HEADER HYDROLASE 08-MAY-15 4ZPX TITLE CRYSTAL STRUCTURE OF LON ATPASE DOMAIN FROM THERMOCOCCUS ONNURINEUS TITLE 2 NA1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT PROTEASE LON; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-413; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS ONNURINEUS (STRAIN NA1); SOURCE 3 ORGANISM_TAXID: 523850; SOURCE 4 STRAIN: NA1; SOURCE 5 GENE: TON_0529; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AAA+ PROTEINS, PS-1 INSERT, H2 INSERT, INS1, LON PROTEASE, KEYWDS 2 THERMOCOCCUS ONNURINEUS NA1, ATP-INDEPENDENT PROTEOLYTIC ACTIVITY, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.J.AN,M.I.KIM,J.H.NA,S.S.CHA REVDAT 3 23-OCT-24 4ZPX 1 REMARK REVDAT 2 19-FEB-20 4ZPX 1 JRNL REMARK REVDAT 1 11-MAY-16 4ZPX 0 JRNL AUTH M.I.KIM,Y.J.AN,J.H.NA,S.S.CHA JRNL TITL STRUCTURAL DISPARITY CLASSIFIES AAA+ MODULES OF LON JRNL TITL 2 PROTEASES INTO TWO DISTINCT CLADES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 40140 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2130 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.04 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.09 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2515 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 133 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4958 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 243 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.02000 REMARK 3 B22 (A**2) : -0.52000 REMARK 3 B33 (A**2) : -0.35000 REMARK 3 B12 (A**2) : 1.91000 REMARK 3 B13 (A**2) : -0.52000 REMARK 3 B23 (A**2) : -0.44000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.200 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.182 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.799 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5038 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5076 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6815 ; 1.856 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11647 ; 0.923 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 651 ; 6.399 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 203 ;31.898 ;23.695 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 882 ;17.917 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;21.109 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 805 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5649 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1049 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2625 ; 2.897 ; 3.159 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2624 ; 2.897 ; 3.157 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3269 ; 4.253 ; 4.707 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3270 ; 4.253 ; 4.709 