data_4ZRW # _entry.id 4ZRW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4ZRW WWPDB D_1000209228 # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 4ZRV _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4ZRW _pdbx_database_status.recvd_initial_deposition_date 2015-05-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Feinberg, H.' 1 'Rambaruth, N.D.S.' 2 'Taylor, M.E.' 3 'Drickamer, K.' 4 'Weis, W.I.' 5 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Biol.Chem. _citation.journal_id_ASTM JBCHA3 _citation.journal_id_CSD 0071 _citation.journal_id_ISSN 1083-351X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 291 _citation.language ? _citation.page_first 21222 _citation.page_last 21233 _citation.title ;Binding Sites for Acylated Trehalose Analogs of Glycolipid Ligands on an Extended Carbohydrate Recognition Domain of the Macrophage Receptor Mincle. ; _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1074/jbc.M116.749515 _citation.pdbx_database_id_PubMed 27542410 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Feinberg, H.' 1 ? primary 'Rambaruth, N.D.' 2 ? primary 'Jegouzo, S.A.' 3 ? primary 'Jacobsen, K.M.' 4 ? primary 'Djurhuus, R.' 5 ? primary 'Poulsen, T.B.' 6 ? primary 'Weis, W.I.' 7 ? primary 'Taylor, M.E.' 8 ? primary 'Drickamer, K.' 9 ? # _cell.length_a 97.800 _cell.length_b 97.800 _cell.length_c 45.200 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 4ZRW _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.entry_id 4ZRW _symmetry.Int_Tables_number 152 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'mincle protein' 17299.396 1 ? ? 'unp residues 64-208' ? 2 branched man 'alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose' 342.297 1 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 3 ? ? ? ? 4 water nat water 18.015 56 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name trehalose # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AELSCYNDGSGSVKNCCPLKWFHFQSSCYLFSPDTMSWRASLKNCSSMGAHLVVINTQEEQEFLYYTKPRKKEFYIGLTD QVTEGQWQWVDGTPFTKSLSFWDAGEPNNLVTVEDCATIRDSSNPRQNWNDVPCFFNMFRVCEMPERKI ; _entity_poly.pdbx_seq_one_letter_code_can ;AELSCYNDGSGSVKNCCPLKWFHFQSSCYLFSPDTMSWRASLKNCSSMGAHLVVINTQEEQEFLYYTKPRKKEFYIGLTD QVTEGQWQWVDGTPFTKSLSFWDAGEPNNLVTVEDCATIRDSSNPRQNWNDVPCFFNMFRVCEMPERKI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 GLU n 1 3 LEU n 1 4 SER n 1 5 CYS n 1 6 TYR n 1 7 ASN n 1 8 ASP n 1 9 GLY n 1 10 SER n 1 11 GLY n 1 12 SER n 1 13 VAL n 1 14 LYS n 1 15 ASN n 1 16 CYS n 1 17 CYS n 1 18 PRO n 1 19 LEU n 1 20 LYS n 1 21 TRP n 1 22 PHE n 1 23 HIS n 1 24 PHE n 1 25 GLN n 1 26 SER n 1 27 SER n 1 28 CYS n 1 29 TYR n 1 30 LEU n 1 31 PHE n 1 32 SER n 1 33 PRO n 1 34 ASP n 1 35 THR n 1 36 MET n 1 37 SER n 1 38 TRP n 1 39 ARG n 1 40 ALA n 1 41 SER n 1 42 LEU n 1 43 LYS n 1 44 ASN n 1 45 CYS n 1 46 SER n 1 47 SER n 1 48 MET n 1 49 GLY n 1 50 ALA n 1 51 HIS n 1 52 LEU n 1 53 VAL n 1 54 VAL n 1 55 ILE n 1 56 ASN n 1 57 THR n 1 58 GLN n 1 59 GLU n 1 60 GLU n 1 61 GLN n 1 62 GLU n 1 63 PHE n 1 64 LEU n 1 65 TYR n 1 66 TYR n 1 67 THR n 1 68 LYS n 1 69 PRO n 1 70 ARG n 1 71 LYS n 1 72 LYS n 1 73 GLU n 1 74 PHE n 1 75 TYR n 1 76 ILE n 1 77 GLY n 1 78 LEU n 1 79 THR n 1 80 ASP n 1 81 GLN n 1 82 VAL n 1 83 THR n 1 84 GLU n 1 85 GLY n 1 86 GLN n 1 87 TRP n 1 88 GLN n 1 89 TRP n 1 90 VAL n 1 91 ASP n 1 92 GLY n 1 93 THR n 1 94 PRO n 1 95 PHE n 1 96 THR n 1 97 LYS n 1 98 SER n 1 99 LEU n 1 100 SER n 1 101 PHE n 1 102 TRP n 1 103 ASP n 1 104 ALA n 1 105 GLY n 1 106 GLU n 1 107 PRO n 1 108 ASN n 1 109 ASN n 1 110 LEU n 1 111 VAL n 1 112 THR n 1 113 VAL n 1 114 GLU n 1 115 ASP n 1 116 CYS n 1 117 ALA n 1 118 THR n 1 119 ILE n 1 120 ARG n 1 121 ASP n 1 122 SER n 1 123 SER n 1 124 ASN n 1 125 PRO n 1 126 ARG n 1 127 GLN n 1 128 ASN n 1 129 TRP n 1 130 ASN n 1 131 ASP n 1 132 VAL n 1 133 PRO n 1 134 CYS n 1 135 PHE n 1 136 PHE n 1 137 ASN n 1 138 MET n 1 139 PHE n 1 140 ARG n 1 141 VAL n 1 142 CYS n 1 143 GLU n 1 144 MET n 1 145 PRO n 1 146 GLU n 1 147 ARG n 1 148 LYS n 1 149 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 149 _entity_src_gen.gene_src_common_name Bovine _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene CLEC4E _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bos taurus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9913 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code E1BHM0_BOVIN _struct_ref.pdbx_db_accession E1BHM0 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ELSCYNDGSGSVKNCCPLKWFHFQSSCYLFSPDTMSWRASLKNCSSMGAHLVVINTQEEQEFLYYTKPRKKEFYIGLTDQ VTEGQWQWVDGTPFTKSLSFWDAGEPNNLVIVEDCATIRDSSNPRQNWNDVPCFFNMFRVCEMPE ; _struct_ref.pdbx_align_begin 64 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4ZRW _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 146 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession E1BHM0 _struct_ref_seq.db_align_beg 64 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 208 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 64 _struct_ref_seq.pdbx_auth_seq_align_end 208 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4ZRW ALA A 1 ? UNP E1BHM0 ? ? 