HEADER CELL ADHESION 08-MAY-15 4ZPL TITLE CRYSTAL STRUCTURE OF PROTOCADHERIN BETA 1 EC1-3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN PCDHB1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 29-342; COMPND 5 SYNONYM: PROTOCADHERIN BETA 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PCDHB1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293F KEYWDS CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR K.M.GOODMAN,F.BAHNA,L.SHAPIRO REVDAT 4 27-SEP-23 4ZPL 1 HETSYN LINK REVDAT 3 29-JUL-20 4ZPL 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 04-NOV-15 4ZPL 1 JRNL REVDAT 1 28-OCT-15 4ZPL 0 JRNL AUTH R.RUBINSTEIN,C.A.THU,K.M.GOODMAN,H.N.WOLCOTT,F.BAHNA, JRNL AUTH 2 S.MANNEPALLI,G.AHLSEN,M.CHEVEE,A.HALIM,H.CLAUSEN,T.MANIATIS, JRNL AUTH 3 L.SHAPIRO,B.HONIG JRNL TITL MOLECULAR LOGIC OF NEURONAL SELF-RECOGNITION THROUGH JRNL TITL 2 PROTOCADHERIN DOMAIN INTERACTIONS. JRNL REF CELL V. 163 629 2015 JRNL REFN ISSN 1097-4172 JRNL PMID 26478182 JRNL DOI 10.1016/J.CELL.2015.09.026 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 9006 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.234 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.530 REMARK 3 FREE R VALUE TEST SET COUNT : 498 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.6994 - 5.2359 0.95 2176 117 0.1904 0.2251 REMARK 3 2 5.2359 - 4.1571 0.98 2137 125 0.1996 0.2511 REMARK 3 3 4.1571 - 3.6320 0.98 2120 131 0.2770 0.3191 REMARK 3 4 3.6320 - 3.3000 0.97 2075 125 0.3271 0.3893 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.490 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2620 REMARK 3 ANGLE : 0.742 3590 REMARK 3 CHIRALITY : 0.031 454 REMARK 3 PLANARITY : 0.003 456 REMARK 3 DIHEDRAL : 10.929 977 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 1:98)) REMARK 3 ORIGIN FOR THE GROUP (A): -58.1756 -16.6089 -12.2366 REMARK 3 T TENSOR REMARK 3 T11: 0.0533 T22: 0.8929 REMARK 3 T33: 0.8088 T12: -0.0739 REMARK 3 T13: 0.0054 T23: 0.2312 REMARK 3 L TENSOR REMARK 3 L11: 3.3214 L22: 0.8209 REMARK 3 L33: 0.1143 L12: 0.5318 REMARK 3 L13: -0.5285 L23: -0.0243 REMARK 3 S TENSOR REMARK 3 S11: 0.0629 S12: 0.8623 S13: 0.2912 REMARK 3 S21: -0.2752 S22: 0.2261 S23: -0.0489 REMARK 3 S31: 0.0083 S32: 0.0383 S33: -0.0787 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 99:206)) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7649 -5.5387 -23.0954 REMARK 3 T TENSOR REMARK 3 T11: 0.0128 T22: 1.0710 REMARK 3 T33: 1.2629 T12: -0.0500 REMARK 3 T13: 0.2310 T23: 0.6389 REMARK 3 L TENSOR REMARK 3 L11: 0.7617 L22: 0.2291 REMARK 3 L33: 0.2668 L12: 0.2596 REMARK 3 L13: -0.1076 L23: -0.1411 REMARK 3 S TENSOR REMARK 3 S11: -0.0234 S12: -0.0563 S13: 0.0370 REMARK 3 S21: -0.0298 S22: -0.3264 S23: -0.1980 REMARK 3 S31: 0.1409 S32: 0.1971 S33: -0.0207 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 