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2413 ; 3.766 ; 3.582 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2413 ; 3.764 ; 3.582 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3547 ; 5.749 ; 5.201 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 21269 ; 8.134 ;29.599 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 21178 ; 8.123 ;29.582 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4ZPX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000209628. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42270 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.0300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM CHLORIDE, 0.01M REMARK 280 MAGNESIUM ACETATE, 0.05M TRI-SODIUM CITRATE DIHYDRATE PH 4.5, 12% REMARK 280 PEG 4000, 5% N-DODECYL-BETA-D-MALTOSIDE, MICROBATCH, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ASP A 3 REMARK 465 ASN A 4 REMARK 465 GLU A 5 REMARK 465 LYS A 6 REMARK 465 ILE A 7 REMARK 465 ASN A 8 REMARK 465 ARG A 9 REMARK 465 GLU A 10 REMARK 465 ALA A 11 REMARK 465 LEU A 12 REMARK 465 ALA A 13 REMARK 465 PRO A 14 REMARK 465 ARG A 15 REMARK 465 GLU A 16 REMARK 465 TYR A 17 REMARK 465 GLY A 18 REMARK 465 GLU A 19 REMARK 465 GLU A 123 REMARK 465 LYS A 124 REMARK 465 ALA A 125 REMARK 465 LYS A 126 REMARK 465 SER A 127 REMARK 465 GLN A 128 REMARK 465 GLU A 129 REMARK 465 SER A 130 REMARK 465 VAL A 131 REMARK 465 LYS A 132 REMARK 465 SER A 133 REMARK 465 TYR A 134 REMARK 465 ILE A 135 REMARK 465 LEU A 136 REMARK 465 LEU A 137 REMARK 465 PHE A 138 REMARK 465 VAL A 139 REMARK 465 MET A 140 REMARK 465 PHE A 141 REMARK 465 THR A 142 REMARK 465 VAL A 143 REMARK 465 MET A 144 REMARK 465 LEU A 145 REMARK 465 ALA A 146 REMARK 465 LEU A 147 REMARK 465 PHE A 148 REMARK 465 ILE A 149 REMARK 465 GLU A 150 REMARK 465 PHE A 151 REMARK 465 SER A 152 REMARK 465 ALA A 153 REMARK 465 THR A 154 REMARK 465 THR A 155 REMARK 465 LEU A 156 REMARK 465 LEU A 157 REMARK 465 MET A 158 REMARK 465 GLY A 159 REMARK 465 LEU A 160 REMARK 465 PHE A 161 REMARK 465 VAL A 162 REMARK 465 VAL A 163 REMARK 465 ILE A 164 REMARK 465 LEU A 165 REMARK 465 THR A 166 REMARK 465 ILE A 167 REMARK 465 MET A 168 REMARK 465 ALA A 169 REMARK 465 LEU A 170 REMARK 465 SER A 171 REMARK 465 ASN A 172 REMARK 465 MET A 173 REMARK 465 ARG A 174 REMARK 465 LEU A 175 REMARK 465 LYS A 176 REMARK 465 SER A 177 REMARK 465 THR A 178 REMARK 465 VAL A 179 REMARK 465 ASP A 214 REMARK 465 PRO A 215 REMARK 465 PHE A 216 REMARK 465 GLN A 217 REMARK 465 SER A 218 REMARK 465 GLU A 274 REMARK 465 MET A 275 REMARK 465 SER A 276 REMARK 465 SER A 277 REMARK 465 GLY A 278 REMARK 465 ALA A 279 REMARK 465 LYS A 413 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 ASP B 3 REMARK 465 ASN B 4 REMARK 465 GLU B 5 REMARK 465 LYS