HEADER LYASE 11-MAY-15 4ZR8 TITLE STRUCTURE OF UROPORPHYRINOGEN DECARBOXYLASE FROM ACINETOBACTER TITLE 2 BAUMANNII COMPND MOL_ID: 1; COMPND 2 MOLECULE: UROPORPHYRINOGEN DECARBOXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: URO-D; COMPND 5 EC: 4.1.1.37; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII AB5075; SOURCE 3 ORGANISM_TAXID: 1116234; SOURCE 4 GENE: HEME, A591_A1129; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: ACBAC.01152.A.B1 KEYWDS SSGCID, ACINETOBACTER BAUMANNII, UROPORPHYRINOGEN DECARBOXYLASE, KEYWDS 2 STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 06-MAR-24 4ZR8 1 LINK REVDAT 2 22-NOV-17 4ZR8 1 SOURCE REMARK REVDAT 1 03-JUN-15 4ZR8 0 JRNL AUTH J.ABENDROTH,J.W.FAIRMAN,D.D.LORIMER,T.E.EDWARDS JRNL TITL STRUCTURE OF UROPORPHYRINOGEN DECARBOXYLASE FROM JRNL TITL 2 ACINETOBACTER BAUMANNII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 112318 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.131 REMARK 3 R VALUE (WORKING SET) : 0.129 REMARK 3 FREE R VALUE : 0.161 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 5705 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.8103 - 4.6546 0.99 3616 200 0.1403 0.1552 REMARK 3 2 4.6546 - 3.6969 1.00 3590 205 0.1176 0.1393 REMARK 3 3 3.6969 - 3.2303 1.00 3583 188 0.1312 0.1362 REMARK 3 4 3.2303 - 2.9353 1.00 3590 176 0.1405 0.1756 REMARK 3 5 2.9353 - 2.7251 1.00 3538 197 0.1414 0.1634 REMARK 3 6 2.7251 - 2.5645 1.00 3568 204 0.1301 0.1464 REMARK 3 7 2.5645 - 2.4362 1.00 3541 208 0.1289 0.1641 REMARK 3 8 2.4362 - 2.3302 1.00 3593 185 0.1252 0.1593 REMARK 3 9 2.3302 - 2.2405 1.00 3541 184 0.1221 0.1543 REMARK 3 10 2.2405 - 2.1632 1.00 3564 174 0.1192 0.1600 REMARK 3 11 2.1632 - 2.0956 1.00 3537 199 0.1212 0.1666 REMARK 3 12 2.0956 - 2.0357 1.00 3498 223 0.1228 0.1601 REMARK 3 13 2.0357 - 1.9821 1.00 3546 216 0.1234 0.1649 REMARK 3 14 1.9821 - 1.9338 1.00 3558 186 0.1179 0.1310 REMARK 3 15 1.9338 - 1.8898 1.00 3541 167 0.1118 0.1784 REMARK 3 16 1.8898 - 1.8496 1.00 3555 198 0.1184 0.1604 REMARK 3 17 1.8496 - 1.8126 1.00 3578 177 0.1210 0.1728 REMARK 3 18 1.8126 - 1.7784 1.00 3527 200 0.1210 0.1661 REMARK 3 19 1.7784 - 1.7467 1.00 3546 181 0.1177 0.1759 REMARK 3 20 1.7467 - 1.7171 1.00 3564 179 0.1184 0.1514 REMARK 3 21 1.7171 - 1.6894 1.00 3553 187 0.1264 0.1935 REMARK 3 22 1.6894 - 1.6634 1.00 3534 170 0.1255 0.1821 REMARK 3 23 1.6634 - 1.6389 1.00 3552 180 0.1251 0.1606 REMARK 3 24 1.6389 - 1.6158 1.00 3614 188 0.1291 0.1989 REMARK 3 25 1.6158 - 1.5940 1.00 3488 185 0.1336 0.1946 REMARK 3 26 1.5940 - 1.5733 1.00 