207:316)) REMARK 3 ORIGIN FOR THE GROUP (A): 31.7516 -11.4210 -41.2483 REMARK 3 T TENSOR REMARK 3 T11: 0.2230 T22: 0.7247 REMARK 3 T33: 1.1551 T12: 0.1619 REMARK 3 T13: 0.2254 T23: 0.3489 REMARK 3 L TENSOR REMARK 3 L11: 4.3855 L22: 0.7652 REMARK 3 L33: 2.2874 L12: -0.9274 REMARK 3 L13: -1.3442 L23: 1.1327 REMARK 3 S TENSOR REMARK 3 S11: -0.1349 S12: 0.3296 S13: -0.9284 REMARK 3 S21: 0.1246 S22: -0.0600 S23: 0.1888 REMARK 3 S31: 0.2490 S32: -0.1597 S33: 0.1548 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZPL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000209667. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9021 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 41.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4ZPO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% (W/V) PEG1500, 20% (V/V) GLYCEROL, REMARK 280 3% (W/V) GLUCOSE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.49500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.67500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.26000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.67500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.49500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.26000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.49500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.26000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 74.67500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.26000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.49500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.67500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 317 REMARK 465 HIS A 318 REMARK 465 HIS A 319 REMARK 465 HIS A 320 REMARK 465 HIS A 321 REMARK 465 HIS A 322 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 LYS A 30 CD CE NZ REMARK 470 ARG A 44 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 216 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 243 CG CD OE1 OE2 REMARK 470 LYS A 247 CD CE NZ REMARK 470 GLU A 255 CG CD OE1 OE2 REMARK 470 GLN A 269 CG CD OE1 NE2 REMARK 470 ASP A 280 CG OD1 OD2 REMARK 470 ASP A 314 CG OD1 OD2 REMARK 470 HIS A 315 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 82 -166.96 -119.58 REMARK 500 GLU A 84 72.21 52.16 REMARK 500 GLN A 140 -34.40 -139.93 REMARK 500 ALA A 176 -79.93 -70.68 REMARK 500 SER A 215 -71.16 -62.67 REMARK 500 VAL A 233 -70.07 -71.44 REMARK 500 ASP A 242 -169.89 -79.70 REMARK 500 ASN A 246 32.88 -85.76 REMARK 500 LYS A 247 -36.74 -137.18 REMARK 500 GLN A 269 -66.44 -99.27 REMARK 500 GLU A 272 97.33 -67.87 REMARK 500 ASP A 311 131.17 76.