HEADER TOXIN/INHIBITOR 11-MAY-15 4ZQW TITLE CDII FROM ESCHERICHIA COLI EC869 IN COMPLEX WITH A MACROCYCLIC PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNITY PROTEIN CDII-O11; COMPND 3 CHAIN: B, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MACROCYCLIC PEPTIDE; COMPND 7 CHAIN: A, C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O157:H7 (STRAIN EC869); SOURCE 3 ORGANISM_TAXID: 478008; SOURCE 4 STRAIN: EC869; SOURCE 5 GENE: CDII4, CDIIO11, ECH7EC869_5884; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562 KEYWDS IMMUNITY, MACROCYCLE, TOXIN, TOXIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.P.MORSE,C.W.GOULDING REVDAT 6 27-DEC-23 4ZQW 1 LINK REVDAT 5 25-DEC-19 4ZQW 1 REMARK REVDAT 4 27-MAR-19 4ZQW 1 SEQRES REVDAT 3 13-SEP-17 4ZQW 1 JRNL REMARK REVDAT 2 02-DEC-15 4ZQW 1 JRNL REVDAT 1 28-OCT-15 4ZQW 0 JRNL AUTH R.P.MORSE,J.L.WILLETT,P.M.JOHNSON,J.ZHENG,A.CREDALI, JRNL AUTH 2 A.INIGUEZ,J.S.NOWICK,C.S.HAYES,C.W.GOULDING JRNL TITL DIVERSIFICATION OF BETA-AUGMENTATION INTERACTIONS BETWEEN JRNL TITL 2 CDI TOXIN/IMMUNITY PROTEINS. JRNL REF J.MOL.BIOL. V. 427 3766 2015 JRNL REFN ESSN 1089-8638 JRNL PMID 26449640 JRNL DOI 10.1016/J.JMB.2015.09.020 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 23526 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.520 REMARK 3 FREE R VALUE TEST SET COUNT : 2004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.8160 - 4.8193 0.99 1612 154 0.1617 0.2281 REMARK 3 2 4.8193 - 3.8268 1.00 1584 146 0.1462 0.1659 REMARK 3 3 3.8268 - 3.3435 0.99 1605 150 0.1698 0.1968 REMARK 3 4 3.3435 - 3.0380 0.99 1561 145 0.1878 0.2289 REMARK 3 5 3.0380 - 2.8203 0.98 1570 149 0.2037 0.2909 REMARK 3 6 2.8203 - 2.6541 0.98 1540 146 0.2202 0.2367 REMARK 3 7 2.6541 - 2.5212 0.97 1545 139 0.2074 0.2986 REMARK 3 8 2.5212 - 2.4115 0.96 1555 144 0.2152 0.2659 REMARK 3 9 2.4115 - 2.3187 0.96 1503 147 0.2046 0.2639 REMARK 3 10 2.3187 - 2.2387 0.95 1524 144 0.2171 0.2691 REMARK 3 11 2.2387 - 2.1687 0.96 1509 140 0.2283 0.2911 REMARK 3 12 2.1687 - 2.1067 0.93 1498 135 0.2253 0.3074 REMARK 3 13 2.1067 - 2.0513 0.96 1494 136 0.2303 0.2812 REMARK 3 14 2.0513 - 2.0012 0.88 1422 129 0.2567 0.3194 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2874 REMARK 3 ANGLE : 1.222 3885 REMARK 3 CHIRALITY : 0.044 435 REMARK 3 PLANARITY : 0.007 496 REMARK 3 DIHEDRAL : 12.711 1063 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9595 16.6783 3.5213 REMARK 3 T TENSOR REMARK 3 T11: 