B 6 REMARK 465 ILE B 7 REMARK 465 ASN B 8 REMARK 465 ARG B 9 REMARK 465 GLU B 10 REMARK 465 ALA B 11 REMARK 465 LEU B 12 REMARK 465 ALA B 13 REMARK 465 PRO B 14 REMARK 465 ARG B 15 REMARK 465 GLU B 16 REMARK 465 TYR B 17 REMARK 465 GLY B 18 REMARK 465 GLU B 19 REMARK 465 ALA B 125 REMARK 465 LYS B 126 REMARK 465 SER B 127 REMARK 465 GLN B 128 REMARK 465 GLU B 129 REMARK 465 SER B 130 REMARK 465 VAL B 131 REMARK 465 LYS B 132 REMARK 465 SER B 133 REMARK 465 TYR B 134 REMARK 465 ILE B 135 REMARK 465 LEU B 136 REMARK 465 LEU B 137 REMARK 465 PHE B 138 REMARK 465 VAL B 139 REMARK 465 MET B 140 REMARK 465 PHE B 141 REMARK 465 THR B 142 REMARK 465 VAL B 143 REMARK 465 MET B 144 REMARK 465 LEU B 145 REMARK 465 ALA B 146 REMARK 465 LEU B 147 REMARK 465 PHE B 148 REMARK 465 ILE B 149 REMARK 465 GLU B 150 REMARK 465 PHE B 151 REMARK 465 SER B 152 REMARK 465 ALA B 153 REMARK 465 THR B 154 REMARK 465 THR B 155 REMARK 465 LEU B 156 REMARK 465 LEU B 157 REMARK 465 MET B 158 REMARK 465 GLY B 159 REMARK 465 LEU B 160 REMARK 465 PHE B 161 REMARK 465 VAL B 162 REMARK 465 VAL B 163 REMARK 465 ILE B 164 REMARK 465 LEU B 165 REMARK 465 THR B 166 REMARK 465 ILE B 167 REMARK 465 MET B 168 REMARK 465 ALA B 169 REMARK 465 LEU B 170 REMARK 465 SER B 171 REMARK 465 ASN B 172 REMARK 465 MET B 173 REMARK 465 ARG B 174 REMARK 465 LEU B 175 REMARK 465 LYS B 176 REMARK 465 SER B 177 REMARK 465 THR B 178 REMARK 465 VAL B 179 REMARK 465 PRO B 215 REMARK 465 PHE B 216 REMARK 465 GLN B 217 REMARK 465 SER B 218 REMARK 465 GLY B 219 REMARK 465 LYS B 413 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 34 CG CD OE1 OE2 REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 GLU A 87 CG CD OE1 OE2 REMARK 470 ARG A 105 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 107 CG CD CE NZ REMARK 470 ARG A 115 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 116 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 119 CG CD OE1 OE2 REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 HIS A 213 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 253 CG CD CE NZ REMARK 470 GLU A 264 CG CD OE1 OE2 REMARK 470 SER A 273 OG REMARK 470 MET A 280 CG SD CE REMARK 470 LYS A 303 CG CD CE NZ REMARK 470 GLU A 330 CG CD OE1 OE2 REMARK 470 LYS A 371 CG CD CE NZ REMARK 470 LYS A 398 CG CD CE NZ REMARK 470 LYS A 410 CG CD CE NZ REMARK 470 MET A 411 CG SD CE REMARK 470 GLU B 34 CG CD OE1 OE2 REMARK 470 GLU B 47 CG CD OE1 OE2 REMARK 470 GLU B 87 CG CD OE1 OE2 REMARK 470 ARG B 105 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 107 CG CD CE NZ REMARK 470 ARG B 115 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 122 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 213 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 253 CG CD CE NZ REMARK 470 GLU B 264 CG CD OE1 OE2 REMARK 470 GLU B 274 CG CD OE1 OE2 REMARK 470 SER B 276 OG REMARK 470 SER B 277 OG REMARK 470 LYS B 303 CG CD CE NZ REMARK 470 GLU B 330 CG CD OE1 OE2 REMARK 470 LYS B 371 CG CD CE NZ REMARK 470 LYS B 398 CG CD CE NZ REMARK 470 LYS B 410 CG CD CE NZ REMARK 470 MET B 411 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N GLN A 46 O HOH A 601 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 30 -7.33 -58.86 REMARK 500 LYS A 60 62.50 61.01 REMARK 500 ASP A 100 87.30 -155.13 REMARK 500 CYS A 112 -32.43 89.91 REMARK 500 CYS A 288 59.01 -153.14 REMARK 500 CYS B 112 -27.64 86.12 REMARK 500 CYS B 288 50.91 -156.26 REMARK 500 ASN B 297 -178.62 -69.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501 DBREF 4ZPX A 1 413 UNP B6YU74 B6YU74_THEON 1 413 DBREF 4ZPX B 1 413 UNP B6YU74 B6YU74_THEON 1 413 SEQRES 1 A 413 MET GLY ASP ASN GLU LYS ILE ASN ARG GLU ALA LEU ALA SEQRES 2 A 413 PRO ARG GLU TYR GLY GLU SER LEU GLU LEU GLY ILE GLU SEQRES 3 A 413 PHE THR THR THR GLU GLU ILE GLU VAL PRO GLU LYS LEU SEQRES 4 A 413 ILE ASP GLN VAL ILE GLY GLN GLU HIS ALA VAL GLU VAL SEQRES 5 A 413 ILE LYS THR ALA ALA ASN GLN LYS ARG HIS VAL LEU LEU SEQRES 6 A 413 ILE GLY GLU PRO GLY THR GLY LYS SER MET LEU GLY GLN SEQRES 7 A 413 ALA MET ALA GLU LEU LEU PRO THR GLU THR LEU GLU ASP SEQRES 8 A 413 ILE LEU VAL PHE PRO ASN PRO GLU ASP GLU ASN MET PRO SEQRES 9 A 413 ARG ILE LYS THR VAL PRO ALA CYS GLN GLY ARG ARG ILE SEQRES 10 A 413 VAL GLU LYS TYR ARG GLU LYS ALA LYS SER GLN GLU SER SEQRES 11 A 413 VAL LYS SER TYR ILE LEU LEU PHE VAL MET PHE THR VAL SEQRES 12 A 413 MET LEU ALA LEU PHE ILE GLU PHE SER ALA THR THR LEU SEQRES 13 A 413 LEU MET GLY LEU PHE VAL VAL ILE LEU THR ILE MET ALA SEQRES 14 A 413 LEU SER ASN MET ARG LEU LYS SER THR VAL LEU VAL PRO SEQRES 15 A 413 LYS LEU LEU VAL ASP ASN CYS GLY ARG THR LYS ALA PRO SEQRES 16 A 413 PHE ILE ASP ALA THR GLY ALA HIS ALA GLY ALA LEU LEU SEQRES 17 A 413 GLY ASP VAL ARG HIS ASP PRO PHE GLN SER GLY GLY LEU SEQRES 18 A 413 GLY THR PRO ALA HIS GLU ARG VAL GLU PRO GLY MET ILE SEQRES 19 A 413 HIS ARG ALA HIS LYS GLY VAL LEU PHE ILE ASP GLU ILE SEQRES 20 A 413 ALA THR LEU SER LEU LYS MET GLN GLN SER LEU LEU THR SEQRES 21 A 413 ALA MET GLN GLU LYS LYS PHE PRO ILE THR GLY GLN SER SEQRES 22 A 413 GLU MET SER SER GLY ALA MET VAL ARG THR GLU PRO VAL SEQRES 23 A 413 PRO CYS ASP PHE VAL LEU VAL ALA ALA GLY ASN LEU ASP SEQRES 24 A 413 THR VAL ASP LYS MET HIS PRO ALA LEU ARG SER ARG ILE SEQRES 25 A 413 ARG GLY TYR GLY TYR GLU VAL TYR MET ARG THR THR MET SEQRES 26 A 413 PRO ASP THR ILE GLU ASN ARG ARG LYS LEU VAL GLN PHE SEQRES 27 A 413 VAL ALA GLN GLU VAL LYS ARG ASP GLY LYS ILE PRO HIS SEQRES 28 A 413 PHE THR LYS GLU ALA VAL GLU GLU ILE VAL ARG GLU ALA SEQRES 29 A 413 GLN