data_4ZSC # _entry.id 4ZSC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4ZSC WWPDB D_1000209809 # _pdbx_database_related.db_name PDB _pdbx_database_related.details . _pdbx_database_related.db_id 3RDC _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4ZSC _pdbx_database_status.recvd_initial_deposition_date 2015-05-13 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gelin, M.' 1 'Delfosse, V.' 2 'Allemand, F.' 3 'Hoh, F.' 4 'Sallaz-Damaz, Y.' 5 'Pirocchi, M.' 6 'Bourguet, W.' 7 'Ferrer, J.-L.' 8 'Labesse, G.' 9 'Guichou, J.-F.' 10 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_id_ASTM ABCRE6 _citation.journal_id_CSD ? _citation.journal_id_ISSN 1399-0047 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 71 _citation.language ? _citation.page_first 1777 _citation.page_last 1787 _citation.title ;Combining `dry' co-crystallization and in situ diffraction to facilitate ligand screening by X-ray crystallography. ; _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1107/S1399004715010342 _citation.pdbx_database_id_PubMed 26249358 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Gelin, M.' 1 primary 'Delfosse, V.' 2 primary 'Allemand, F.' 3 primary 'Hoh, F.' 4 primary 'Sallaz-Damaz, Y.' 5 primary 'Pirocchi, M.' 6 primary 'Bourguet, W.' 7 primary 'Ferrer, J.L.' 8 primary 'Labesse, G.' 9 primary 'Guichou, J.F.' 10 # _cell.length_a 57.866 _cell.length_b 57.866 _cell.length_c 88.463 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4ZSC _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.entry_id 4ZSC _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Peptidyl-prolyl cis-trans isomerase F, mitochondrial' 17652.125 1 5.2.1.8 K133I 'UNP residues 44-207' ? 2 non-polymer syn 'ethyl N-[(4-aminobenzyl)carbamoyl]glycinate' 251.282 1 ? ? ? ? 3 water nat water 18.015 91 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PPIase F,Cyclophilin D,CypD,Cyclophilin F,Mitochondrial cyclophilin,CyP-M,Rotamase F' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGS RFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDC GQLS ; _entity_poly.pdbx_seq_one_letter_code_can ;GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGS RFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDC GQLS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ASN n 1 3 PRO n 1 4 LEU n 1 5 VAL n 1 6 TYR n 1 7 LEU n 1 8 ASP n 1 9 VAL n 1 10 ASP n 1 11 ALA n 1 12 ASN n 1 13 GLY n 1 14 LYS n 1 15 PRO n 1 16 LEU n 1 17 GLY n 1 18 ARG n 1 19 VAL n 1 20 VAL n 1 21 LEU n 1 22 GLU n 1 23 LEU n 1 24 LYS n 1 25 ALA n 1 26 ASP n 1 27 VAL n 1 28 VAL n 1 29 PRO n 1 30 LYS n 1 31 THR n 1 32 ALA n 1 33 GLU n 1 34 ASN n 1 35 PHE n 1 36 ARG n 1 37 ALA n 1 38 LEU n 1 39 CYS n 1 40 THR n 1 41 GLY n 1 42 GLU n 1 43 LYS n 1 44 GLY n 1 45 PHE n 1 46 GLY n 1 47 TYR n 1 48 LYS n 1 49 GLY n 1 50 SER n 1 51 THR n 1 52 PHE n 1 53 HIS n 1 54 ARG n 1 55 VAL n 1 56 ILE n 1 57 PRO n 1 58 SER n 1 59 PHE n 1 60 MET n 1 61 CYS n 1 62 GLN n 1 63 ALA n 1 64 GLY n 1 65 ASP n 1 66 PHE n 1 67 THR n 1 68 ASN n 1 69 HIS n 1 70 ASN n 1 71 GLY n 1 72 THR n 1 73 GLY n 1 74 GLY n 1 75 LYS n 1 76 SER n 1 77 ILE n 1 78 TYR n 1 79 GLY n 1 80 SER n 1 81 ARG n 1 82 PHE n 1 83 PRO n 1 84 ASP n 1 85 GLU n 1 86 ASN n 1 87 PHE n 1 88 THR n 1 89 LEU n 1 90 LYS n 1 91 HIS n 1 92 VAL n 1 93 GLY n 1 94 PRO n 1 95 GLY n 1 96 VAL n 1 97 LEU n 1 98 SER n 1 99 MET n 1 100 ALA n 1 101 ASN n 1 102 ALA n 1 103 GLY n 1 104 PRO n 1 105 ASN n 1 106 THR n 1 107 ASN n 1 108 GLY n 1 109 SER n 1 110 GLN n 1 111 PHE n 1 112 PHE n 1 113 ILE n 1 114 CYS n 1 115 THR n 1 116 ILE n 1 117 LYS n 1 118 THR n 1 119 ASP n 1 120 TRP n 1 121 LEU n 1 122 ASP n 1 123 GLY n 1 124 LYS n 1 125 HIS n 1 126 VAL n 1 127 VAL n 1 128 PHE n 1 129 GLY n 1 130 HIS n 1 131 VAL n 1 132 ILE n 1 133 GLU n 1 134 GLY n 1 135 MET n 1 136 ASP n 1 137 VAL n 1 138 VAL n 1 139 LYS n 1 140 LYS n 1 141 ILE n 1 142 GLU n 1 143 SER n 1 144 PHE n 1 145 GLY n 1 146 SER n 1 147 LYS n 1 148 SER n 1 149 GLY n 1 150 ARG n 1 151 THR n 1 152 SER n 1 153 LYS n 1 154 LYS n 1 155 ILE n 1 156 VAL n 1 157 ILE n 1 158 THR n 1 159 ASP n 1 160 CYS n 1 161 GLY n 1 162 GLN n 1 163 LEU n 1 164 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 164 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PPIF, CYP3' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PPIF_HUMAN _struct_ref.pdbx_db_accession P30405 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGS RFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGRTSKKIVITDC GQLS ; _struct_ref.pdbx_align_begin 44 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4ZSC _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 164 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P30405 _struct_ref_seq.db_align_beg 44 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 207 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 44 _struct_ref_seq.pdbx_auth_seq_align_end 207 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4ZSC _struct_ref_seq_dif.mon_id ILE _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 132 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P30405 _struct_ref_seq_dif.db_mon_id LYS _struct_ref_seq_dif.pdbx_seq_db_seq_num 175 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 175 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EA4 non-polymer . 'ethyl N-[(4-aminobenzyl)carbamoyl]glycinate' ? 