HEADER SUGAR BINDING PROTEIN 12-MAY-15 4ZRV TITLE STRUCTURE OF COW MINCLE CRD COMPLEXED WITH TREHALOSE MONO BUTYRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MINCLE CRD; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 79-208; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: CLEC4E; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOBIOLOGY, CARBOHYDRATE-BINDING PROTEIN, C-TYPE LECTIN, COMPLEX, KEYWDS 2 SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.FEINBERG,N.D.S.RAMBARUTH,M.E.TAYLOR,K.DRICKAMER,W.I.WEIS REVDAT 5 09-AUG-23 4ZRV 1 HETSYN REVDAT 4 29-JUL-20 4ZRV 1 COMPND JRNL REMARK HET REVDAT 4 2 1 HETNAM HETSYN FORMUL LINK REVDAT 4 3 1 SITE ATOM REVDAT 3 19-OCT-16 4ZRV 1 JRNL REVDAT 2 31-AUG-16 4ZRV 1 JRNL REVDAT 1 25-MAY-16 4ZRV 0 JRNL AUTH H.FEINBERG,N.D.RAMBARUTH,S.A.JEGOUZO,K.M.JACOBSEN, JRNL AUTH 2 R.DJURHUUS,T.B.POULSEN,W.I.WEIS,M.E.TAYLOR,K.DRICKAMER JRNL TITL BINDING SITES FOR ACYLATED TREHALOSE ANALOGS OF GLYCOLIPID JRNL TITL 2 LIGANDS ON AN EXTENDED CARBOHYDRATE RECOGNITION DOMAIN OF JRNL TITL 3 THE MACROPHAGE RECEPTOR MINCLE. JRNL REF J.BIOL.CHEM. V. 291 21222 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27542410 JRNL DOI 10.1074/JBC.M116.749515 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 27244 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1367 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.2292 - 4.5122 0.97 2678 144 0.1481 0.1613 REMARK 3 2 4.5122 - 3.5823 0.99 2642 138 0.1280 0.1614 REMARK 3 3 3.5823 - 3.1297 0.98 2584 140 0.1559 0.2071 REMARK 3 4 3.1297 - 2.8437 0.99 2637 137 0.1612 0.1771 REMARK 3 5 2.8437 - 2.6399 0.99 2602 139 0.1703 0.2177 REMARK 3 6 2.6399 - 2.4843 0.96 2537 136 0.1828 0.2767 REMARK 3 7 2.4843 - 2.3599 0.99 2598 137 0.1854 0.2617 REMARK 3 8 2.3599 - 2.2572 0.98 2578 135 0.2004 0.2721 REMARK 3 9 2.2572 - 2.1703 0.98 2575 135 0.2096 0.3034 REMARK 3 10 2.1703 - 2.0954 0.93 2446 126 0.2397 0.2881 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 3539 REMARK 3 ANGLE : 1.106 4722 REMARK 3 CHIRALITY : 0.077 499 REMARK 3 PLANARITY : 0.004 619 REMARK 3 DIHEDRAL : 13.021 1269 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZRV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000209219. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033170 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27266 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.095 REMARK 200 RESOLUTION RANGE LOW (A) : 38.223 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08500 REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.46700 REMARK 200 R SYM FOR SHELL (I) : 0.46700 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 2.1 MG/ML MINCLE, REMARK 280 2.5 MM CACL2 AND 33 MM TMB. RESERVOIR SOLUTION: 20% PEG 4K, 20% REMARK 280 2-PROPANOL AND 0.1 M SODIUM ACETATE PH=5.6, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.33800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 210 REMARK 465 ILE A 211 REMARK 465 ARG B 209 REMARK 465 LYS B 210 REMARK 465 ILE B 211 REMARK 465 ARG C 209 REMARK 465 LYS C 210 REMARK 465 ILE C 211 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 82 -12.16 83.14 REMARK 500 GLN A 87 -118.08 54.93 REMARK 500 LEU A 161 48.51 -102.78 REMARK 500 LYS B 82 -4.17 74.98 REMARK 500 GLN B 87 -114.98 56.44 REMARK 500 MET B 98 175.57 179.84 REMARK 500 LEU B 161 44.56 -96.24 REMARK 500 PHE B 163 49.01 -140.40 REMARK 500 GLN C 87 -125.22 57.02 REMARK 500 LYS C 133 -44.19 74.73 REMARK 500 LEU C 161 50.54 -112.77 REMARK 500 VAL C 173 24.64 47.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 538 DISTANCE = 6.28 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 U8V D 2 REMARK 610 U8V E 2 REMARK 610 U8V F 2 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 116 O REMARK 620 2 ASN A 118 OD1 76.2 REMARK 620 3 GLU A 122 OE1 71.4 77.2 REMARK 620 4 GLU A 122 OE2 80.0 127.4 50.8 REMARK 620 5 GLU A 205 OE1 80.5 133.3 131.4 86.3 REMARK 620 6 GLU A 205 OE2 127.6 150.4 123.8 78.5 51.1 REMARK 620 7 HOH A 483 O 112.5 79.0 154.1 153.5 73.5 75.4 REMARK 620 8 HOH A 502 O 143.8 82.2 75.7 90.9 134.3 83.7 91.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 142 OD1 REMARK 620 2 ASP A 142 OD2 49.1 REMARK 620 3 GLU A 146 OE1 98.8 82.1 REMARK 620 4 GLU A 146 OE2 122.0 75.2 52.7 REMARK 620 5 ASN A 171 OD1 163.8 146.7 89.5 74.1 REMARK 620 6 GLU A 176 O 94.1 125.9 150.1 137.2 72.4 REMARK 620 7 ASP A 177 OD1 77.2 119.4 80.8 130.2 90.5 75.9 REMARK 620 8 HOH A 463 O 104.8 81.9 130.7 78.1 79.5 70.3 146.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 168 OE1 REMARK 620 2 ASN A 170 OD1 74.5 REMARK 620 3 GLU A 176 OE1 141.7 70.9 REMARK 620 4 ASN A 192 OD1 68.0 141.9 146.8 REMARK 620 5 ASP A 193 O 132.4 138.9 71.5 75.8 REMARK 620 6 ASP A 193 OD1 73.9 83.5 86.0 92.5 77.9 REMARK 620 7 U8V D 2 O3 73.9 80.6 115.4 82.6 131.4 146.9 REMARK 620 8 U8V D 2 O4 135.7 123.3 79.0 81.8 63.6 141.4 70.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 116 O REMARK 620 2 ASN B 118 OD1 80.4 REMARK 620 3 GLU B 122 OE1 76.3 80.8 REMARK 620 4 GLU B 122 OE2 83.2 130.2 49.6 REMARK 620 5 GLU B 205 OE1 78.8 137.4 128.5 83.4 REMARK 620 6 GLU B 205 OE2 127.7 147.6 118.2 75.1 52.2 REMARK 620 7 HOH B 484 O 108.0 79.4 158.6 150.3 72.4 76.5 REMARK 620 8 HOH B 492 O 150.0 82.8 76.6 89.0 129.2 77.2 93.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 142 OD1 REMARK 620 2 ASP B 142 OD2 48.9 REMARK 620 3 GLU B 146 OE1 105.5 83.8 REMARK 620 4 GLU B 146 OE2 120.7 72.6 52.5 REMARK 620 5 ASN B 171 OD1 166.2 144.8 81.8 73.1 REMARK 620 6 GLU B 176 O 92.1 126.3 148.9 137.0 76.4 REMARK 620 7 ASP B 177 OD1 76.6 116.8 82.8 134.1 93.1 76.5 REMARK 620 8 HOH B 433 O 100.0 83.4 132.1 79.7 82.7 66.9 143.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 168 OE1 REMARK 620 2 ASN B 170 OD1 68.9 REMARK 620 3 GLU B 176 OE1 140.5 73.5 REMARK 620 4 ASN B 192 OD1 65.7 134.3 151.8 REMARK 620 5 ASP B 193 O 131.9 139.4 73.5 79.3 REMARK 620 6 ASP B 193 OD1 75.0 85.1 90.1 88.5 72.0 REMARK 620 7 U8V E 2 O3 75.0 80.6 110.9 82.8 133.7 149.7 REMARK 620 8 U8V E 2 O4 135.4 129.3 79.3 82.8 65.5 137.4 70.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL C 116 O REMARK 620 2 ASN C 118 OD1 80.1 REMARK 620 3 GLU C 122 OE1 76.7 81.0 REMARK 620 4 GLU C 122 OE2 80.5 131.0 50.8 REMARK 620 5 GLU C 205 OE1 77.7 136.1 128.7 81.6 REMARK 620 6 GLU C 205 OE2 126.3 148.0 119.5 76.4 51.5 REMARK 620 7 HOH C 429 O 103.1 70.1 150.5 158.6 78.7 84.9 REMARK 620 8 HOH C 459 O 150.5 86.6 75.3 88.8 128.0 76.6 96.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 305 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 142 OD1 REMARK 620 2 ASP C 142 OD2 49.6 REMARK 620 3 GLU C 146 OE1 99.1 79.1 REMARK 620 4 GLU C 146 OE2 116.8 68.7 52.1 REMARK 620 5 ASN C 171 OD1 162.3 144.9 79.1 76.2 REMARK 620 6 GLU C 176 O 96.2 131.7 147.3 140.3 77.6 REMARK 620 7 ASP C 177 OD1 74.3 116.3 83.1 134.3 88.0 73.4 REMARK 620 8 HOH C 430 O 109.8 85.6 125.4 73.5 84.9 74.9 148.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 168 OE1 REMARK 620 2 ASN C 170 OD1 69.5 REMARK 620 3 GLU C 176 OE1 140.1 73.3 REMARK 620 4 ASN C 192 OD1 66.2 135.4 150.7 REMARK 620 5 ASP C 193 O 132.1 135.3 69.9 81.8 REMARK 620 6 ASP C 193 OD1 69.8 83.2 92.3 86.8 73.9 REMARK 620 7 U8V F 2 O3 78.2 74.4 105.2 91.3 139.6 145.8 REMARK 620 8 U8V F 2 O4 138.0 123.0 75.7 88.2 70.7 144.6 69.