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 413 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 9 OE1 REMARK 620 2 GLU A 9 OE2 46.6 REMARK 620 3 GLU A 65 OE1 111.2 102.6 REMARK 620 4 GLU A 65 OE2 95.0 59.9 49.5 REMARK 620 5 ASP A 97 OD1 76.3 121.2 83.4 125.6 REMARK 620 6 ILE A 98 O 96.4 124.4 132.1 165.8 65.6 REMARK 620 7 ASP A 100 OD1 99.8 77.7 137.2 100.6 133.7 69.1 REMARK 620 8 ASP A 133 OD1 172.3 141.1 68.9 90.7 96.2 78.7 84.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 414 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 9 OE2 REMARK 620 2 GLU A 10 OE2 71.0 REMARK 620 3 ASP A 63 OD1 96.2 66.0 REMARK 620 4 GLU A 65 OE2 70.0 131.8 91.3 REMARK 620 5 ASP A 100 OD2 72.0 80.3 146.3 112.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 415 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 99 OD1 REMARK 620 2 ASN A 101 O 81.8 REMARK 620 3 ASP A 131 OD1 139.7 64.0 REMARK 620 4 ASP A 131 OD2 173.7 101.4 46.0 REMARK 620 5 ASP A 133 OD2 76.9 70.6 72.2 109.3 REMARK 620 6 ASN A 137 O 109.5 144.0 89.3 71.1 78.7 REMARK 620 7 ASP A 188 OD2 73.3 130.5 145.6 100.6 138.9 85.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 416 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 116 OE1 REMARK 620 2 GLU A 175 OE2 105.1 REMARK 620 3 VAL A 207 O 100.4 152.3 REMARK 620 4 ASP A 209 OD1 97.2 97.8 68.1 REMARK 620 5 ASP A 242 OD1 170.4 68.4 84.9 77.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 417 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 116 OE2 REMARK 620 2 ASP A 173 OD1 77.5 REMARK 620 3 GLU A 175 OE1 66.6 72.0 REMARK 620 4 ASP A 209 OD2 70.9 136.8 118.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 418 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 208 OD1 REMARK 620 2 HIS A 210 O 99.5 REMARK 620 3 ASP A 240 OD1 155.4 75.4 REMARK 620 4 ASP A 240 OD2 151.4 105.7 48.4 REMARK 620 5 ASP A 242 OD2 81.9 85.0 73.7 113.1 REMARK 620 6 ASP A 295 OD2 68.4 138.8 130.8 83.7 128.9 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ZPM RELATED DB: PDB REMARK 900 RELATED ID: 4ZPN RELATED DB: PDB REMARK 900 RELATED ID: 4ZPO RELATED DB: PDB REMARK 900 RELATED ID: 4ZPP RELATED DB: PDB REMARK 900 RELATED ID: 4ZPQ RELATED DB: PDB REMARK 900 RELATED ID: 4ZPS RELATED DB: PDB DBREF 4ZPL A 1 314 UNP Q91Y08 Q91Y08_MOUSE 29 342 SEQADV 4ZPL HIS A 315 UNP Q91Y08 EXPRESSION TAG SEQADV 4ZPL HIS A 316 UNP Q91Y08 EXPRESSION TAG SEQADV 4ZPL HIS A 317 UNP Q91Y08 EXPRESSION TAG SEQADV 4ZPL HIS A 318 UNP Q91Y08 EXPRESSION TAG SEQADV 4ZPL HIS A 319 UNP Q91Y08 EXPRESSION TAG SEQADV 4ZPL HIS A 320 UNP Q91Y08 EXPRESSION TAG SEQADV 4ZPL HIS A 321 UNP Q91Y08 EXPRESSION TAG SEQADV 4ZPL HIS A 322 UNP Q91Y08 EXPRESSION TAG SEQRES 1 A 322 ALA THR ILE ARG TYR SER VAL ALA GLU GLU MET GLU SER SEQRES 2 A 322 GLY SER PHE VAL ALA ASN VAL ALA LYS ASP LEU GLY LEU SEQRES 3 A 322 GLU VAL GLY LYS LEU ALA GLU ARG GLY ALA ARG LEU VAL SEQRES 4 A 322 ALA GLU GLY ASN ARG LEU HIS PHE ARG LEU HIS ARG LYS SEQRES 5 A 322 THR GLY ASP LEU