3550 196 0.1475 0.2069 REMARK 3 27 1.5733 - 1.5536 1.00 3514 188 0.1508 0.1979 REMARK 3 28 1.5536 - 1.5349 1.00 3564 188 0.1491 0.2412 REMARK 3 29 1.5349 - 1.5171 1.00 3516 186 0.1655 0.2327 REMARK 3 30 1.5171 - 1.5000 1.00 3554 190 0.1744 0.2350 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5730 REMARK 3 ANGLE : 1.037 7819 REMARK 3 CHIRALITY : 0.046 885 REMARK 3 PLANARITY : 0.005 1009 REMARK 3 DIHEDRAL : 12.768 2114 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZR8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000209747. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-15; 17-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.65; 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; N REMARK 200 RADIATION SOURCE : APS; ROTATING ANODE REMARK 200 BEAMLINE : 21-ID-G; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856; 1.5418 REMARK 200 MONOCHROMATOR : DIAMOND(111); NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300; RIGAKU SATURN REMARK 200 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 112341 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.73 REMARK 200 R MERGE FOR SHELL (I) : 0.44800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.890 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NATIVE: MICROLYTICS MGSC1 SCREEN, B11: REMARK 280 18% PEG8000, 200 MM MAGNESIUM CHLORIDE, 100 MM TRIS-HCL, PH 7.65, REMARK 280 11 MG/ML ACBAC.001152.A.B1.PW3767 + 2 MM NAD, CRYOPROTECTANT: REMARK 280 20% ETHYLENE GLYCOL, TRAY 262775, PUCK KZO2-10, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 290K. IODIDE: MICROLYTICS MGSC1 SCREEN, REMARK 280 A12: 20% PEG4000, 200 MM CALCIUM CHLORIDE, 100 MM TRIS-HCL, PH REMARK 280 8.5, 11 MG/ML ACBAC.001152.A.B1.PW3767 + 2 MM NAD, REMARK 280 CRYOPROTECTANT: 10% ETHYLENE GLYCOL + 250 MM SODIUM IODIDE, THEN REMARK 280 20% ETHYLENE GLYCOL + 500 MM SODIUM IODIDE, TRAY 262775, PUCK REMARK 280 HML1-17, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.69000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 45 REMARK 465 PHE A 46 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 THR B 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 LEU A 47 CG CD1 CD2 REMARK 470 LEU A 49 CG CD1 CD2 REMARK 470 GLU A 92 CG CD OE1 OE2 REMARK 470 THR A 93 OG1 CG2 REMARK 470 GLU A 95 CG CD OE1 OE2 REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 ARG A 236 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 5 CG CD CE NZ REMARK 470 GLU B 38 CG CD OE1 OE2 REMARK 470 LYS B 42 CG CD CE NZ REMARK 470 ASP B 45 CG OD1 OD2 REMARK 470 PHE B 