0.1926 T22: 0.2411 REMARK 3 T33: 0.2680 T12: 0.0223 REMARK 3 T13: -0.0550 T23: 0.0359 REMARK 3 L TENSOR REMARK 3 L11: 4.5296 L22: 7.4229 REMARK 3 L33: 6.3780 L12: 2.1975 REMARK 3 L13: 0.6246 L23: 1.3660 REMARK 3 S TENSOR REMARK 3 S11: -0.0184 S12: -0.0121 S13: 0.0798 REMARK 3 S21: -0.0023 S22: -0.0224 S23: -0.0833 REMARK 3 S31: 0.3155 S32: 0.2374 S33: 0.0192 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 48 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4015 23.0783 5.4925 REMARK 3 T TENSOR REMARK 3 T11: 0.2393 T22: 0.3391 REMARK 3 T33: 0.3493 T12: -0.0236 REMARK 3 T13: -0.1409 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 2.1131 L22: 8.7273 REMARK 3 L33: 1.8814 L12: -0.2451 REMARK 3 L13: -1.7658 L23: -1.3390 REMARK 3 S TENSOR REMARK 3 S11: -0.0629 S12: -0.3183 S13: 0.3719 REMARK 3 S21: 0.0715 S22: 0.2174 S23: -0.5322 REMARK 3 S31: 0.0841 S32: 0.1797 S33: -0.1557 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 77 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8305 13.0005 1.5073 REMARK 3 T TENSOR REMARK 3 T11: 0.2463 T22: 0.2348 REMARK 3 T33: 0.3187 T12: -0.0394 REMARK 3 T13: -0.0869 T23: 0.0352 REMARK 3 L TENSOR REMARK 3 L11: 4.0247 L22: 4.9529 REMARK 3 L33: 7.1796 L12: -0.0020 REMARK 3 L13: 1.1332 L23: -0.0361 REMARK 3 S TENSOR REMARK 3 S11: 0.0262 S12: 0.0510 S13: -0.0358 REMARK 3 S21: -0.2943 S22: -0.0010 S23: 0.4086 REMARK 3 S31: 0.3100 S32: -0.3431 S33: -0.0336 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0820 23.0718 2.5818 REMARK 3 T TENSOR REMARK 3 T11: 0.3908 T22: 0.3339 REMARK 3 T33: 0.6348 T12: -0.0061 REMARK 3 T13: -0.1307 T23: 0.0832 REMARK 3 L TENSOR REMARK 3 L11: 7.9900 L22: 2.8153 REMARK 3 L33: 8.7671 L12: 1.0087 REMARK 3 L13: -5.6486 L23: -0.1786 REMARK 3 S TENSOR REMARK 3 S11: 0.2852 S12: -0.1105 S13: 0.6200 REMARK 3 S21: 0.0533 S22: -0.1505 S23: 0.1561 REMARK 3 S31: -0.3420 S32: 0.2046 S33: -0.1210 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 2 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7870 47.4834 4.9375 REMARK 3 T TENSOR REMARK 3 T11: 0.2063 T22: 0.2643 REMARK 3 T33: 0.2495 T12: 0.0271 REMARK 3 T13: 0.0732 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 3.2131 L22: 6.5232 REMARK 3 L33: 4.8326 L12: 1.1911 REMARK 3 L13: 0.2422 L23: 0.1503 REMARK 3 S TENSOR REMARK 3 S11: 0.0198 S12: -0.1856 S13: 0.0866 REMARK 3 S21: 0.1475 S22: 0.0068 S23: 0.4038 REMARK 3 S31: -0.4106 S32: -0.3496 S33: -0.0315 