PHE VAL LYS GLU LYS LEU ASP ARG GLU SEQRES 6 A 322 ALA LEU CYS GLY LYS SER ASP PRO CYS VAL LEU HIS PHE SEQRES 7 A 322 GLU ILE ILE LEU ALA GLU PRO LEU GLN SER PHE ARG VAL SEQRES 8 A 322 GLU VAL ARG VAL PHE ASP ILE ASN ASP ASN ALA PRO VAL SEQRES 9 A 322 PHE LEU ASN LYS GLU PRO LEU LEU LYS ILE PRO GLU SER SEQRES 10 A 322 THR PRO LEU GLY SER ARG PHE PRO LEU GLN SER ALA GLN SEQRES 11 A 322 ASP LEU ASP VAL GLY LEU ASN GLY LEU GLN ASN TYR THR SEQRES 12 A 322 LEU SER ALA ASN THR TYR PHE HIS LEU HIS THR ARG PHE SEQRES 13 A 322 ARG SER HIS GLY PRO LYS TYR ALA GLU LEU VAL LEU ASP SEQRES 14 A 322 ASN PRO LEU ASP ARG GLU ALA GLN PRO GLU VAL ASN LEU SEQRES 15 A 322 THR ILE THR ALA VAL ASP GLY GLY SER PRO PRO LYS SER SEQRES 16 A 322 GLY THR ALA ASN ILE ARG VAL VAL VAL LEU ASP VAL ASN SEQRES 17 A 322 ASP HIS VAL PRO GLN PHE SER ARG LEU VAL TYR ARG ALA SEQRES 18 A 322 GLN VAL PRO GLU ASN SER ASP ASN GLY SER LEU VAL VAL SEQRES 19 A 322 VAL VAL THR ALA THR ASP LEU ASP GLU GLY THR ASN LYS SEQRES 20 A 322 GLN ILE THR TYR SER LEU ALA GLU ASN PRO GLU ALA VAL SEQRES 21 A 322 LEU ARG THR PHE LEU VAL ASP PRO GLN THR GLY GLU VAL SEQRES 22 A 322 ARG LEU ARG GLY PRO LEU ASP PHE GLU MET ILE GLU THR SEQRES 23 A 322 TYR ASP ILE ASP ILE GLN ALA THR ASP GLY GLY GLY LEU SEQRES 24 A 322 SER ALA HIS SER LYS VAL LEU VAL GLU VAL VAL ASP VAL SEQRES 25 A 322 ASN ASP HIS HIS HIS HIS HIS HIS HIS HIS HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET FUC B 4 10 HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET FUC C 4 10 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET FUC D 4 10 HET CA A 413 1 HET CA A 414 1 HET CA A 415 1 HET CA A 416 1 HET CA A 417 1 HET CA A 418 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 2 NAG 6(C8 H15 N O6) FORMUL 2 BMA 3(C6 H12 O6) FORMUL 2 FUC 3(C6 H12 O5) FORMUL 5 CA 6(CA 2+) FORMUL 11 HOH *4(H2 O) HELIX 1 AA1 ALA A 21 GLY A 25 5 5 HELIX 2 AA2 GLU A 27 ARG A 34 1 8 HELIX 3 AA3 ASP A 63 CYS A 68 1 6 HELIX 4 AA4 VAL A 134 ASN A 137 5 4 HELIX 5 AA5 PRO A 257 THR A 263 1 7 SHEET 1 AA1 4 ILE A 3 ALA A 8 0 SHEET 2 AA1 4 SER A 88 PHE A 96 1 O ARG A 94 N VAL A 7 SHEET 3 AA1 4 VAL A 75 ILE A 81 -1 N LEU A 76 O VAL A 93 SHEET 4 AA1 4 ARG A 37 VAL A 39 -1 N VAL A 39 O GLU A 79 SHEET 1 AA2 3 PHE A 16 ASN A 19 0 SHEET 2 AA2 3 ASP A 55 VAL A 58 -1 O LEU A 56 N VAL A 17 SHEET 3 AA2 3 PHE A 47 HIS A 50 -1 N HIS A 50 O ASP A 55 SHEET 1 AA3 4 LEU A 111 PRO A 115 0 SHEET 2 AA3 4 SER A 195 LEU A 205 1 O LEU A 205 N ILE A 114 SHEET 3 AA3 4 GLU A 179 ASP A 188 -1 N LEU A 182 O ILE A 200 SHEET 4 AA3 4 LEU A 139 LEU A 144 -1 N ASN A 141 O VAL A 187 SHEET 1 AA4 3 ARG A 123 LEU A 126 0 SHEET 2 AA4 3 PRO A 161 LEU A 168 -1 O LEU A 166 N PHE A 124 SHEET 3 AA4 3 PHE A 150 PHE A 156 -1 N HIS A 153 O GLU A 165 SHEET 1 AA5 2 GLN A 213 PHE A 214 0 SHEET 2 AA5 2 ALA A 238 THR