'expression tag' 63 1 1 4ZRW THR A 112 ? UNP E1BHM0 ILE 174 variant 174 2 1 4ZRW ARG A 147 ? UNP E1BHM0 ? ? 'expression tag' 209 3 1 4ZRW LYS A 148 ? UNP E1BHM0 ? ? 'expression tag' 210 4 1 4ZRW ILE A 149 ? UNP E1BHM0 ? ? 'expression tag' 211 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLC 'D-saccharide, alpha linking' . alpha-D-glucopyranose ? 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4ZRW _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.61 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 65.90 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 290 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;protein solution: 7.2 mg/mL mincle, 5 mM CaCl2, 10 mM Tris (pH 8.0), 25 mM NaCl and 30 mM trehalose. Reservoir solution: 2% Peg 3.35K, 0.2 MgCl2, 0.1 M Tris pH=8.5 ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-10-18 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.03320 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 23-ID-B' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.03320 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 23-ID-B _diffrn_source.pdbx_synchrotron_site APS # _reflns.d_resolution_high 2.600 _reflns.d_resolution_low 48.900 _reflns.pdbx_number_measured_all 33591 _reflns.number_obs 7737 _reflns.pdbx_scaling_rejects 8 _reflns.pdbx_Rmerge_I_obs 0.102 _reflns.pdbx_netI_over_sigmaI 9.700 _reflns.pdbx_redundancy 4.300 _reflns.percent_possible_obs 98.600 _reflns.pdbx_Rpim_I_all 0.054 _reflns.pdbx_CC_half 0.994 _reflns.B_iso_Wilson_estimate 40.870 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4ZRW _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? # loop_ _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.pdbx_rejects _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.meanI_over_sigI_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_CC_half 1 1 2.600 2.720 ? 3715 ? 0 0.481 2.300 ? ? 4.000 ? ? ? 926 ? ? ? ? 97.400 ? 0.271 0.759 1 2 9.010 48.900 ? 872 ? 0 0.049 20.100 ? ? 4.200 ? ? ? 208 ? ? ? ? 98.600 ? 0.026 0.997 # _refine.entry_id 4ZRW _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 2.6000 _refine.ls_d_res_low 42.3490 _refine.pdbx_ls_sigma_F 1.940 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.0700 _refine.ls_number_reflns_obs 7731 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details ? _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1546 _refine.ls_R_factor_R_work 0.1521 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2075 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.6300 _refine.ls_number_reflns_R_free 358 _refine.ls_number_reflns_R_work 7373 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 43.1986 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.2400 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 111.610 _refine.B_iso_min 25.150 _refine.pdbx_overall_phase_error 18.2500 _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.6000 _refine_hist.d_res_low 42.3490 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.number_atoms_solvent 56 _refine_hist.number_atoms_total 1276 _refine_hist.pdbx_number_residues_total 146 _refine_hist.pdbx_B_iso_mean_ligand 40.48 _refine_hist.pdbx_B_iso_mean_solvent 40.51 _refine_hist.pdbx_number_atoms_protein 1194 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' f_bond_d 1279 0.015 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 1702 1.158 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 180 0.044 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 216 0.005 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 459 14.414 ? ? ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.pdbx_refine_id 2.6002 2.9763 3 98.0000 2409 . 0.2168 0.2907 . 117 . 2526 . 'X-RAY DIFFRACTION' 2.9763 3.7495 3 98.0000 2434 . 0.1654 0.2520 . 120 . 2554 . 'X-RAY DIFFRACTION' 3.7495 42.3542 3 99.0000 2530 . 0.1237 0.1545 . 121 . 2651 . 