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 68 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8460 29.4285 0.0594 REMARK 3 T TENSOR REMARK 3 T11: 0.3578 T22: 0.2660 REMARK 3 T33: 0.6376 T12: 0.0025 REMARK 3 T13: 0.0839 T23: -0.0726 REMARK 3 L TENSOR REMARK 3 L11: 8.1106 L22: 7.5963 REMARK 3 L33: 6.6736 L12: 3.3924 REMARK 3 L13: 3.5577 L23: -4.1294 REMARK 3 S TENSOR REMARK 3 S11: 0.1354 S12: 0.1866 S13: -1.3118 REMARK 3 S21: -0.4660 S22: 0.7307 S23: -0.0385 REMARK 3 S31: -0.3314 S32: 0.2321 S33: -0.8600 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 77 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6453 49.0289 -3.1255 REMARK 3 T TENSOR REMARK 3 T11: 0.2978 T22: 0.2938 REMARK 3 T33: 0.3335 T12: -0.0537 REMARK 3 T13: 0.1097 T23: -0.0504 REMARK 3 L TENSOR REMARK 3 L11: 3.3760 L22: 4.6787 REMARK 3 L33: 6.9660 L12: -0.6779 REMARK 3 L13: -1.2607 L23: 0.9707 REMARK 3 S TENSOR REMARK 3 S11: -0.0409 S12: 0.3753 S13: -0.1019 REMARK 3 S21: -0.6964 S22: -0.0083 S23: -0.3692 REMARK 3 S31: -0.0879 S32: 0.2939 S33: 0.0541 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 139 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7833 56.4124 12.1278 REMARK 3 T TENSOR REMARK 3 T11: 0.4671 T22: 0.3918 REMARK 3 T33: 0.3391 T12: -0.1247 REMARK 3 T13: 0.0694 T23: -0.1524 REMARK 3 L TENSOR REMARK 3 L11: 5.4434 L22: 5.1750 REMARK 3 L33: 4.9141 L12: -0.0589 REMARK 3 L13: -0.0949 L23: -1.4060 REMARK 3 S TENSOR REMARK 3 S11: 0.2173 S12: -0.6971 S13: 0.3471 REMARK 3 S21: 0.6284 S22: -0.0649 S23: -0.2866 REMARK 3 S31: -0.7305 S32: 0.4667 S33: -0.1980 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2940 41.1969 2.5905 REMARK 3 T TENSOR REMARK 3 T11: 0.3820 T22: 0.3312 REMARK 3 T33: 0.6357 T12: 0.0430 REMARK 3 T13: 0.1608 T23: -0.0463 REMARK 3 L TENSOR REMARK 3 L11: 6.2966 L22: 2.1654 REMARK 3 L33: 6.3771 L12: 0.8107 REMARK 3 L13: 3.9444 L23: -0.9160 REMARK 3 S TENSOR REMARK 3 S11: 0.0727 S12: -0.2804 S13: -0.7710 REMARK 3 S21: -0.0609 S22: 0.0090 S23: -0.2217 REMARK 3 S31: -0.1140 S32: -0.1576 S33: -0.0660 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZQW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000201836. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23561 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM ACETATE, 0.1 M BIS-TRIS REMARK 280 PROPANE, PH 6.9, 20% PEG 3350, PH 6.