LYS ARG ALA GLY ARG LYS GLY HIS LEU THR LEU ARG SEQRES 30 A 413 LEU ARG ASP LEU GLY GLY ILE VAL ARG ALA ALA GLY ASP SEQRES 31 A 413 ILE ALA VAL LYS LYS GLY LYS LYS TYR VAL GLU ARG GLU SEQRES 32 A 413 ASP VAL ILE GLU ALA VAL LYS MET ALA LYS SEQRES 1 B 413 MET GLY ASP ASN GLU LYS ILE ASN ARG GLU ALA LEU ALA SEQRES 2 B 413 PRO ARG GLU TYR GLY GLU SER LEU GLU LEU GLY ILE GLU SEQRES 3 B 413 PHE THR THR THR GLU GLU ILE GLU VAL PRO GLU LYS LEU SEQRES 4 B 413 ILE ASP GLN VAL ILE GLY GLN GLU HIS ALA VAL GLU VAL SEQRES 5 B 413 ILE LYS THR ALA ALA ASN GLN LYS ARG HIS VAL LEU LEU SEQRES 6 B 413 ILE GLY GLU PRO GLY THR GLY LYS SER MET LEU GLY GLN SEQRES 7 B 413 ALA MET ALA GLU LEU LEU PRO THR GLU THR LEU GLU ASP SEQRES 8 B 413 ILE LEU VAL PHE PRO ASN PRO GLU ASP GLU ASN MET PRO SEQRES 9 B 413 ARG ILE LYS THR VAL PRO ALA CYS GLN GLY ARG ARG ILE SEQRES 10 B 413 VAL GLU LYS TYR ARG GLU LYS ALA LYS SER GLN GLU SER SEQRES 11 B 413 VAL LYS SER TYR ILE LEU LEU PHE VAL MET PHE THR VAL SEQRES 12 B 413 MET LEU ALA LEU PHE ILE GLU PHE SER ALA THR THR LEU SEQRES 13 B 413 LEU MET GLY LEU PHE VAL VAL ILE LEU THR ILE MET ALA SEQRES 14 B 413 LEU SER ASN MET ARG LEU LYS SER THR VAL LEU VAL PRO SEQRES 15 B 413 LYS LEU LEU VAL ASP ASN CYS GLY ARG THR LYS ALA PRO SEQRES 16 B 413 PHE ILE ASP ALA THR GLY ALA HIS ALA GLY ALA LEU LEU SEQRES 17 B 413 GLY ASP VAL ARG HIS ASP PRO PHE GLN SER GLY GLY LEU SEQRES 18 B 413 GLY THR PRO ALA HIS GLU ARG VAL GLU PRO GLY MET ILE SEQRES 19 B 413 HIS ARG ALA HIS LYS GLY VAL LEU PHE ILE ASP GLU ILE SEQRES 20 B 413 ALA THR LEU SER LEU LYS MET GLN GLN SER LEU LEU THR SEQRES 21 B 413 ALA MET GLN GLU LYS LYS PHE PRO ILE THR GLY GLN SER SEQRES 22 B 413 GLU MET SER SER GLY ALA MET VAL ARG THR GLU PRO VAL SEQRES 23 B 413 PRO CYS ASP PHE VAL LEU VAL ALA ALA GLY ASN LEU ASP SEQRES 24 B 413 THR VAL ASP LYS MET HIS PRO ALA LEU ARG SER ARG ILE SEQRES 25 B 413 ARG GLY TYR GLY TYR GLU VAL TYR MET ARG THR THR MET SEQRES 26 B 413 PRO ASP THR ILE GLU ASN ARG ARG LYS LEU VAL GLN PHE SEQRES 27 B 413 VAL ALA GLN GLU VAL LYS ARG ASP GLY LYS ILE PRO HIS SEQRES 28 B 413 PHE THR LYS GLU ALA VAL GLU GLU ILE VAL ARG GLU ALA SEQRES 29 B 413 GLN LYS ARG ALA GLY ARG LYS GLY HIS LEU THR LEU ARG SEQRES 30 B 413 LEU ARG ASP LEU GLY GLY ILE VAL ARG ALA ALA GLY ASP SEQRES 31 B 413 ILE ALA VAL LYS LYS GLY LYS LYS TYR VAL GLU ARG GLU SEQRES 32 B 413 ASP VAL ILE GLU ALA VAL LYS MET ALA LYS HET GOL A 501 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *243(H2 O) HELIX 1 AA1 THR A 29 ILE A 33 5 5 HELIX 2 AA2 LYS A 38 VAL A 43 1 6 HELIX 3 AA3 GLN A 46 LYS A 60 1 15 HELIX 4 AA4 GLY A 72 LEU A 84 1 13 HELIX 5 AA5 CYS A 112 TYR A 121 1 10 HELIX 6 AA6 HIS A 203 GLY A 209 1 7 HELIX 7 AA7 PRO A 224 ARG A 228 1 5 HELIX 8 AA8 GLY A 232 ALA A 237 1 6 