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ZRW RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS HAVE INDICATED THAT THE CORRECT SEQUENCE HAS BEEN DEPOSITED REMARK 999 AT THE NCBI: SEQUENCE XM_592701.4 DBREF 4ZRV A 79 208 UNP E1BHM0 E1BHM0_BOVIN 79 208 DBREF 4ZRV B 79 208 UNP E1BHM0 E1BHM0_BOVIN 79 208 DBREF 4ZRV C 79 208 UNP E1BHM0 E1BHM0_BOVIN 79 208 SEQADV 4ZRV ALA A 78 UNP E1BHM0 SEE REMARK 999 SEQADV 4ZRV THR A 174 UNP E1BHM0 ILE 174 VARIANT SEQADV 4ZRV ARG A 209 UNP E1BHM0 SEE REMARK 999 SEQADV 4ZRV LYS A 210 UNP E1BHM0 SEE REMARK 999 SEQADV 4ZRV ILE A 211 UNP E1BHM0 SEE REMARK 999 SEQADV 4ZRV ALA B 78 UNP E1BHM0 SEE REMARK 999 SEQADV 4ZRV THR B 174 UNP E1BHM0 ILE 174 VARIANT SEQADV 4ZRV ARG B 209 UNP E1BHM0 SEE REMARK 999 SEQADV 4ZRV LYS B 210 UNP E1BHM0 SEE REMARK 999 SEQADV 4ZRV ILE B 211 UNP E1BHM0 SEE REMARK 999 SEQADV 4ZRV ALA C 78 UNP E1BHM0 SEE REMARK 999 SEQADV 4ZRV THR C 174 UNP E1BHM0 ILE 174 VARIANT SEQADV 4ZRV ARG C 209 UNP E1BHM0 SEE REMARK 999 SEQADV 4ZRV LYS C 210 UNP E1BHM0 SEE REMARK 999 SEQADV 4ZRV ILE C 211 UNP E1BHM0 SEE REMARK 999 SEQRES 1 A 134 ALA CYS PRO LEU LYS TRP PHE HIS PHE GLN SER SER CYS SEQRES 2 A 134 TYR LEU PHE SER PRO ASP THR MET SER TRP ARG ALA SER SEQRES 3 A 134 LEU LYS ASN CYS SER SER MET GLY ALA HIS LEU VAL VAL SEQRES 4 A 134 ILE ASN THR GLN GLU GLU GLN GLU PHE LEU TYR TYR THR SEQRES 5 A 134 LYS PRO ARG LYS LYS GLU PHE TYR ILE GLY LEU THR ASP SEQRES 6 A 134 GLN VAL THR GLU GLY GLN TRP GLN TRP VAL ASP GLY THR SEQRES 7 A 134 PRO PHE THR LYS SER LEU SER PHE TRP ASP ALA GLY GLU SEQRES 8 A 134 PRO ASN ASN LEU VAL THR VAL GLU ASP CYS ALA THR ILE SEQRES 9 A 134 ARG ASP SER SER ASN PRO ARG GLN ASN TRP ASN ASP VAL SEQRES 10 A 134 PRO CYS PHE PHE ASN MET PHE ARG VAL CYS GLU MET PRO SEQRES 11 A 134 GLU ARG LYS ILE SEQRES 1 B 134 ALA CYS PRO LEU LYS TRP PHE HIS PHE GLN SER SER CYS SEQRES 2 B 134 TYR LEU PHE SER PRO ASP THR MET SER TRP ARG ALA SER SEQRES 3 B 134 LEU LYS ASN CYS SER SER MET GLY ALA HIS LEU VAL VAL SEQRES 4 B 134 ILE ASN THR GLN GLU GLU GLN GLU PHE LEU TYR TYR THR SEQRES 5 B 134 LYS PRO ARG LYS LYS GLU PHE TYR ILE GLY LEU THR ASP SEQRES 6 B 134 GLN VAL THR GLU GLY GLN TRP GLN TRP VAL ASP GLY THR SEQRES 7 B 134 PRO PHE THR LYS SER LEU SER PHE TRP ASP ALA GLY GLU SEQRES 8 B 134 PRO ASN ASN LEU VAL THR VAL GLU ASP CYS ALA THR ILE SEQRES 9 B 134 ARG ASP SER SER ASN PRO ARG GLN ASN TRP ASN ASP VAL SEQRES 10 B 134 PRO CYS PHE PHE ASN MET PHE ARG VAL CYS GLU MET PRO SEQRES 11 B 134 GLU ARG LYS ILE SEQRES 1 C 134 ALA CYS