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 64.08300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE MACROCYCLIC PEPTIDE IS CYCLIC PEPTIDE, A MEMBER OF INHIBITOR REMARK 400 CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: MACROCYCLIC PEPTIDE REMARK 400 CHAIN: A, C REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 SER B 169 REMARK 465 LEU B 170 REMARK 465 GLU B 171 REMARK 465 HIS B 172 REMARK 465 HIS B 173 REMARK 465 HIS B 174 REMARK 465 HIS B 175 REMARK 465 HIS B 176 REMARK 465 HIS B 177 REMARK 465 MET D 1 REMARK 465 SER D 169 REMARK 465 LEU D 170 REMARK 465 GLU D 171 REMARK 465 HIS D 172 REMARK 465 HIS D 173 REMARK 465 HIS D 174 REMARK 465 HIS D 175 REMARK 465 HIS D 176 REMARK 465 HIS D 177 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 5 CG CD CE NZ REMARK 470 GLN B 43 CG CD OE1 NE2 REMARK 470 GLU B 78 CG CD OE1 OE2 REMARK 470 GLU B 82 CG CD OE1 OE2 REMARK 470 GLU B 93 CG CD OE1 OE2 REMARK 470 ASP B 117 CG OD1 OD2 REMARK 470 GLU B 139 CG CD OE1 OE2 REMARK 470 LYS B 166 CG CD CE NZ REMARK 470 LYS D 5 CG CD CE NZ REMARK 470 GLN D 43 CG CD OE1 NE2 REMARK 470 GLU D 78 CG CD OE1 OE2 REMARK 470 ASP D 117 CG OD1 OD2 REMARK 470 GLU D 139 CG CD OE1 OE2 REMARK 470 LYS D 166 CG CD CE NZ REMARK 470 THR D 168 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA SER A 1 C THR A 13 2.15 REMARK 500 N SER C 1 O THR C 13 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 28 102.13 -171.50 REMARK 500 ARG B 40 64.26 76.85 REMARK 500 ASN B 116 -119.37 56.27 REMARK 500 LEU D 28 101.41 -170.72 REMARK 500 ASN D 116 -117.76 56.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 101 DBREF 4ZQW B 1 167 UNP B3BM81 CDII4_ECO5C 1 167 DBREF 4ZQW A 1 13 PDB 4ZQW 4ZQW 1 13 DBREF 4ZQW D 1 167 UNP B3BM81 CDII4_ECO5C 1 167 DBREF 4ZQW C 1 13 PDB 4ZQW 4ZQW 1 13 SEQADV 4ZQW THR B 168 UNP B3BM81 EXPRESSION TAG SEQADV 4ZQW SER B 169 UNP B3BM81 EXPRESSION TAG SEQADV 4ZQW LEU B 170 UNP B3BM81 EXPRESSION TAG SEQADV 4ZQW GLU B 171 UNP B3BM81 EXPRESSION TAG SEQADV 4ZQW HIS B 172 UNP B3BM81 EXPRESSION TAG SEQADV 4ZQW HIS B 173 UNP B3BM81 EXPRESSION TAG SEQADV 4ZQW HIS B 174 UNP B3BM81 EXPRESSION TAG SEQADV 4ZQW HIS B 175 UNP B3BM81 EXPRESSION TAG SEQADV 4ZQW HIS B 176 UNP B3BM81 EXPRESSION TAG SEQADV 4ZQW HIS B 177 UNP B3BM81 EXPRESSION TAG SEQADV 4ZQW THR D 168 UNP B3BM81 EXPRESSION TAG SEQADV 4ZQW SER D 169 UNP B3BM81 EXPRESSION TAG SEQADV 4ZQW LEU D 170 UNP B3BM81 EXPRESSION TAG SEQADV 4ZQW GLU D 171 UNP B3BM81 EXPRESSION TAG SEQADV 4ZQW HIS D 172 UNP B3BM81 EXPRESSION TAG SEQADV 4ZQW HIS D 173 UNP B3BM81 EXPRESSION