'X-RAY DIFFRACTION' # _struct.entry_id 4ZRW _struct.title 'Structure of cow mincle complexed with trehalose' _struct.pdbx_descriptor 'Uncharacterized protein' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4ZRW _struct_keywords.text 'glycobiology, carbohydrate-binding protein, C-type lectin, complex, SUGAR BINDING PROTEIN' _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 37 ? MET A 48 ? SER A 99 MET A 110 1 ? 12 HELX_P HELX_P2 AA2 THR A 57 ? LYS A 68 ? THR A 119 LYS A 130 1 ? 12 HELX_P HELX_P3 AA3 THR A 96 ? SER A 100 ? THR A 158 SER A 162 5 ? 5 HELX_P HELX_P4 AA4 ASN A 109 ? VAL A 113 ? ASN A 171 VAL A 175 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 5 SG ? ? ? 1_555 A CYS 16 SG ? ? A CYS 67 A CYS 78 1_555 ? ? ? ? ? ? ? 2.042 ? ? disulf2 disulf ? ? A CYS 17 SG ? ? ? 1_555 A CYS 28 SG ? ? A CYS 79 A CYS 90 1_555 ? ? ? ? ? ? ? 2.026 ? ? disulf3 disulf ? ? A CYS 45 SG ? ? ? 1_555 A CYS 142 SG ? ? A CYS 107 A CYS 204 1_555 ? ? ? ? ? ? ? 2.077 ? ? disulf4 disulf ? ? A CYS 116 SG ? ? ? 1_555 A CYS 134 SG ? ? A CYS 178 A CYS 196 1_555 ? ? ? ? ? ? ? 2.028 ? ? covale1 covale both ? B GLC . C1 ? ? ? 1_555 B GLC . O1 ? ? B GLC 1 B GLC 2 1_555 ? ? ? ? ? ? ? 1.434 sing ? metalc1 metalc ? ? A VAL 54 O ? ? ? 1_555 D CA . CA ? ? A VAL 116 A CA 303 1_555 ? ? ? ? ? ? ? 2.383 ? ? metalc2 metalc ? ? A ASN 56 OD1 ? ? ? 1_555 D CA . CA ? ? A ASN 118 A CA 303 1_555 ? ? ? ? ? ? ? 2.375 ? ? metalc3 metalc ? ? A GLU 60 OE1 ? ? ? 1_555 D CA . CA ? ? A GLU 122 A CA 303 1_555 ? ? ? ? ? ? ? 2.887 ? ? metalc4 metalc ? ? A GLU 60 OE2 ? ? ? 1_555 D CA . CA ? ? A GLU 122 A CA 303 1_555 ? ? ? ? ? ? ? 2.426 ? ? metalc5 metalc ? ? A ASP 80 OD1 ? ? ? 1_555 E CA . CA ? ? A ASP 142 A CA 304 1_555 ? ? ? ? ? ? ? 2.575 ? ? metalc6 metalc ? ? A ASP 80 OD2 ? ? ? 1_555 E CA . CA ? ? A ASP 142 A CA 304 1_555 ? ? ? ? ? ? ? 2.585 ? ? metalc7 metalc ? ? A GLU 84 OE1 ? ? ? 1_555 E CA . CA ? ? A GLU 146 A CA 304 1_555 ? ? ? ? ? ? ? 2.571 ? ? metalc8 metalc ? ? A GLU 84 OE2 ? ? ? 1_555 E CA . CA ? ? A GLU 146 A CA 304 1_555 ? ? ? ? ? ? ? 2.578 ? ? metalc9 metalc ? ? A GLU 106 OE1 ? ? ? 1_555 C CA . CA ? ? A GLU 168 A CA 302 1_555 ? ? ? ? ? ? ? 2.483 ? ? metalc10 metalc ? ? A ASN 108 OD1 ? ? ? 1_555 C CA . CA ? ? A ASN 170 A CA 302 1_555 ? ? ? ? ? ? ? 2.410 ? ? metalc11 metalc ? ? A ASN 109 OD1 ? ? ? 1_555 E CA . CA ? ? A ASN 171 A CA 304 1_555 ? ? ? ? ? ? ? 2.537 ? ? metalc12 metalc ? ? A GLU 114 OE1 ? ? ? 1_555 C CA . CA ? ? A GLU 176 A CA 302 1_555 ? ? ? ? ? ? ? 2.483 ? ? metalc13 metalc ? ? A GLU 114 O ? ? ? 1_555 E CA . CA ? ? A GLU 176 A CA 304 1_555 ? ? ? ? ? ? ? 2.440 ? ? metalc14 metalc ? ? A ASP 115 OD1 ? ? ? 1_555 E CA . CA ? ? A ASP 177 A CA 304 1_555 ? ? ? ? ? ? ? 2.366 ? ? metalc15 metalc ? ? A ASN 130 OD1 ? ? ? 1_555 C CA . CA ? ? A ASN 192 A CA 302 1_555 ? ? ? ? ? ? ? 2.400 ? ? metalc16 metalc ? ? A ASP 131 O ? ? ? 1_555 C CA . CA ? ? A ASP 193 A CA 302 1_555 ? ? ? ? ? ? ? 2.595 ? ? metalc17 metalc ? ? A ASP 131 OD1 ? ? ? 1_555 C CA . CA ? ? A ASP 193 A CA 302 1_555 ? ? ? ? ? ? ? 2.219 ? ? metalc18 metalc ? ? A GLU 143 OE1 ? ? ? 1_555 D CA . CA ? ? A GLU 205 A CA 303 1_555 ? ? ? ? ? ? ? 2.571 ? ? metalc19 metalc ? ? A GLU 143 OE2 ? ? ? 1_555 D CA . CA ? ? A GLU 205 A CA 303 1_555 ? ? ? ? ? ? ? 2.442 ? ? metalc20 metalc ? ? C CA . CA ? ? ? 1_555 B GLC . O3 ? ? A CA 302 B GLC 2 1_555 ? ? ? ? ? ? ? 2.535 ? ? metalc21 metalc ? ? C CA . CA ? ? ? 1_555 B GLC . O4 ? ? A CA 302 B GLC 2 1_555 ? ? ? ? ? ? ? 2.367 ? ? metalc22 metalc ? ? D CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 303 A HOH 432 1_555 ? ? ? ? ? ? ? 2.336 ? ? metalc23 metalc ? ? D CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 303 A HOH 434 1_555 ? ? ? ? ? ? ? 2.351 ? ? metalc24 metalc ? ? E CA . CA ? ? ? 1_555 F HOH . O ? ? A CA 304 A HOH 419 1_555 ? ? ? ? ? ? ? 2.378 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLU _struct_mon_prot_cis.label_seq_id 106 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLU _struct_mon_prot_cis.auth_seq_id 168 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 107 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 169 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -1.86 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 5 ? AA3 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? parallel AA2 4 5 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 3 ? TYR A 6 ? LEU A 65 TYR A 68 AA1 2 ASN A 15 ? PRO A 18 ? ASN A 77 PRO A 80 AA2 1 PHE A 22 ? PHE A 24 ? PHE A 84 PHE A 86 AA2 2 SER A 27 ? PHE A 31 ? SER A 89 PHE A 93 AA2 3 PHE A 139 ? PRO A 145 ? PHE A 201 PRO A 207 AA2 4 PHE A 74 ? THR A 79 ? PHE A 136 THR A 141 AA2 5 GLN A 88 ? TRP A 89 ? GLN A 150 