46 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU B 47 CG CD1 CD2 REMARK 470 GLU B 54 CG CD OE1 OE2 REMARK 470 GLU B 92 CG CD OE1 OE2 REMARK 470 THR B 93 OG1 CG2 REMARK 470 GLU B 95 CG CD OE1 OE2 REMARK 470 LYS B 162 CG CD CE NZ REMARK 470 GLU B 237 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 753 O HOH A 877 2.18 REMARK 500 O HOH B 846 O HOH B 855 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 76 -158.42 -161.17 REMARK 500 SER A 223 -62.07 -130.03 REMARK 500 ASN A 291 31.04 -144.40 REMARK 500 SER B 76 -160.07 -163.10 REMARK 500 SER B 223 -61.04 -130.91 REMARK 500 ASN B 291 31.08 -144.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 918 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 919 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A 920 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH B 877 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B 878 DISTANCE = 6.06 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 514 O REMARK 620 2 HOH A 528 O 175.6 REMARK 620 3 HOH A 642 O 95.8 81.8 REMARK 620 4 HOH A 851 O 79.6 103.9 86.8 REMARK 620 5 HOH B 777 O 85.0 91.1 87.2 162.8 REMARK 620 6 HOH B 841 O 90.4 91.8 173.0 97.5 90.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-ACBAC.01152.A RELATED DB: TARGETTRACK DBREF1 4ZR8 A 1 357 UNP A0A0A2T261_ACIBA DBREF2 4ZR8 A A0A0A2T261 1 357 DBREF1 4ZR8 B 1 357 UNP A0A0A2T261_ACIBA DBREF2 4ZR8 B A0A0A2T261 1 357 SEQADV 4ZR8 MET A -7 UNP A0A0A2T26 EXPRESSION TAG SEQADV 4ZR8 ALA A -6 UNP A0A0A2T26 EXPRESSION TAG SEQADV 4ZR8 HIS A -5 UNP A0A0A2T26 EXPRESSION TAG SEQADV 4ZR8 HIS A -4 UNP A0A0A2T26 EXPRESSION TAG SEQADV 4ZR8 HIS A -3 UNP A0A0A2T26 EXPRESSION TAG SEQADV 4ZR8 HIS A -2 UNP A0A0A2T26 EXPRESSION TAG SEQADV 4ZR8 HIS A -1 UNP A0A0A2T26 EXPRESSION TAG SEQADV 4ZR8 HIS A 0 UNP A0A0A2T26 EXPRESSION TAG SEQADV 4ZR8 MET B -7 UNP A0A0A2T26 EXPRESSION TAG SEQADV 4ZR8 ALA B -6 UNP A0A0A2T26 EXPRESSION TAG SEQADV 4ZR8 HIS B -5 UNP A0A0A2T26 EXPRESSION TAG SEQADV 4ZR8 HIS B -4 UNP A0A0A2T26 EXPRESSION TAG SEQADV 4ZR8 HIS B -3 UNP A0A0A2T26 EXPRESSION TAG SEQADV 4ZR8 HIS B -2 UNP A0A0A2T26 EXPRESSION TAG SEQADV 4ZR8 HIS B -1 UNP A0A0A2T26 EXPRESSION TAG SEQADV 4ZR8 HIS B 0 UNP A0A0A2T26 EXPRESSION TAG SEQRES 1 A 365 MET ALA HIS HIS HIS HIS HIS HIS MET THR THR LEU LYS SEQRES 2 A 365 ASN ASP ARG PHE LEU ARG ALA LEU LEU ARG GLU PRO VAL SEQRES 3 A 365 ASP THR THR PRO ILE TRP MET MET ARG GLN ALA GLY ARG SEQRES 4 A 365 TYR LEU PRO GLU TYR ARG GLU THR ARG SER LYS ALA GLY SEQRES 5 A 365 ASP PHE LEU SER LEU CYS LYS ASN THR GLU PHE ALA