TAG SEQADV 4ZQW HIS D 174 UNP B3BM81 EXPRESSION TAG SEQADV 4ZQW HIS D 175 UNP B3BM81 EXPRESSION TAG SEQADV 4ZQW HIS D 176 UNP B3BM81 EXPRESSION TAG SEQADV 4ZQW HIS D 177 UNP B3BM81 EXPRESSION TAG SEQRES 1 B 177 MET ALA PHE ASN LYS ASP GLN ASP TYR TRP ALA ASN ILE SEQRES 2 B 177 PHE VAL THR PRO ASP PHE LEU SER VAL GLU THR TYR SER SEQRES 3 B 177 GLY LEU GLY MET THR GLY ARG ASP PRO LEU PHE SER PRO SEQRES 4 B 177 ARG LEU LEU GLN PRO ASP VAL ASP ASP LYS SER LEU GLY SEQRES 5 B 177 GLU GLU ILE LEU GLN ALA LEU SER ASP SER ARG THR LEU SEQRES 6 B 177 ASP VAL LEU GLU GLU ARG VAL ALA PHE PHE ASP LEU GLU SEQRES 7 B 177 LYS SER LYS GLU GLN TYR ALA ALA TRP ILE ALA THR LEU SEQRES 8 B 177 MET GLU LYS TYR GLY TYR ARG THR LYS ARG ALA LEU PHE SEQRES 9 B 177 LYS ASN MET LYS LYS VAL GLY ILE HIS LEU VAL ASN ASP SEQRES 10 B 177 VAL ILE THR ILE ARG PRO SER PHE HIS GLU LYS LEU GLU SEQRES 11 B 177 ALA TRP SER GLY ASN ARG ILE ASN GLU SER ASP TYR VAL SEQRES 12 B 177 VAL LEU PRO ALA ASP SER SER PRO THR GLU ILE GLY SER SEQRES 13 B 177 GLY LEU ARG LEU ALA LEU SER ARG CYS LYS GLY THR SER SEQRES 14 B 177 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 A 13 SER ORN LYS GLU TYR ALA LEU SER GLY ARG GLU LEU THR SEQRES 1 D 177 MET ALA PHE ASN LYS ASP GLN ASP TYR TRP ALA ASN ILE SEQRES 2 D 177 PHE VAL THR PRO ASP PHE LEU SER VAL GLU THR TYR SER SEQRES 3 D 177 GLY LEU GLY MET THR GLY ARG ASP PRO LEU PHE SER PRO SEQRES 4 D 177 ARG LEU LEU GLN PRO ASP VAL ASP ASP LYS SER LEU GLY SEQRES 5 D 177 GLU GLU ILE LEU GLN ALA LEU SER ASP SER ARG THR LEU SEQRES 6 D 177 ASP VAL LEU GLU GLU ARG VAL ALA PHE PHE ASP LEU GLU SEQRES 7 D 177 LYS SER LYS GLU GLN TYR ALA ALA TRP ILE ALA THR LEU SEQRES 8 D 177 MET GLU LYS TYR GLY TYR ARG THR LYS ARG ALA LEU PHE SEQRES 9 D 177 LYS ASN MET LYS LYS VAL GLY ILE HIS LEU VAL ASN ASP SEQRES 10 D 177 VAL ILE THR ILE ARG PRO SER PHE HIS GLU LYS LEU GLU SEQRES 11 D 177 ALA TRP SER GLY ASN ARG ILE ASN GLU SER ASP TYR VAL SEQRES 12 D 177 VAL LEU PRO ALA ASP SER SER PRO THR GLU ILE GLY SER SEQRES 13 D 177 GLY LEU ARG LEU ALA LEU SER ARG CYS LYS GLY THR SER SEQRES 14 D 177 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 13 SER ORN LYS GLU TYR ALA LEU SER GLY ARG GLU LEU THR HET ORN A 2 18 HET ORN C 2 18 HET CL A 101 1 HET CL C 101 1 HETNAM ORN L-ORNITHINE HETNAM CL CHLORIDE ION FORMUL 2 ORN 2(C5 H12 N2 O2) FORMUL 5 CL 2(CL 1-) FORMUL 7 HOH *132(H2 O) HELIX 1 AA1 ASP B 47 ASP B 61 1 15 HELIX 2 AA2 VAL B 67 ASP B 