A 239 -1 O THR A 239 N GLN A 213 SHEET 1 AA6 4 VAL A 218 PRO A 224 0 SHEET 2 AA6 4 SER A 300 VAL A 310 1 O GLU A 308 N ALA A 221 SHEET 3 AA6 4 THR A 286 THR A 294 -1 N ALA A 293 O ALA A 301 SHEET 4 AA6 4 THR A 250 LEU A 253 -1 N SER A 252 O GLN A 292 SHEET 1 AA7 3 LEU A 232 VAL A 235 0 SHEET 2 AA7 3 GLU A 272 LEU A 275 -1 O VAL A 273 N VAL A 234 SHEET 3 AA7 3 PHE A 264 VAL A 266 -1 N LEU A 265 O ARG A 274 SSBOND 1 CYS A 68 CYS A 74 1555 1555 2.03 LINK ND2 ASN A 141 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 181 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN A 229 C1 NAG D 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O6 NAG B 1 C1 FUC B 4 1555 1555 1.44 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O6 NAG C 1 C1 FUC C 4 1555 1555 1.45 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O6 NAG D 1 C1 FUC D 4 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.44 LINK OE1 GLU A 9 CA CA A 413 1555 1555 2.53 LINK OE2 GLU A 9 CA CA A 413 1555 1555 2.94 LINK OE2 GLU A 9 CA CA A 414 1555 1555 2.45 LINK OE2 GLU A 10 CA CA A 414 1555 1555 3.04 LINK OD1 ASP A 63 CA CA A 414 1555 1555 2.40 LINK OE1 GLU A 65 CA CA A 413 1555 1555 2.49 LINK OE2 GLU A 65 CA CA A 413 1555 1555 2.73 LINK OE2 GLU A 65 CA CA A 414 1555 1555 2.49 LINK OD1 ASP A 97 CA CA A 413 1555 1555 2.52 LINK O ILE A 98 CA CA A 413 1555 1555 2.82 LINK OD1 ASN A 99 CA CA A 415 1555 1555 2.54 LINK OD1 ASP A 100 CA CA A 413 1555 1555 2.49 LINK OD2 ASP A 100 CA CA A 414 1555 1555 2.41 LINK O ASN A 101 CA CA A 415 1555 1555 2.42 LINK OE1 GLU A 116 CA CA A 416 1555 1555 2.44 LINK OE2 GLU A 116 CA CA A 417 1555 1555 2.53 LINK OD1 ASP A 131 CA CA A 415 1555 1555 3.00 LINK OD2 ASP A 131 CA CA A 415 1555 1555 2.48 LINK OD1 ASP A 133 CA CA A 413 1555 1555 3.08 LINK OD2 ASP A 133 CA CA A 415 1555 1555 2.66 LINK O ASN A 137 CA CA A 415 1555 1555 2.39 LINK OD1 ASP A 173 CA CA A 417 1555 1555 2.44 LINK OE2 GLU A 175 CA CA A 416 1555 1555 2.48 LINK OE1 GLU A 175 CA CA A 417 1555 1555 2.53 LINK OD2 ASP A 188 CA CA A 415 1555 1555 2.86 LINK O VAL A 207 CA CA A 416 1555 1555 2.48 LINK OD1 ASN A 208 CA CA A 418 1555 1555 2.63 LINK OD1 ASP A 209 CA CA A 416 1555 1555 2.48 LINK OD2 ASP A 209 CA CA A 417 1555 1555 2.39 LINK O HIS A 210 CA CA A 418 1555 1555 2.38 LINK OD1 ASP A 240 CA CA A 418 1555 1555 2.83 LINK OD2 ASP A 240 CA CA A 418 1555 1555 2.45 LINK OD1 ASP A 242 CA CA A 416 1555 1555 3.00 LINK OD2 ASP A 242 CA CA A 418 1555 1555 2.83 LINK OD2 ASP A 295 CA CA A 418 1555 1555 2.44 CISPEP 1 GLU A 84 PRO A 85 0 -2.36 CISPEP 2 SER A 191 PRO A 192 0 -0.20 CRYST1 74.990 106.520 149.350 90.00 90.00 90.00 I 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013335 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009388 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006696 0.00000