 0 SHEET 2 AA1 7 VAL A 62 VAL A 65 1 N VAL A 63 O ASP A 86 SHEET 3 AA1 7 TYR A 37 SER A 43 1 N VAL A 42 O VAL A 64 SHEET 4 AA1 7 GLN A 11 LEU A 16 1 N VAL A 13 O SER A 38 SHEET 5 AA1 7 ILE A 105 ALA A 108 1 O ILE A 105 N CYS A 14 SHEET 6 AA1 7 ARG A 128 LEU A 131 1 O LEU A 130 N VAL A 106 SHEET 7 AA1 7 LEU A 154 PRO A 157 1 O LEU A 154 N VAL A 129 SHEET 1 AA2 8 VAL A 254 VAL A 258 0 SHEET 2 AA2 8 VAL A 186 ALA A 193 1 N ILE A 189 O THR A 255 SHEET 3 AA2 8 ILE A 264 TYR A 270 -1 O GLN A 269 N LYS A 188 SHEET 4 AA2 8 THR A 275 MET A 279 -1 O LEU A 276 N VAL A 268 SHEET 5 AA2 8 THR B 275 MET B 279 -1 O THR B 275 N MET A 279 SHEET 6 AA2 8 ILE B 264 TYR B 270 -1 N VAL B 268 O LEU B 276 SHEET 7 AA2 8 VAL B 186 ALA B 193 -1 N LYS B 188 O GLN B 269 SHEET 8 AA2 8 VAL B 254 VAL B 258 1 O THR B 255 N ILE B 189 SHEET 1 AA3 2 GLN A 312 ASN A 314 0 SHEET 2 AA3 2 GLN B 312 ASN B 314 -1 O LEU B 313 N LEU A 313 SHEET 1 AA4 7 ASP B 86 ALA B 89 0 SHEET 2 AA4 7 VAL B 62 VAL B 65 1 N VAL B 63 O ASP B 86 SHEET 3 AA4 7 TYR B 37 SER B 43 1 N VAL B 42 O VAL B 64 SHEET 4 AA4 7 GLN B 11 LEU B 16 1 N VAL B 13 O SER B 38 SHEET 5 AA4 7 ILE B 105 ALA B 108 1 O ILE B 105 N CYS B 14 SHEET 6 AA4 7 ARG B 128 LEU B 131 1 O LEU B 130 N VAL B 106 SHEET 7 AA4 7 LEU B 154 PRO B 157 1 O LEU B 156 N LEU B 131 CISPEP 1 TRP A 294 PRO A 295 0 7.77 CISPEP 2 TRP B 294 PRO B 295 0 5.35 SITE 1 AC1 10 ALA A 193 SER A 194 SER A 230 ASN A 235 SITE 2 AC1 10 LYS A 236 HOH A 628 HOH A 632 HOH A 668 SITE 3 AC1 10 HOH A 748 HOH A 848 SITE 1 AC2 4 LYS A 124 HIS A 151 HIS A 208 HOH A 667 SITE 1 AC3 8 LEU A 131 ASN A 133 PRO A 157 VAL A 158 SITE 2 AC3 8 ASP A 159 HIS A 162 GLU A 242 HOH A 663 SITE 1 AC4 9 ALA B 193 SER B 194 SER B 230 ASN B 235 SITE 2 AC4 9 LYS B 236 HOH B 624 HOH B 652 HOH B 700 SITE 3 AC4 9 HOH B 752 SITE 1 AC5 4 LEU A 190 LEU B 305 ASP B 306 LEU B 307 CRYST1 54.270 65.430 121.680 90.00 92.09 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018426 0.000000 0.000672 0.00000 SCALE2 0.000000 0.015284 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008224 0.00000 CONECT 5825 5826 5827 5828 5829 CONECT 5826 5825 CONECT 5827 5825 CONECT 5828 5825 CONECT 5829 5825 CONECT 5830 5831 5832 5833 5834 CONECT 5831 5830 CONECT 5832 5830 CONECT 5833 5830 CONECT 5834 5830 CONECT 5835 5836 5837 CONECT 5836 5835 CONECT 5837 5835 5838 CONECT 5838 5837 CONECT 5839 5840 5841 5842 5843 CONECT 5840 5839 CONECT 5841 5839 CONECT 5842 5839 CONECT 5843 5839 CONECT 5844 5845 5846 CONECT 5845 5844 CONECT 5846 5844 5847 CONECT 5847 5846 MASTER 417 0 5 42 24 0 10 6 6420 2 23 64 END