76 1 10 HELIX 3 AA3 ASP B 76 GLY B 96 1 21 HELIX 4 AA4 THR B 99 ASN B 106 1 8 HELIX 5 AA5 ASN B 138 TYR B 142 5 5 HELIX 6 AA6 SER B 150 SER B 163 1 14 HELIX 7 AA7 ASP D 47 ASP D 61 1 15 HELIX 8 AA8 VAL D 67 PHE D 75 1 9 HELIX 9 AA9 ASP D 76 GLY D 96 1 21 HELIX 10 AB1 THR D 99 ASN D 106 1 8 HELIX 11 AB2 ASN D 138 TYR D 142 5 5 HELIX 12 AB3 SER D 150 CYS D 165 1 16 SHEET 1 AA1 6 LEU B 41 LEU B 42 0 SHEET 2 AA1 6 PHE B 19 GLY B 27 -1 N LEU B 20 O LEU B 42 SHEET 3 AA1 6 ASP B 8 THR B 16 -1 N PHE B 14 O SER B 21 SHEET 4 AA1 6 LYS B 108 VAL B 115 -1 O ILE B 112 N ALA B 11 SHEET 5 AA1 6 VAL B 118 ARG B 122 -1 O ARG B 122 N GLY B 111 SHEET 6 AA1 6 VAL B 143 PRO B 146 -1 O LEU B 145 N ILE B 119 SHEET 1 AA2 8 LEU B 41 LEU B 42 0 SHEET 2 AA2 8 PHE B 19 GLY B 27 -1 N LEU B 20 O LEU B 42 SHEET 3 AA2 8 MET B 30 ARG B 33 -1 O GLY B 32 N SER B 26 SHEET 4 AA2 8 ARG A 10 LEU A 12 -1 O GLU A 11 N THR B 31 SHEET 5 AA2 8 TYR A 5 LEU A 7 -1 N TYR A 5 O LEU A 12 SHEET 6 AA2 8 ALA B 131 SER B 133 -1 N TRP B 132 O ALA A 6 SHEET 7 AA2 8 PHE B 125 LYS B 128 -1 N PHE B 125 O SER B 133 SHEET 8 AA2 8 LYS B 166 GLY B 167 1 O LYS B 166 N HIS B 126 SHEET 1 AA3 7 LEU D 41 LEU D 42 0 SHEET 2 AA3 7 PHE D 19 GLY D 27 -1 N LEU D 20 O LEU D 42 SHEET 3 AA3 7 MET D 30 ARG D 33 -1 O GLY D 32 N SER D 26 SHEET 4 AA3 7 ARG C 10 LEU C 12 -1 O GLU C 11 N THR D 31 SHEET 5 AA3 7 TYR C 5 LEU C 7 -1 N TYR C 5 O LEU C 12 SHEET 6 AA3 7 ALA D 131 SER D 133 -1 N TRP D 132 O ALA C 6 SHEET 7 AA3 7 PHE D 125 LYS D 128 -1 N PHE D 125 O SER D 133 SHEET 1 AA4 6 LEU D 41 LEU D 42 0 SHEET 2 AA4 6 PHE D 19 GLY D 27 -1 N LEU D 20 O LEU D 42 SHEET 3 AA4 6 ASP D 8 THR D 16 -1 N PHE D 14 O SER D 21 SHEET 4 AA4 6 LYS D 108 VAL D 115 -1 O ILE D 112 N ALA D 11 SHEET 5 AA4 6 VAL D 118 ARG D 122 -1 O THR D 120 N HIS D 113 SHEET 6 AA4 6 VAL D 143 PRO D 146 -1 O LEU D 145 N ILE D 119 LINK C SER A 1 NE ORN A 2 1555 1555 1.33 LINK N SER A 1 C THR A 13 1555 1555 1.33 LINK C ORN A 2 N LYS A 3 1555 1555 1.32 LINK C SER C 1 NE ORN C 2 1555 1555 1.33 LINK N SER C 1 C THR C 13 1555 1555 1.33 LINK C ORN C 2 N LYS C 3 1555 1555 1.33 SITE 1 AC1 5 SER A 1 LEU A 12 THR A 13 GLY B 29 SITE 2 AC1 5 MET B 30 SITE 1 AC2 5 SER C 1 LEU C 12 THR C 13 GLY D 29 SITE 2 AC2 5 MET D 30 CRYST1 34.779 128.166 44.953 90.00 112.73 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028753 0.000000 0.012046 0.00000 SCALE2 0.000000 0.007802 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024119 0.00000