HELIX 9 AA9 GLU A 246 LEU A 250 5 5 HELIX 10 AB1 SER A 251 LYS A 265 1 15 HELIX 11 AB2 THR A 300 MET A 304 5 5 HELIX 12 AB3 HIS A 305 GLY A 316 1 12 HELIX 13 AB4 THR A 328 GLY A 347 1 20 HELIX 14 AB5 THR A 353 GLY A 369 1 17 HELIX 15 AB6 ARG A 377 LYS A 395 1 19 HELIX 16 AB7 GLU A 401 ALA A 412 1 12 HELIX 17 AB8 THR B 29 ILE B 33 5 5 HELIX 18 AB9 LYS B 38 VAL B 43 1 6 HELIX 19 AC1 GLN B 46 LYS B 60 1 15 HELIX 20 AC2 GLY B 72 LEU B 84 1 13 HELIX 21 AC3 CYS B 112 LYS B 124 1 13 HELIX 22 AC4 HIS B 203 GLY B 209 1 7 HELIX 23 AC5 PRO B 224 ARG B 228 1 5 HELIX 24 AC6 GLY B 232 ALA B 237 1 6 HELIX 25 AC7 GLU B 246 LEU B 250 5 5 HELIX 26 AC8 SER B 251 LYS B 265 1 15 HELIX 27 AC9 SER B 276 MET B 280 5 5 HELIX 28 AD1 ASP B 299 MET B 304 1 6 HELIX 29 AD2 HIS B 305 GLY B 316 1 12 HELIX 30 AD3 THR B 328 GLY B 347 1 20 HELIX 31 AD4 THR B 353 ALA B 368 1 16 HELIX 32 AD5 ARG B 377 LYS B 395 1 19 HELIX 33 AD6 GLU B 401 MET B 411 1 11 SHEET 1 AA1 5 PHE A 196 ASP A 198 0 SHEET 2 AA1 5 VAL A 241 ILE A 244 1 O PHE A 243 N ILE A 197 SHEET 3 AA1 5 VAL A 291 GLY A 296 1 O VAL A 293 N LEU A 242 SHEET 4 AA1 5 VAL A 63 ILE A 66 1 N LEU A 65 O ALA A 294 SHEET 5 AA1 5 TYR A 317 TYR A 320 1 O VAL A 319 N ILE A 66 SHEET 1 AA2 3 ARG A 105 PRO A 110 0 SHEET 2 AA2 3 GLU A 90 PHE A 95 -1 N LEU A 93 O LYS A 107 SHEET 3 AA2 3 LYS A 183 VAL A 186 -1 O LEU A 185 N ILE A 92 SHEET 1 AA3 2 ASP A 210 VAL A 211 0 SHEET 2 AA3 2 VAL A 229 GLU A 230 -1 O GLU A 230 N ASP A 210 SHEET 1 AA4 2 LYS A 266 THR A 270 0 SHEET 2 AA4 2 ARG A 282 PRO A 287 -1 O THR A 283 N ILE A 269 SHEET 1 AA5 2 THR A 324 PRO A 326 0 SHEET 2 AA5 2 HIS A 373 THR A 375 -1 O LEU A 374 N MET A 325 SHEET 1 AA6 5 PHE B 196 ASP B 198 0 SHEET 2 AA6 5 VAL B 241 ILE B 244 1 O PHE B 243 N ILE B 197 SHEET 3 AA6 5 VAL B 291 GLY B 296 1 O VAL B 291 N LEU B 242 SHEET 4 AA6 5 VAL B 63 ILE B 66 1 N LEU B 65 O ALA B 294 SHEET 5 AA6 5 TYR B 317 TYR B 320 1 O VAL B 319 N LEU B 64 SHEET 1 AA7 3 ARG B 105 PRO B 110 0 SHEET 2 AA7 3 GLU B 90 PHE B 95 -1 N PHE B 95 O ARG B 105 SHEET 3 AA7 3 LYS B 183 VAL B 186 -1 O LYS B 183 N VAL B 94 SHEET 1 AA8 2 ASP B 210 VAL B 211 0 SHEET 2 AA8 2 VAL B 229 GLU B 230 -1 O GLU B 230 N ASP B 210 SHEET 1 AA9 2 LYS B 266 THR B 270 0 SHEET 2 AA9 2 ARG B 282 PRO B 287 -1 O THR B 283 N ILE B 269 SHEET 1 AB1 2 THR B 324 PRO B 326 0 SHEET 2 AB1 2 HIS B 373 THR B 375 -1 O LEU B 374 N MET B 325 SSBOND 1 CYS A 112 CYS A 189 1555 1555 2.11 SSBOND 2 CYS B 112 CYS B 189 1555 1555 2.09 SITE 1 AC1 6 LYS A 395 GLU A 403 ALA B 206 PRO B 231 SITE 2 AC1 6 GLY B 232 ARG B 236 CRYST1 40.620 61.599 76.321 74.61 87.11 83.45 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024618 -0.002826 -0.000521 0.00000 SCALE2 0.000000 0.016341 -0.004431 0.00000 SCALE3 0.000000 0.000000 0.013593 0.00000