PRO LEU LYS TRP PHE HIS PHE GLN SER SER CYS SEQRES 2 C 134 TYR LEU PHE SER PRO ASP THR MET SER TRP ARG ALA SER SEQRES 3 C 134 LEU LYS ASN CYS SER SER MET GLY ALA HIS LEU VAL VAL SEQRES 4 C 134 ILE ASN THR GLN GLU GLU GLN GLU PHE LEU TYR TYR THR SEQRES 5 C 134 LYS PRO ARG LYS LYS GLU PHE TYR ILE GLY LEU THR ASP SEQRES 6 C 134 GLN VAL THR GLU GLY GLN TRP GLN TRP VAL ASP GLY THR SEQRES 7 C 134 PRO PHE THR LYS SER LEU SER PHE TRP ASP ALA GLY GLU SEQRES 8 C 134 PRO ASN ASN LEU VAL THR VAL GLU ASP CYS ALA THR ILE SEQRES 9 C 134 ARG ASP SER SER ASN PRO ARG GLN ASN TRP ASN ASP VAL SEQRES 10 C 134 PRO CYS PHE PHE ASN MET PHE ARG VAL CYS GLU MET PRO SEQRES 11 C 134 GLU ARG LYS ILE HET GLC D 1 11 HET U8V D 2 12 HET GLC E 1 11 HET U8V E 2 12 HET GLC F 1 11 HET U8V F 2 15 HET CA A 302 1 HET CA A 303 1 HET CA A 304 1 HET ACT A 305 8 HET CA B 302 1 HET CA B 303 1 HET CA B 304 1 HET ACT C 301 4 HET CA C 303 1 HET CA C 304 1 HET CA C 305 1 HET ACT C 306 4 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM U8V 6-O-BUTANOYL-ALPHA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 4 GLC 3(C6 H12 O6) FORMUL 4 U8V 3(C10 H18 O7) FORMUL 7 CA 9(CA 2+) FORMUL 10 ACT 3(C2 H3 O2 1-) FORMUL 19 HOH *372(H2 O) HELIX 1 AA1 SER A 99 MET A 110 1 12 HELIX 2 AA2 THR A 119 LYS A 130 1 12 HELIX 3 AA3 THR A 158 SER A 162 5 5 HELIX 4 AA4 ASN A 171 VAL A 175 5 5 HELIX 5 AA5 SER B 99 MET B 110 1 12 HELIX 6 AA6 THR B 119 LYS B 130 1 12 HELIX 7 AA7 ASN B 171 VAL B 175 5 5 HELIX 8 AA8 SER C 99 MET C 110 1 12 HELIX 9 AA9 THR C 119 LYS C 130 1 12 HELIX 10 AB1 THR C 158 SER C 162 5 5 HELIX 11 AB2 ASN C 171 THR C 174 5 4 SHEET 1 AA1 5 PHE A 84 PHE A 86 0 SHEET 2 AA1 5 SER A 89 PHE A 93 -1 O TYR A 91 N PHE A 84 SHEET 3 AA1 5 PHE A 201 PRO A 207 -1 O MET A 206 N CYS A 90 SHEET 4 AA1 5 PHE A 136 THR A 141 1 N TYR A 137 O PHE A 201 SHEET 5 AA1 5 GLN A 150 TRP A 151 -1 O GLN A 150 N THR A 141 SHEET 1 AA2 5 HIS A 113 LEU A 114 0 SHEET 2 AA2 5 PHE A 201 PRO A 207 -1 O GLU A 205 N HIS A 113 SHEET 3 AA2 5 PHE A 136 THR A 141 1 N TYR A 137 O PHE A 201 SHEET 4 AA2 5 CYS A 178 ILE A 181 -1 O ALA A 179 N LEU A 140 SHEET 5 AA2 5 TRP A 191 VAL A 194 -1 O ASN A 192 N THR A 180 SHEET 1 AA3 5 PHE B 84 PHE B 86 0 SHEET 2 AA3 5 SER B 89 PHE B 93 -1 O TYR B 91 N PHE B 84 SHEET 3 AA3 5 PHE B 201 PRO B 207 -1 O MET B 206 N CYS B 90 SHEET 4 AA3 5 PHE B 136 THR B 141 1 N TYR B 137 O PHE B 201 SHEET 5 AA3 5 GLN B 150 TRP B 151 -1 O GLN B 150 N THR B 141 SHEET 1 AA4 5 HIS B 113 LEU