TRP A 151 AA3 1 HIS A 51 ? LEU A 52 ? HIS A 113 LEU A 114 AA3 2 PHE A 139 ? PRO A 145 ? PHE A 201 PRO A 207 AA3 3 PHE A 74 ? THR A 79 ? PHE A 136 THR A 141 AA3 4 CYS A 116 ? ILE A 119 ? CYS A 178 ILE A 181 AA3 5 TRP A 129 ? VAL A 132 ? TRP A 191 VAL A 194 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N SER A 4 ? N SER A 66 O CYS A 17 ? O CYS A 79 AA2 1 2 N PHE A 22 ? N PHE A 84 O TYR A 29 ? O TYR A 91 AA2 2 3 N CYS A 28 ? N CYS A 90 O MET A 144 ? O MET A 206 AA2 3 4 O PHE A 139 ? O PHE A 201 N TYR A 75 ? N TYR A 137 AA2 4 5 N THR A 79 ? N THR A 141 O GLN A 88 ? O GLN A 150 AA3 1 2 N HIS A 51 ? N HIS A 113 O GLU A 143 ? O GLU A 205 AA3 2 3 O PHE A 139 ? O PHE A 201 N TYR A 75 ? N TYR A 137 AA3 3 4 N LEU A 78 ? N LEU A 140 O ALA A 117 ? O ALA A 179 AA3 4 5 N CYS A 116 ? N CYS A 178 O VAL A 132 ? O VAL A 194 # _atom_sites.entry_id 4ZRW _atom_sites.fract_transf_matrix[1][1] 0.010225 _atom_sites.fract_transf_matrix[1][2] 0.005903 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011807 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022124 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CA N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 63 63 ALA ALA A . n A 1 2 GLU 2 64 64 GLU GLU A . n A 1 3 LEU 3 65 65 LEU LEU A . n A 1 4 SER 4 66 66 SER SER A . n A 1 5 CYS 5 67 67 CYS CYS A . n A 1 6 TYR 6 68 68 TYR TYR A . n A 1 7 ASN 7 69 69 ASN ASN A . n A 1 8 ASP 8 70 70 ASP ASP A . n A 1 9 GLY 9 71 ? ? ? A . n A 1 10 SER 10 72 ? ? ? A . n A 1 11 GLY 11 73 73 GLY GLY A . n A 1 12 SER 12 74 74 SER SER A . n A 1 13 VAL 13 75 75 VAL VAL A . n A 1 14 LYS 14 76 76 LYS LYS A . n A 1 15 ASN 15 77 77 ASN ASN A . n A 1 16 CYS 16 78 78 CYS CYS A . n A 1 17 CYS 17 79 79 CYS CYS A . n A 1 18 PRO 18 80 80 PRO PRO A . n A 1 19 LEU 19 81 81 LEU LEU A . n A 1 20 LYS 20 82 82 LYS LYS A . n A 1 21 TRP 21 83 83 TRP TRP A . n A 1 22 PHE 22 84 84 PHE PHE A . n A 1 23 HIS 23 85 85 HIS HIS A . n A 1 24 PHE 24 86 86 PHE PHE A . n A 1 25 GLN 25 87 87 GLN GLN A . n A 1 26 SER 26 88 88 SER SER A . n A 1 27 SER 27 89 89 SER SER A . n A 1 28 CYS 28 90 90 CYS CYS A . n A 1 29 TYR 29 91 91 TYR TYR A . n A 1 30 LEU 30 92 92 LEU LEU A . n A 1 31 PHE 31 93 93 PHE PHE A . n A 1 32 SER 32 94 94 SER SER A . n A 1 33 PRO 33 95 95 PRO PRO A . n A 1 34 ASP 34 96 96 ASP ASP A . n A 1 35 THR 35 97 97 THR THR A . n A 1 36 MET 36 98 98 MET MET A . n A 1 37 SER 37 99 99 SER SER A . n A 1 38 TRP 38 100 100 TRP TRP A . n A 1 39 ARG 39 101 101 ARG ARG A . n A 1 40 ALA 40 102 102 ALA ALA A . n A 1 41 SER 41 103 103 SER SER A . n A 1 42 LEU 42 104 104 LEU LEU A . n A 1 43 LYS 43 105 105 LYS LYS A . n A 1 44 ASN 44 106 106 ASN ASN A . n A 1 45 CYS 45 107 107 CYS CYS A . n A 1 46 SER 46 108 108 SER SER A . n A 1 47 SER 47 109 109 SER SER A . n A 1 48 MET 48 110 110 MET MET A . n A 1 49 GLY 49 111 111 GLY GLY A . n A 1 50 ALA 50 112 112 ALA ALA A . n A 1 51 HIS 51 113 113 HIS HIS A . n A 1 52 LEU 52 114 114 LEU LEU A . n A 1 53 VAL 53 115 115 VAL VAL A . n A 1 54 VAL 54 116 116 VAL VAL A . n A 1 55 ILE 55 117 117 ILE ILE A . n A 1 56 ASN 56 118 118 ASN ASN A . n A 1 57 THR 57 119 119 THR THR A . n A 1 58 GLN 58 120 120 GLN GLN A . n A 1 59 GLU 59 121 121 GLU GLU A . n A 1 60 GLU 60 122 122 GLU GLU A . n A 1 61 GLN 61 123 123 GLN GLN A . n A 1 62 GLU 62 124 124 GLU GLU A . n A 1 63 PHE 63 125 125 PHE PHE A . n A 1 64 LEU 64 126 126 LEU LEU A . n A 1 65 TYR 65 127 127 TYR TYR A . n A 1 66 TYR 66 128 128 TYR TYR A . n A 1 67 THR 67 129 129 THR THR A . n A 1 68 LYS 68 130 130 LYS LYS A . n A 1 69 PRO 69 131 131 PRO PRO A . n A 1 70 ARG 70 132 132 ARG ARG A . n A 1 71 LYS 71 133 133 LYS LYS A . n A 1 72 LYS 72 134 134 LYS LYS A . n A 1 73 GLU 73 135 135 GLU GLU A . n A 1 74 PHE 74 136 136 PHE PHE A . n A 1 75 TYR 75 137 137 TYR TYR A . n A 1 76 ILE 76 138 138 ILE ILE A . n A 1 77 GLY 77 139 139 GLY GLY A . n A 1 78 LEU 78 140 140 LEU LEU A . n A 1 79 THR 79 141 141 THR THR A . n A 1 80 ASP 80 142 142 ASP ASP A . n A 1 81 GLN 81 143 143 GLN GLN A . n A 1 82 VAL 82 144 144 VAL VAL A . n A 1 83 THR 83 145 145 THR THR A . n A 1 84 GLU 84 146 146 GLU GLU A . n A 1 85 GLY 85 147 147 GLY GLY A . n A 1 86 GLN 86 148 148 GLN GLN A . n A 1 87 TRP 87 149 149 TRP TRP A . n A 1 88 GLN 88 150 150 GLN GLN A . n A 1 89 TRP 89 151 151 TRP TRP A . n A 1 90 VAL 90 152 152 VAL VAL A . n A 1 91 ASP 91 153 153 ASP ASP A . n A 1 92 GLY 92 154 154 GLY GLY A . n A 1 93 THR 93 155 155 THR THR A . n A 1 94 PRO 94 156 156 PRO PRO A . n A 1 95 PHE 95 157 157 PHE PHE A . n A 1 96 THR 96 158 158 THR THR A . n A 1 97 LYS 97 159 