CYS SEQRES 6 A 365 GLU VAL THR LEU GLN PRO LEU ARG ARG TYR ASP LEU ASP SEQRES 7 A 365 ALA ALA ILE LEU PHE SER ASP ILE LEU THR ILE PRO ASP SEQRES 8 A 365 ALA LEU GLY LEU GLY LEU TYR PHE GLU THR GLY GLU GLY SEQRES 9 A 365 PRO LYS PHE HIS LYS THR VAL ARG THR GLU GLN ASP VAL SEQRES 10 A 365 ALA ASN LEU PRO LYS LEU ASN ALA LYS ALA ASP LEU ASP SEQRES 11 A 365 TYR VAL MET ASN ALA VAL SER THR ILE ARG SER ALA LEU SEQRES 12 A 365 GLY GLY GLN VAL PRO LEU ILE GLY PHE SER GLY SER PRO SEQRES 13 A 365 TRP THR LEU ALA THR TYR MET VAL GLU GLY GLY SER SER SEQRES 14 A 365 LYS GLU PHE ARG PHE THR LYS GLN MET MET TYR ALA GLN SEQRES 15 A 365 PRO GLU VAL LEU HIS ALA LEU LEU ASP HIS LEU ALA ASP SEQRES 16 A 365 SER VAL ILE ASP TYR LEU ASN ALA GLN ILE ASP ALA GLY SEQRES 17 A 365 ALA GLN ALA ILE GLN ILE PHE ASP SER TRP GLY GLY ALA SEQRES 18 A 365 LEU ALA HIS ARG GLU TYR VAL GLU PHE SER LEU ASN TYR SEQRES 19 A 365 MET LYS LYS ILE ILE ALA GLY LEU GLN ARG GLU LYS ASP SEQRES 20 A 365 GLY ARG ARG ILE PRO VAL ILE VAL PHE THR LYS GLY GLY SEQRES 21 A 365 GLY GLN TRP LEU GLU PRO MET ILE THR THR GLY ALA ASP SEQRES 22 A 365 ALA LEU GLY LEU ASP TRP THR THR PRO LEU ASN THR ALA SEQRES 23 A 365 ARG THR THR VAL ALA GLY ARG VAL ALA LEU GLN GLY ASN SEQRES 24 A 365 LEU ASP PRO ALA VAL LEU TYR GLY SER ALA ALA SER ILE SEQRES 25 A 365 GLU LYS ALA VAL LYS ALA MET LEU ASP ASP ALA TYR ALA SEQRES 26 A 365 ASN GLY GLU LYS THR GLY TYR VAL ALA ASN LEU GLY HIS SEQRES 27 A 365 GLY ILE THR GLN TRP VAL ASP PRO ALA GLN PRO LYS ILE SEQRES 28 A 365 PHE VAL ASP THR VAL HIS GLU TYR SER ALA LYS TYR LEU SEQRES 29 A 365 GLY SEQRES 1 B 365 MET ALA HIS HIS HIS HIS HIS HIS MET THR THR LEU LYS SEQRES 2 B 365 ASN ASP ARG PHE LEU ARG ALA LEU LEU ARG GLU PRO VAL SEQRES 3 B 365 ASP THR THR PRO ILE TRP MET MET ARG GLN ALA GLY ARG SEQRES 4 B 365 TYR LEU PRO GLU TYR ARG GLU THR ARG SER LYS ALA GLY SEQRES 5 B 365 ASP PHE LEU SER LEU CYS LYS ASN THR GLU PHE ALA CYS SEQRES 6 B 365 GLU VAL THR LEU GLN PRO LEU ARG ARG TYR ASP LEU ASP SEQRES 7 B 365 ALA ALA ILE LEU PHE SER ASP ILE LEU THR ILE PRO ASP SEQRES 8 B 365 ALA LEU GLY LEU GLY LEU TYR PHE GLU THR GLY GLU GLY SEQRES 9 B 365 PRO LYS PHE HIS LYS THR VAL ARG THR GLU GLN ASP VAL SEQRES 10 B 365 ALA ASN LEU PRO LYS LEU ASN ALA LYS ALA ASP LEU ASP SEQRES 11 B 365 TYR VAL MET ASN ALA VAL SER THR ILE ARG SER ALA LEU SEQRES 12 B 365 GLY GLY GLN VAL PRO LEU ILE GLY PHE SER GLY SER PRO SEQRES 13 B 365 TRP THR LEU ALA THR TYR MET VAL GLU GLY GLY SER SER SEQRES 14 B 365 LYS GLU PHE ARG PHE THR LYS GLN MET MET TYR ALA GLN SEQRES 15 B 365 PRO GLU