B 114 0 SHEET 2 AA4 5 PHE B 201 PRO B 207 -1 O GLU B 205 N HIS B 113 SHEET 3 AA4 5 PHE B 136 THR B 141 1 N TYR B 137 O PHE B 201 SHEET 4 AA4 5 CYS B 178 ILE B 181 -1 O ALA B 179 N LEU B 140 SHEET 5 AA4 5 TRP B 191 VAL B 194 -1 O VAL B 194 N CYS B 178 SHEET 1 AA5 5 PHE C 84 PHE C 86 0 SHEET 2 AA5 5 SER C 89 PHE C 93 -1 O TYR C 91 N PHE C 84 SHEET 3 AA5 5 PHE C 201 PRO C 207 -1 O MET C 206 N CYS C 90 SHEET 4 AA5 5 PHE C 136 THR C 141 1 N TYR C 137 O PHE C 201 SHEET 5 AA5 5 GLN C 150 TRP C 151 -1 O GLN C 150 N THR C 141 SHEET 1 AA6 5 HIS C 113 LEU C 114 0 SHEET 2 AA6 5 PHE C 201 PRO C 207 -1 O GLU C 205 N HIS C 113 SHEET 3 AA6 5 PHE C 136 THR C 141 1 N TYR C 137 O PHE C 201 SHEET 4 AA6 5 GLU C 176 ILE C 181 -1 O ALA C 179 N ILE C 138 SHEET 5 AA6 5 TRP C 191 PRO C 195 -1 O VAL C 194 N CYS C 178 SSBOND 1 CYS A 79 CYS A 90 1555 1555 2.03 SSBOND 2 CYS A 107 CYS A 204 1555 1555 2.05 SSBOND 3 CYS A 178 CYS A 196 1555 1555 2.03 SSBOND 4 CYS B 79 CYS B 90 1555 1555 2.05 SSBOND 5 CYS B 107 CYS B 204 1555 1555 2.05 SSBOND 6 CYS B 178 CYS B 196 1555 1555 2.04 SSBOND 7 CYS C 79 CYS C 90 1555 1555 2.04 SSBOND 8 CYS C 107 CYS C 204 1555 1555 2.03 SSBOND 9 CYS C 178 CYS C 196 1555 1555 2.04 LINK C1 GLC D 1 O1 U8V D 2 1555 1555 1.43 LINK C1 GLC E 1 O1 U8V E 2 1555 1555 1.44 LINK C1 GLC F 1 O1 U8V F 2 1555 1555 1.44 LINK O VAL A 116 CA CA A 303 1555 1555 2.37 LINK OD1 ASN A 118 CA CA A 303 1555 1555 2.45 LINK OE1 GLU A 122 CA CA A 303 1555 1555 2.70 LINK OE2 GLU A 122 CA CA A 303 1555 1555 2.37 LINK OD1 ASP A 142 CA CA A 304 1555 1555 2.66 LINK OD2 ASP A 142 CA CA A 304 1555 1555 2.55 LINK OE1 GLU A 146 CA CA A 304 1555 1555 2.40 LINK OE2 GLU A 146 CA CA A 304 1555 1555 2.51 LINK OE1 GLU A 168 CA CA A 302 1555 1555 2.51 LINK OD1 ASN A 170 CA CA A 302 1555 1555 2.37 LINK OD1 ASN A 171 CA CA A 304 1555 1555 2.55 LINK OE1 GLU A 176 CA CA A 302 1555 1555 2.44 LINK O GLU A 176 CA CA A 304 1555 1555 2.51 LINK OD1 ASP A 177 CA CA A 304 1555 1555 2.39 LINK OD1 ASN A 192 CA CA A 302 1555 1555 2.44 LINK O ASP A 193 CA CA A 302 1555 1555 2.49 LINK OD1 ASP A 193 CA CA A 302 1555 1555 2.36 LINK OE1 GLU A 205 CA CA A 303 1555 1555 2.69 LINK OE2 GLU A 205 CA CA A 303 1555 1555 2.35 LINK CA CA A 302 O3 U8V D 2 1555 1555 2.49 LINK CA CA A 302 O4 U8V D 2 1555 1555 2.44 LINK CA CA A 303 O HOH A 483 1555 1555 2.41 LINK CA CA A 303 O HOH A 502 1555 1555 2.40 LINK CA CA A 304 O HOH A 463 1555 1555 2.36 LINK O VAL B 116 CA CA B 303 1555 1555 2.35 LINK