159 LYS LYS A . n A 1 98 SER 98 160 160 SER SER A . n A 1 99 LEU 99 161 161 LEU LEU A . n A 1 100 SER 100 162 162 SER SER A . n A 1 101 PHE 101 163 163 PHE PHE A . n A 1 102 TRP 102 164 164 TRP TRP A . n A 1 103 ASP 103 165 165 ASP ASP A . n A 1 104 ALA 104 166 166 ALA ALA A . n A 1 105 GLY 105 167 167 GLY GLY A . n A 1 106 GLU 106 168 168 GLU GLU A . n A 1 107 PRO 107 169 169 PRO PRO A . n A 1 108 ASN 108 170 170 ASN ASN A . n A 1 109 ASN 109 171 171 ASN ASN A . n A 1 110 LEU 110 172 172 LEU LEU A . n A 1 111 VAL 111 173 173 VAL VAL A . n A 1 112 THR 112 174 174 THR THR A . n A 1 113 VAL 113 175 175 VAL VAL A . n A 1 114 GLU 114 176 176 GLU GLU A . n A 1 115 ASP 115 177 177 ASP ASP A . n A 1 116 CYS 116 178 178 CYS CYS A . n A 1 117 ALA 117 179 179 ALA ALA A . n A 1 118 THR 118 180 180 THR THR A . n A 1 119 ILE 119 181 181 ILE ILE A . n A 1 120 ARG 120 182 182 ARG ARG A . n A 1 121 ASP 121 183 183 ASP ASP A . n A 1 122 SER 122 184 184 SER SER A . n A 1 123 SER 123 185 185 SER SER A . n A 1 124 ASN 124 186 186 ASN ASN A . n A 1 125 PRO 125 187 187 PRO PRO A . n A 1 126 ARG 126 188 188 ARG ARG A . n A 1 127 GLN 127 189 189 GLN GLN A . n A 1 128 ASN 128 190 190 ASN ASN A . n A 1 129 TRP 129 191 191 TRP TRP A . n A 1 130 ASN 130 192 192 ASN ASN A . n A 1 131 ASP 131 193 193 ASP ASP A . n A 1 132 VAL 132 194 194 VAL VAL A . n A 1 133 PRO 133 195 195 PRO PRO A . n A 1 134 CYS 134 196 196 CYS CYS A . n A 1 135 PHE 135 197 197 PHE PHE A . n A 1 136 PHE 136 198 198 PHE PHE A . n A 1 137 ASN 137 199 199 ASN ASN A . n A 1 138 MET 138 200 200 MET MET A . n A 1 139 PHE 139 201 201 PHE PHE A . n A 1 140 ARG 140 202 202 ARG ARG A . n A 1 141 VAL 141 203 203 VAL VAL A . n A 1 142 CYS 142 204 204 CYS CYS A . n A 1 143 GLU 143 205 205 GLU GLU A . n A 1 144 MET 144 206 206 MET MET A . n A 1 145 PRO 145 207 207 PRO PRO A . n A 1 146 GLU 146 208 208 GLU GLU A . n A 1 147 ARG 147 209 209 ARG ARG A . n A 1 148 LYS 148 210 210 LYS LYS A . n A 1 149 ILE 149 211 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA 1 302 400 CA CA A . D 3 CA 1 303 401 CA CA A . E 3 CA 1 304 402 CA CA A . F 4 HOH 1 401 51 HOH HOH A . F 4 HOH 2 402 49 HOH HOH A . F 4 HOH 3 403 14 HOH HOH A . F 4 HOH 4 404 38 HOH HOH A . F 4 HOH 5 405 56 HOH HOH A . F 4 HOH 6 406 26 HOH HOH A . F 4 HOH 7 407 46 HOH HOH A . F 4 HOH 8 408 43 HOH HOH A . F 4 HOH 9 409 8 HOH HOH A . F 4 HOH 10 410 15 HOH HOH A . F 4 HOH 11 411 29 HOH HOH A . F 4 HOH 12 412 52 HOH HOH A . F 4 HOH 13 413 27 HOH HOH A . F 4 HOH 14 414 31 HOH HOH A . F 4 HOH 15 415 34 HOH HOH A . F 4 HOH 16 416 9 HOH HOH A . F 4 HOH 17 417 45 HOH HOH A . F 4 HOH 18 418 18 HOH HOH A . F 4 HOH 19 419 1 HOH HOH A . F 4 HOH 20 420 35 HOH HOH A . F 4 HOH 21 421 32 HOH HOH A . F 4 HOH 22 422 7 HOH HOH A . F 4 HOH 23 423 24 HOH HOH A . F 4 HOH 24 424 28 HOH HOH A . F 4 HOH 25 425 20 HOH HOH A . F 4 HOH 26 426 40 HOH HOH A . F 4 HOH 27 427 22 HOH HOH A . F 4 HOH 28 428 30 HOH HOH A . F 4 HOH 29 429 12 HOH HOH A . F 4 HOH 30 430 39 HOH HOH A . F 4 HOH 31 431 6 HOH HOH A . F 4 HOH 32 432 3 HOH HOH A . F 4 HOH 33 433 5 HOH HOH A . F 4 HOH 34 434 2 HOH HOH A . F 4 HOH 35 435 47 HOH HOH A . F 4 HOH 36 436 10 HOH HOH A . F 4 HOH 37 437 50 HOH HOH A . F 4 HOH 38 438 16 HOH HOH A . F 4 HOH 39 439 48 HOH HOH A . F 4 HOH 40 440 37 HOH HOH A . F 4 HOH 41 441 36 HOH HOH A . F 4 HOH 42 442 54 HOH HOH A . F 4 HOH 43 443 55 HOH HOH A . F 4 HOH 44 444 53 HOH HOH A . F 4 HOH 45 445 13 HOH HOH A . F 4 HOH 46 446 44 HOH HOH A . F 4 HOH 47 447 33 HOH HOH A . F 4 HOH 48 448 4 HOH HOH A . F 4 HOH 49 449 11 HOH HOH A . F 4 HOH 50 450 17 HOH HOH A . F 4 HOH 51 451 23 HOH HOH A . F 4 HOH 52 452 41 HOH HOH A . F 4 HOH 53 453 21 HOH HOH A . F 4 HOH 54 454 19 HOH HOH A . F 4 HOH 55 455 42 HOH HOH A . F 4 HOH 56 456 25 HOH HOH A . # _pdbx_molecule_features.prd_id PRD_900006 _pdbx_molecule_features.name trehalose _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class Nutrient _pdbx_molecule_features.details 'oligosaccharide with reducing-end-to-reducing-end glycosidic bond' # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_900006 _pdbx_molecule.asym_id B # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A VAL 54 ? A VAL 116 ? 1_555 CA ? D CA . ? A CA 303 ? 1_555 OD1 ? A ASN 56 ? A ASN 118 ? 1_555 77.6 ? 2 O ? A VAL 54 ? A VAL 116 ? 1_555 CA ? D CA . ? A CA 303 ? 1_555 OE1 ? A GLU 60 ? A GLU 122 ? 1_555 77.0 ? 3 OD1 ? A ASN 56 ? A ASN 118 ? 1_555 CA ? D CA . ? A CA 303 ? 1_555 OE1 ? A GLU 60 ? A GLU 122 ? 1_555 76.5 ? 4 O ? A VAL 54 ? A VAL 116 ? 1_555 CA ? D CA . ? A CA 303 ? 