VAL LEU HIS ALA LEU LEU ASP HIS LEU ALA ASP SEQRES 16 B 365 SER VAL ILE ASP TYR LEU ASN ALA GLN ILE ASP ALA GLY SEQRES 17 B 365 ALA GLN ALA ILE GLN ILE PHE ASP SER TRP GLY GLY ALA SEQRES 18 B 365 LEU ALA HIS ARG GLU TYR VAL GLU PHE SER LEU ASN TYR SEQRES 19 B 365 MET LYS LYS ILE ILE ALA GLY LEU GLN ARG GLU LYS ASP SEQRES 20 B 365 GLY ARG ARG ILE PRO VAL ILE VAL PHE THR LYS GLY GLY SEQRES 21 B 365 GLY GLN TRP LEU GLU PRO MET ILE THR THR GLY ALA ASP SEQRES 22 B 365 ALA LEU GLY LEU ASP TRP THR THR PRO LEU ASN THR ALA SEQRES 23 B 365 ARG THR THR VAL ALA GLY ARG VAL ALA LEU GLN GLY ASN SEQRES 24 B 365 LEU ASP PRO ALA VAL LEU TYR GLY SER ALA ALA SER ILE SEQRES 25 B 365 GLU LYS ALA VAL LYS ALA MET LEU ASP ASP ALA TYR ALA SEQRES 26 B 365 ASN GLY GLU LYS THR GLY TYR VAL ALA ASN LEU GLY HIS SEQRES 27 B 365 GLY ILE THR GLN TRP VAL ASP PRO ALA GLN PRO LYS ILE SEQRES 28 B 365 PHE VAL ASP THR VAL HIS GLU TYR SER ALA LYS TYR LEU SEQRES 29 B 365 GLY HET MG A 401 1 HET EDO A 402 4 HET EDO A 403 4 HET CL A 404 1 HET EDO A 405 4 HET EDO B 401 4 HET EDO B 402 4 HET EDO B 403 4 HET CL B 404 1 HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 MG MG 2+ FORMUL 4 EDO 6(C2 H6 O2) FORMUL 6 CL 2(CL 1-) FORMUL 12 HOH *798(H2 O) HELIX 1 AA1 ASP A 7 LEU A 14 1 8 HELIX 2 AA2 LEU A 33 LYS A 42 1 10 HELIX 3 AA3 SER A 48 ASN A 52 1 5 HELIX 4 AA4 ASN A 52 TYR A 67 1 16 HELIX 5 AA5 LEU A 79 LEU A 85 1 7 HELIX 6 AA6 THR A 105 LEU A 112 1 8 HELIX 7 AA7 ASN A 116 LEU A 121 1 6 HELIX 8 AA8 LEU A 121 GLY A 136 1 16 HELIX 9 AA9 SER A 147 GLY A 158 1 12 HELIX 10 AB1 PHE A 164 GLN A 174 1 11 HELIX 11 AB2 GLN A 174 GLY A 200 1 27 HELIX 12 AB3 TRP A 210 LEU A 214 5 5 HELIX 13 AB4 ALA A 215 SER A 223 1 9 HELIX 14 AB5 SER A 223 GLY A 233 1 11 HELIX 15 AB6 GLY A 252 GLN A 254 5 3 HELIX 16 AB7 TRP A 255 THR A 261 1 7 HELIX 17 AB8 PRO A 274 ALA A 283 1 10 HELIX 18 AB9 ASP A 293 GLY A 299 5 7 HELIX 19 AC1 SER A 300 ALA A 317 1 18 HELIX 20 AC2 ALA A 339 SER A 352 1 14 HELIX 21 AC3 SER A 352 GLY A 357 1 6 HELIX 22 AC4 ASP B 7 LEU B 14 1 8 HELIX 23 AC5 LEU B 33 ALA B 43 1 11 HELIX 24 AC6 ASP B 45 CYS B 50 5 6 HELIX 25 AC7 ASN B 52 TYR B 67 1 16 HELIX 26 AC8 LEU B 79 LEU B 85 1 7 HELIX 27 AC9 THR B 105 ASN B 111 1 7 HELIX 28 AD1 ASN B 116 LEU B 121 1 6 HELIX 29 AD2 LEU B 121 GLY B 136 1 16 HELIX 30 AD3 SER B 147 GLY B 158 1 12 HELIX 31 AD4 PHE B 164 GLN B 174 1 11 HELIX 32 AD5 GLN B 174 GLY B 200 1 27 HELIX 33 AD6 TRP B 210 LEU B 214 5 5 HELIX 34 AD7 ALA B 215 SER B 223 1 9 HELIX 35 AD8 SER B 223 GLY B 233 1 11 HELIX 36 AD9 GLY B 252 GLN B 254 5 3 HELIX 37 AE1 