OD1 ASN B 118 CA CA B 303 1555 1555 2.43 LINK OE1 GLU B 122 CA CA B 303 1555 1555 2.75 LINK OE2 GLU B 122 CA CA B 303 1555 1555 2.44 LINK OD1 ASP B 142 CA CA B 304 1555 1555 2.59 LINK OD2 ASP B 142 CA CA B 304 1555 1555 2.64 LINK OE1 GLU B 146 CA CA B 304 1555 1555 2.43 LINK OE2 GLU B 146 CA CA B 304 1555 1555 2.53 LINK OE1 GLU B 168 CA CA B 302 1555 1555 2.53 LINK OD1 ASN B 170 CA CA B 302 1555 1555 2.41 LINK OD1 ASN B 171 CA CA B 304 1555 1555 2.52 LINK OE1 GLU B 176 CA CA B 302 1555 1555 2.40 LINK O GLU B 176 CA CA B 304 1555 1555 2.42 LINK OD1 ASP B 177 CA CA B 304 1555 1555 2.40 LINK OD1 ASN B 192 CA CA B 302 1555 1555 2.46 LINK O ASP B 193 CA CA B 302 1555 1555 2.45 LINK OD1 ASP B 193 CA CA B 302 1555 1555 2.28 LINK OE1 GLU B 205 CA CA B 303 1555 1555 2.59 LINK OE2 GLU B 205 CA CA B 303 1555 1555 2.41 LINK CA CA B 302 O3 U8V E 2 1555 1555 2.44 LINK CA CA B 302 O4 U8V E 2 1555 1555 2.52 LINK CA CA B 303 O HOH B 484 1555 1555 2.37 LINK CA CA B 303 O HOH B 492 1555 1555 2.44 LINK CA CA B 304 O HOH B 433 1555 1555 2.45 LINK O VAL C 116 CA CA C 304 1555 1555 2.31 LINK OD1 ASN C 118 CA CA C 304 1555 1555 2.39 LINK OE1 GLU C 122 CA CA C 304 1555 1555 2.69 LINK OE2 GLU C 122 CA CA C 304 1555 1555 2.38 LINK OD1 ASP C 142 CA CA C 305 1555 1555 2.62 LINK OD2 ASP C 142 CA CA C 305 1555 1555 2.61 LINK OE1 GLU C 146 CA CA C 305 1555 1555 2.45 LINK OE2 GLU C 146 CA CA C 305 1555 1555 2.53 LINK OE1 GLU C 168 CA CA C 303 1555 1555 2.68 LINK OD1 ASN C 170 CA CA C 303 1555 1555 2.48 LINK OD1 ASN C 171 CA CA C 305 1555 1555 2.53 LINK OE1 GLU C 176 CA CA C 303 1555 1555 2.34 LINK O GLU C 176 CA CA C 305 1555 1555 2.45 LINK OD1 ASP C 177 CA CA C 305 1555 1555 2.43 LINK OD1 ASN C 192 CA CA C 303 1555 1555 2.35 LINK O ASP C 193 CA CA C 303 1555 1555 2.50 LINK OD1 ASP C 193 CA CA C 303 1555 1555 2.48 LINK OE1 GLU C 205 CA CA C 304 1555 1555 2.65 LINK OE2 GLU C 205 CA CA C 304 1555 1555 2.42 LINK CA CA C 303 O3 U8V F 2 1555 1555 2.55 LINK CA CA C 303 O4 U8V F 2 1555 1555 2.51 LINK CA CA C 304 O HOH C 429 1555 1555 2.34 LINK CA CA C 304 O HOH C 459 1555 1555 2.34 LINK CA CA C 305 O HOH C 430 1555 1555 2.38 CISPEP 1 GLU A 168 PRO A 169 0 -4.23 CISPEP 2 GLU B 168 PRO B 169 0 -5.96 CISPEP 3 GLU C 168 PRO C 169 0 -2.90 CRYST1 66.464 46.676 77.920 90.00 101.16 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015046 0.000000 0.002969 0.00000 SCALE2 0.000000 0.021424 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013081 0.00000