1_555 OE2 ? A GLU 60 ? A GLU 122 ? 1_555 85.9 ? 5 OD1 ? A ASN 56 ? A ASN 118 ? 1_555 CA ? D CA . ? A CA 303 ? 1_555 OE2 ? A GLU 60 ? A GLU 122 ? 1_555 124.8 ? 6 OE1 ? A GLU 60 ? A GLU 122 ? 1_555 CA ? D CA . ? A CA 303 ? 1_555 OE2 ? A GLU 60 ? A GLU 122 ? 1_555 48.4 ? 7 O ? A VAL 54 ? A VAL 116 ? 1_555 CA ? D CA . ? A CA 303 ? 1_555 OE1 ? A GLU 143 ? A GLU 205 ? 1_555 80.6 ? 8 OD1 ? A ASN 56 ? A ASN 118 ? 1_555 CA ? D CA . ? A CA 303 ? 1_555 OE1 ? A GLU 143 ? A GLU 205 ? 1_555 138.7 ? 9 OE1 ? A GLU 60 ? A GLU 122 ? 1_555 CA ? D CA . ? A CA 303 ? 1_555 OE1 ? A GLU 143 ? A GLU 205 ? 1_555 131.2 ? 10 OE2 ? A GLU 60 ? A GLU 122 ? 1_555 CA ? D CA . ? A CA 303 ? 1_555 OE1 ? A GLU 143 ? A GLU 205 ? 1_555 87.5 ? 11 O ? A VAL 54 ? A VAL 116 ? 1_555 CA ? D CA . ? A CA 303 ? 1_555 OE2 ? A GLU 143 ? A GLU 205 ? 1_555 131.9 ? 12 OD1 ? A ASN 56 ? A ASN 118 ? 1_555 CA ? D CA . ? A CA 303 ? 1_555 OE2 ? A GLU 143 ? A GLU 205 ? 1_555 142.3 ? 13 OE1 ? A GLU 60 ? A GLU 122 ? 1_555 CA ? D CA . ? A CA 303 ? 1_555 OE2 ? A GLU 143 ? A GLU 205 ? 1_555 126.8 ? 14 OE2 ? A GLU 60 ? A GLU 122 ? 1_555 CA ? D CA . ? A CA 303 ? 1_555 OE2 ? A GLU 143 ? A GLU 205 ? 1_555 85.4 ? 15 OE1 ? A GLU 143 ? A GLU 205 ? 1_555 CA ? D CA . ? A CA 303 ? 1_555 OE2 ? A GLU 143 ? A GLU 205 ? 1_555 51.8 ? 16 O ? A VAL 54 ? A VAL 116 ? 1_555 CA ? D CA . ? A CA 303 ? 1_555 O ? F HOH . ? A HOH 432 ? 1_555 102.1 ? 17 OD1 ? A ASN 56 ? A ASN 118 ? 1_555 CA ? D CA . ? A CA 303 ? 1_555 O ? F HOH . ? A HOH 432 ? 1_555 75.6 ? 18 OE1 ? A GLU 60 ? A GLU 122 ? 1_555 CA ? D CA . ? A CA 303 ? 1_555 O ? F HOH . ? A HOH 432 ? 1_555 151.6 ? 19 OE2 ? A GLU 60 ? A GLU 122 ? 1_555 CA ? D CA . ? A CA 303 ? 1_555 O ? F HOH . ? A HOH 432 ? 1_555 159.5 ? 20 OE1 ? A GLU 143 ? A GLU 205 ? 1_555 CA ? D CA . ? A CA 303 ? 1_555 O ? F HOH . ? A HOH 432 ? 1_555 75.4 ? 21 OE2 ? A GLU 143 ? A GLU 205 ? 1_555 CA ? D CA . ? A CA 303 ? 1_555 O ? F HOH . ? A HOH 432 ? 1_555 75.2 ? 22 O ? A VAL 54 ? A VAL 116 ? 1_555 CA ? D CA . ? A CA 303 ? 1_555 O ? F HOH . ? A HOH 434 ? 1_555 150.7 ? 23 OD1 ? A ASN 56 ? A ASN 118 ? 1_555 CA ? D CA . ? A CA 303 ? 1_555 O ? F HOH . ? A HOH 434 ? 1_555 75.7 ? 24 OE1 ? A GLU 60 ? A GLU 122 ? 1_555 CA ? D CA . ? A CA 303 ? 1_555 O ? F HOH . ? A HOH 434 ? 1_555 85.3 ? 25 OE2 ? A GLU 60 ? A GLU 122 ? 1_555 CA ? D CA . ? A CA 303 ? 1_555 O ? F HOH . ? A HOH 434 ? 1_555 99.7 ? 26 OE1 ? A GLU 143 ? A GLU 205 ? 1_555 CA ? D CA . ? A CA 303 ? 1_555 O ? F HOH . ? A HOH 434 ? 1_555 128.1 ? 27 OE2 ? A GLU 143 ? A GLU 205 ? 1_555 CA ? D CA . ? A CA 303 ? 1_555 O ? F HOH . ? A HOH 434 ? 1_555 77.4 ? 28 O ? F HOH . ? A HOH 432 ? 1_555 CA ? D CA . ? A CA 303 ? 1_555 O ? F HOH . ? A HOH 434 ? 1_555 82.6 ? 29 OD1 ? A ASP 80 ? A ASP 142 ? 1_555 CA ? E CA . ? A CA 304 ? 1_555 OD2 ? A ASP 80 ? A ASP 142 ? 1_555 50.1 ? 30 OD1 ? A ASP 80 ? A ASP 142 ? 1_555 CA ? E CA . ? A CA 304 ? 1_555 OE1 ? A GLU 84 ? A GLU 146 ? 1_555 100.1 ? 31 OD2 ? A ASP 80 ? A ASP 142 ? 1_555 CA ? E CA . ? A CA 304 ? 1_555 OE1 ? A GLU 84 ? A GLU 146 ? 1_555 81.2 ? 32 OD1 ? A ASP 80 ? A ASP 142 ? 1_555 CA ? E CA . ? A CA 304 ? 1_555 OE2 ? A GLU 84 ? A GLU 146 ? 1_555 119.3 ? 33 OD2 ? A ASP 80 ? A ASP 142 ? 1_555 CA ? E CA . ? A CA 304 ? 1_555 OE2 ? A GLU 84 ? A GLU 146 ? 1_555 71.4 ? 34 OE1 ? A GLU 84 ? A GLU 146 ? 1_555 CA ? E CA . ? A CA 304 ? 1_555 OE2 ? A GLU 84 ? A GLU 146 ? 1_555 51.0 ? 35 OD1 ? A ASP 80 ? A ASP 142 ? 1_555 CA ? E CA . ? A CA 304 ? 1_555 OD1 ? A ASN 109 ? A ASN 171 ? 1_555 165.7 ? 36 OD2 ? A ASP 80 ? A ASP 142 ? 1_555 CA ? E CA . ? A CA 304 ? 1_555 OD1 ? A ASN 109 ? A ASN 171 ? 1_555 140.9 ? 37 OE1 ? A GLU 84 ? A GLU 146 ? 1_555 CA ? E CA . ? A CA 304 ? 1_555 OD1 ? A ASN 109 ? A ASN 171 ? 1_555 76.4 ? 38 OE2 ? A GLU 84 ? A GLU 146 ? 1_555 CA ? E CA . ? A CA 304 ? 1_555 OD1 ? A ASN 109 ? A ASN 171 ? 1_555 69.6 ? 39 OD1 ? A ASP 80 ? A ASP 142 ? 1_555 CA ? E CA . ? A CA 304 ? 1_555 O ? A GLU 114 ? A GLU 176 ? 1_555 96.8 ? 40 OD2 ? A ASP 80 ? A ASP 142 ? 1_555 CA ? E CA . ? A CA 304 ? 1_555 O ? A GLU 114 ? A GLU 176 ? 1_555 130.6 ? 41 OE1 ? A GLU 84 ? A GLU 146 ? 1_555 CA ? E CA . ? A CA 304 ? 1_555 O ? A GLU 114 ? A GLU 176 ? 1_555 147.1 ? 42 OE2 ? A GLU 84 ? A GLU 146 ? 1_555 CA ? E CA . ? A CA 304 ? 1_555 O ? A GLU 114 ? A GLU 176 ? 1_555 138.0 ? 43 OD1 ? A ASN 109 ? A ASN 171 ? 1_555 CA ? E CA . ? A CA 304 ? 1_555 O ? A GLU 114 ? A GLU 176 ? 1_555 80.2 ? 44 OD1 ? A ASP 80 ? A ASP 142 ? 1_555 CA ? E CA . ? A CA 304 ? 1_555 OD1 ? A ASP 115 ? A ASP 177 ? 1_555 81.2 ? 45 OD2 ? A ASP 80 ? A ASP 142 ? 1_555 CA ? E CA . ? A CA 304 ? 