TRP B 255 THR B 261 1 7 HELIX 38 AE2 PRO B 274 ALA B 283 1 10 HELIX 39 AE3 ASP B 293 GLY B 299 5 7 HELIX 40 AE4 SER B 300 ALA B 317 1 18 HELIX 41 AE5 ALA B 339 SER B 352 1 14 HELIX 42 AE6 ALA B 353 TYR B 355 5 3 SHEET 1 AA1 7 ALA A 72 ILE A 73 0 SHEET 2 AA1 7 LEU A 141 GLY A 146 1 O ILE A 142 N ALA A 72 SHEET 3 AA1 7 ALA A 203 PHE A 207 1 O ALA A 203 N GLY A 143 SHEET 4 AA1 7 VAL A 245 PHE A 248 1 O ILE A 246 N ILE A 204 SHEET 5 AA1 7 ALA A 266 GLY A 268 1 O GLY A 268 N VAL A 247 SHEET 6 AA1 7 ALA A 287 LEU A 292 1 O GLN A 289 N LEU A 267 SHEET 7 AA1 7 TYR A 324 LEU A 328 1 O VAL A 325 N LEU A 288 SHEET 1 AA2 2 LEU A 89 GLU A 92 0 SHEET 2 AA2 2 GLY A 96 PHE A 99 -1 O LYS A 98 N TYR A 90 SHEET 1 AA3 2 GLU A 237 LYS A 238 0 SHEET 2 AA3 2 ARG A 241 ARG A 242 -1 O ARG A 241 N LYS A 238 SHEET 1 AA4 7 ALA B 72 ILE B 73 0 SHEET 2 AA4 7 LEU B 141 GLY B 146 1 O ILE B 142 N ALA B 72 SHEET 3 AA4 7 ALA B 203 PHE B 207 1 O ALA B 203 N GLY B 143 SHEET 4 AA4 7 VAL B 245 PHE B 248 1 O ILE B 246 N ILE B 204 SHEET 5 AA4 7 ALA B 266 GLY B 268 1 O GLY B 268 N VAL B 247 SHEET 6 AA4 7 ALA B 287 LEU B 292 1 O GLN B 289 N LEU B 267 SHEET 7 AA4 7 TYR B 324 LEU B 328 1 O VAL B 325 N LEU B 288 SHEET 1 AA5 2 LEU B 89 GLU B 92 0 SHEET 2 AA5 2 GLY B 96 PHE B 99 -1 O LYS B 98 N TYR B 90 SHEET 1 AA6 2 GLU B 237 LYS B 238 0 SHEET 2 AA6 2 ARG B 241 ARG B 242 -1 O ARG B 241 N LYS B 238 LINK MG MG A 401 O HOH A 514 1555 1555 2.18 LINK MG MG A 401 O HOH A 528 1555 1555 2.28 LINK MG MG A 401 O HOH A 642 1555 1555 2.14 LINK MG MG A 401 O HOH A 851 1555 1555 2.07 LINK MG MG A 401 O HOH B 777 1555 1554 2.13 LINK MG MG A 401 O HOH B 841 1555 1554 2.07 CISPEP 1 GLY A 290 ASN A 291 0 0.33 CISPEP 2 THR B 93 GLY B 94 0 -1.87 CISPEP 3 GLY B 290 ASN B 291 0 0.39 SITE 1 AC1 6 HOH A 514 HOH A 528 HOH A 642 HOH A 851 SITE 2 AC1 6 HOH B 777 HOH B 841 SITE 1 AC2 4 ASN A 225 TYR A 226 HOH A 585 HOH A 634 SITE 1 AC3 6 ARG A 27 ILE A 78 PHE A 207 CL A 404 SITE 2 AC3 6 HOH A 603 HOH A 606 SITE 1 AC4 4 MET A 26 ARG A 27 EDO A 403 HOH A 846 SITE 1 AC5 4 ARG A 165 GLN A 169 TYR B 298 TRP B 335 SITE 1 AC6 5 TYR A 298 TRP A 335 ARG B 165 GLN B 169 SITE 2 AC6 5 HOH B 528 SITE 1 AC7 4 ASN B 225 TYR B 226 HOH B 579 HOH B 684 SITE 1 AC8 6 ARG B 27 ILE B 78 PHE B 207 CL B 404 SITE 2 AC8 6 HOH B 510 HOH B 642 SITE 1 AC9 4 MET B 26 ARG B 27 EDO B 403 HOH B 805 CRYST1 65.540 83.380 68.460 90.00 106.97 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015258 0.000000 0.004655 0.00000 SCALE2 0.000000 0.011993 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015272 0.00000