1_555 OD1 ? A ASP 115 ? A ASP 177 ? 1_555 123.4 ? 46 OE1 ? A GLU 84 ? A GLU 146 ? 1_555 CA ? E CA . ? A CA 304 ? 1_555 OD1 ? A ASP 115 ? A ASP 177 ? 1_555 81.2 ? 47 OE2 ? A GLU 84 ? A GLU 146 ? 1_555 CA ? E CA . ? A CA 304 ? 1_555 OD1 ? A ASP 115 ? A ASP 177 ? 1_555 129.0 ? 48 OD1 ? A ASN 109 ? A ASN 171 ? 1_555 CA ? E CA . ? A CA 304 ? 1_555 OD1 ? A ASP 115 ? A ASP 177 ? 1_555 84.5 ? 49 O ? A GLU 114 ? A GLU 176 ? 1_555 CA ? E CA . ? A CA 304 ? 1_555 OD1 ? A ASP 115 ? A ASP 177 ? 1_555 73.7 ? 50 OD1 ? A ASP 80 ? A ASP 142 ? 1_555 CA ? E CA . ? A CA 304 ? 1_555 O ? F HOH . ? A HOH 419 ? 1_555 109.7 ? 51 OD2 ? A ASP 80 ? A ASP 142 ? 1_555 CA ? E CA . ? A CA 304 ? 1_555 O ? F HOH . ? A HOH 419 ? 1_555 86.7 ? 52 OE1 ? A GLU 84 ? A GLU 146 ? 1_555 CA ? E CA . ? A CA 304 ? 1_555 O ? F HOH . ? A HOH 419 ? 1_555 128.3 ? 53 OE2 ? A GLU 84 ? A GLU 146 ? 1_555 CA ? E CA . ? A CA 304 ? 1_555 O ? F HOH . ? A HOH 419 ? 1_555 77.5 ? 54 OD1 ? A ASN 109 ? A ASN 171 ? 1_555 CA ? E CA . ? A CA 304 ? 1_555 O ? F HOH . ? A HOH 419 ? 1_555 82.6 ? 55 O ? A GLU 114 ? A GLU 176 ? 1_555 CA ? E CA . ? A CA 304 ? 1_555 O ? F HOH . ? A HOH 419 ? 1_555 70.0 ? 56 OD1 ? A ASP 115 ? A ASP 177 ? 1_555 CA ? E CA . ? A CA 304 ? 1_555 O ? F HOH . ? A HOH 419 ? 1_555 143.0 ? 57 OE1 ? A GLU 106 ? A GLU 168 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 OD1 ? A ASN 108 ? A ASN 170 ? 1_555 68.9 ? 58 OE1 ? A GLU 106 ? A GLU 168 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 OE1 ? A GLU 114 ? A GLU 176 ? 1_555 140.2 ? 59 OD1 ? A ASN 108 ? A ASN 170 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 OE1 ? A GLU 114 ? A GLU 176 ? 1_555 72.9 ? 60 OE1 ? A GLU 106 ? A GLU 168 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 OD1 ? A ASN 130 ? A ASN 192 ? 1_555 69.8 ? 61 OD1 ? A ASN 108 ? A ASN 170 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 OD1 ? A ASN 130 ? A ASN 192 ? 1_555 138.8 ? 62 OE1 ? A GLU 114 ? A GLU 176 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 OD1 ? A ASN 130 ? A ASN 192 ? 1_555 147.5 ? 63 OE1 ? A GLU 106 ? A GLU 168 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O ? A ASP 131 ? A ASP 193 ? 1_555 134.7 ? 64 OD1 ? A ASN 108 ? A ASN 170 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O ? A ASP 131 ? A ASP 193 ? 1_555 135.2 ? 65 OE1 ? A GLU 114 ? A GLU 176 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O ? A ASP 131 ? A ASP 193 ? 1_555 70.1 ? 66 OD1 ? A ASN 130 ? A ASN 192 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O ? A ASP 131 ? A ASP 193 ? 1_555 78.4 ? 67 OE1 ? A GLU 106 ? A GLU 168 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 OD1 ? A ASP 131 ? A ASP 193 ? 1_555 78.4 ? 68 OD1 ? A ASN 108 ? A ASN 170 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 OD1 ? A ASP 131 ? A ASP 193 ? 1_555 82.2 ? 69 OE1 ? A GLU 114 ? A GLU 176 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 OD1 ? A ASP 131 ? A ASP 193 ? 1_555 85.7 ? 70 OD1 ? A ASN 130 ? A ASN 192 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 OD1 ? A ASP 131 ? A ASP 193 ? 1_555 91.4 ? 71 O ? A ASP 131 ? A ASP 193 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 OD1 ? A ASP 131 ? A ASP 193 ? 1_555 70.8 ? 72 OE1 ? A GLU 106 ? A GLU 168 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O3 ? B GLC . ? B GLC 2 ? 1_555 76.6 ? 73 OD1 ? A ASN 108 ? A ASN 170 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O3 ? B GLC . ? B GLC 2 ? 1_555 80.2 ? 74 OE1 ? A GLU 114 ? A GLU 176 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O3 ? B GLC . ? B GLC 2 ? 1_555 107.9 ? 75 OD1 ? A ASN 130 ? A ASN 192 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O3 ? B GLC . ? B GLC 2 ? 1_555 88.8 ? 76 O ? A ASP 131 ? A ASP 193 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O3 ? B GLC . ? B GLC 2 ? 1_555 135.0 ? 77 OD1 ? A ASP 131 ? A ASP 193 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O3 ? B GLC . ? B GLC 2 ? 1_555 153.3 ? 78 OE1 ? A GLU 106 ? A GLU 168 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O4 ? B GLC . ? B GLC 2 ? 1_555 136.7 ? 79 OD1 ? A ASN 108 ? A ASN 170 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O4 ? B GLC . ? B GLC 2 ? 1_555 126.3 ? 80 OE1 ? A GLU 114 ? A GLU 176 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O4 ? B GLC . ? B GLC 2 ? 1_555 76.8 ? 81 OD1 ? A ASN 130 ? A ASN 192 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O4 ? B GLC . ? B GLC 2 ? 1_555 84.2 ? 82 O ? A ASP 131 ? A ASP 193 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O4 ? B GLC . ? B GLC 2 ? 1_555 67.5 ? 83 OD1 ? A ASP 131 ? A ASP 193 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O4 ? B GLC . ? B GLC 2 ? 1_555 138.1 ? 84 O3 ? B GLC . ? B GLC 2 ? 1_555 CA ? C CA . ? A CA 302 ? 1_555 O4 ? B GLC . ? B GLC 2 ? 1_555 68.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-05-25 2 'Structure model' 1 1 2016-08-31 3 'Structure model' 1 2 2016-10-19 4 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Non-polymer description' 8 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' citation 4 4 'Structure model' entity 5 4 'Structure model' entity_name_com 6 4 'Structure model' pdbx_branch_scheme 7 4 'Structure model' pdbx_chem_comp_identifier 8 4 'Structure model' pdbx_entity_branch 9 4 'Structure model' pdbx_entity_branch_descriptor 10 4 'Structure model' pdbx_entity_branch_link 11 4 'Structure model' pdbx_entity_branch_list 12 4 'Structure model' pdbx_entity_nonpoly 13 4 'Structure model' pdbx_molecule_features 14 4 'Structure model' pdbx_nonpoly_scheme 15 4 'Structure model' pdbx_struct_conn_angle 16 4 'Structure model' pdbx_struct_oper_list 17 4 'Structure model' struct_conn 18 4 'Structure model' struct_conn_type 19 4 'Structure model' struct_site 20 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.B_iso_or_equiv' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_atom_site.auth_asym_id' 6 4 'Structure model' '_atom_site.auth_atom_id' 7 4 'Structure model' '_atom_site.auth_comp_id' 8 4 'Structure model' '_atom_site.auth_seq_id' 9 4 'Structure model' '_atom_site.label_atom_id' 10 4 'Structure model' '_atom_site.label_comp_id' 11 4 'Structure model' '_atom_site.type_symbol' 12 4 'Structure model' '_chem_comp.formula' 13 4 'Structure model' '_chem_comp.formula_weight' 14 4 'Structure model' '_chem_comp.id' 15 4 'Structure model' '_chem_comp.mon_nstd_flag' 16 4 'Structure model' '_chem_comp.name' 17 4 'Structure model' '_chem_comp.pdbx_synonyms' 18 4 'Structure model' '_chem_comp.type' 19 4 'Structure model' '_citation.journal_id_CSD' 20 4 'Structure model' '_entity.formula_weight' 21 4 'Structure model' '_entity.pdbx_description' 22 4 'Structure model' '_entity.src_method' 23 4 'Structure model' '_entity.type' 24 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 25 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 26 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 27 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 28 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 29 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 30 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 31 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 32 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 33 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 34 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.1.26 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _pdbx_entry_details.compound_details ? _pdbx_entry_details.entry_id 4ZRW _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'AUTHORS HAVE INDICATED THAT THE CORRECT SEQUENCE HAS BEEN DEPOSITED AT THE NCBI: SEQUENCE XM_592701.4' _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OH _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 TYR _pdbx_validate_close_contact.auth_seq_id_1 127 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 SER _pdbx_validate_close_contact.auth_seq_id_2 184 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 82 ? ? 82.39 -8.70 2 1 GLN A 87 ? ? 47.83 -128.83 3 1 LEU A 161 ? ? -104.06 57.99 4 1 THR A 174 ? ? 57.12 16.35 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 71 ? A GLY 9 2 1 Y 1 A SER 72 ? A SER 10 3 1 Y 1 A ILE 211 ? A ILE 149 # _pdbx_audit_support.funding_organization 'Wellcome Trust' _pdbx_audit_support.country 'United Kingdom' _pdbx_audit_support.grant_number 093599 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 GLC 1 B GLC 1 A TRE 300 n B 2 GLC 2 B GLC 2 A TRE 300 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GLC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpa GLC 'COMMON NAME' GMML 1.0 a-D-glucopyranose GLC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Glcp GLC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGlcpa1-1DGlcpa 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,2,1/[a2122h-1a_1-5]/1-1/a1-b1' WURCS PDB2Glycan 1.1.0 3 2 '[][a-D-Glcp]{[(1+1)][a-D-Glcp]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_2 O1 _pdbx_entity_branch_link.leaving_atom_id_2 HO1 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 GLC 1 n 2 GLC 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CALCIUM ION' CA 4 water HOH #