'C12 H17 N3 O3' 251.282 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4ZSC _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.10 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 41.36 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.3 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '30% PEG4000' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 298 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-05-07 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9797 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ESRF BEAMLINE BM30A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9797 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BM30A _diffrn_source.pdbx_synchrotron_site ESRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4ZSC _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.50 _reflns.d_resolution_low 48.4 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 16982 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 73.1 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 2.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 12.1 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _refine.entry_id 4ZSC _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_d_res_high 1.5000 _refine.ls_d_res_low 48.4300 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 72.0500 _refine.ls_number_reflns_obs 16982 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.ls_matrix_type ? _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1350 _refine.ls_R_factor_R_work 0.1336 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1628 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.8000 _refine.ls_number_reflns_R_free 862 _refine.ls_number_reflns_R_work ? _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 9.8170 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.0200 _refine.aniso_B[2][2] 0.0200 _refine.aniso_B[3][3] -0.0400 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9750 _refine.correlation_coeff_Fo_to_Fc_free 0.9590 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.1230 _refine.pdbx_overall_ESU_R_Free 0.0790 _refine.overall_SU_ML 0.0370 _refine.overall_SU_B 2.2230 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 35.330 _refine.B_iso_min 4.470 _refine.pdbx_overall_phase_error ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_R_free_error_details ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.5000 _refine_hist.d_res_low 48.4300 _refine_hist.pdbx_number_atoms_ligand 18 _refine_hist.number_atoms_solvent 91 _refine_hist.number_atoms_total 1334 _refine_hist.pdbx_number_residues_total 164 _refine_hist.pdbx_B_iso_mean_ligand 10.23 _refine_hist.pdbx_B_iso_mean_solvent 19.82 _refine_hist.pdbx_number_atoms_protein 1225 _refine_hist.pdbx_number_atoms_nucleic_acid 0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' r_bond_refined_d 1312 0.007 0.019 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1240 0.002 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1778 1.300 1.958 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 2865 0.887 3.005 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 174 5.938 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 54 30.012 24.259 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 215 12.404 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 5 17.501 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 192 0.082 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1522 0.005 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 311 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 670 0.495 0.913 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 671 0.495 0.913 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 837 0.615 1.375 ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 2552 0.833 3.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_free 35 14.002 5.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded 2574 2.256 5.000 ? ? # _refine_ls_shell.d_res_high 1.5000 _refine_ls_shell.d_res_low 1.5390 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 78.1600 _refine_ls_shell.number_reflns_R_work 1330 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.1700 _refine_ls_shell.R_factor_R_free 0.2100 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 66 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1396 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_obs ? # _struct.entry_id 4ZSC _struct.title 'Human Cyclophilin D Complexed with an Inhibitor at room temperature' _struct.pdbx_descriptor 'Peptidyl-prolyl cis-trans isomerase F, mitochondrial (E.C.5.2.1.8)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4ZSC _struct_keywords.text 'isomerase inhibitor complex, isomerase' _struct_keywords.pdbx_keywords ISOMERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 VAL A 28 ? GLY A 41 ? VAL A 71 GLY A 84 1 ? 14 HELX_P HELX_P2 AA2 THR A 118 ? ASP A 122 ? THR A 161 ASP A 165 5 ? 5 HELX_P HELX_P3 AA3 GLY A 134 ? PHE A 144 ? GLY A 177 PHE A 187 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 8 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA1 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 PHE A 52 ? ILE A 56 ? PHE A 95 ILE A 99 AA1 2 MET A 60 ? ALA A 63 ? MET A 103 ALA A 106 AA1 3 PHE A 111 ? CYS A 114 ? PHE A 154 CYS A 157 AA1 4 VAL A 96 ? MET A 99 ? VAL A 139 MET A 142 AA1 5 VAL A 127 ? GLU A 133 ? VAL A 170 GLU A 176 AA1 6 LYS A 14 ? LEU A 23 ? LYS A 57 LEU A 66 AA1 7 LEU A 4 ? ALA A 11 ? LEU A 47 ALA A 54 AA1 8 ILE A 155 ? GLN A 162 ? ILE A 198 GLN A 205 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ARG A 54 ? N ARG A 97 O GLN A 62 ? O GLN A 105 AA1 2 3 N ALA A 63 ? N ALA A 106 O PHE A 111 ? O PHE A 154 AA1 3 4 O PHE A 112 ? O PHE A 155 N SER A 98 ? N SER A 141 AA1 4 5 N LEU A 97 ? N LEU A 140 O GLY A 129 ? O GLY A 172 AA1 5 6 O ILE A 132 ? O ILE A 175 N VAL A 20 ? N VAL A 63 AA1 6 7 O LEU A 16 ? O LEU A 59 N VAL A 9 ? N VAL A 52 AA1 7 8 N ASP A 8 ? N ASP A 51 O ASP A 159 ? O ASP A 202 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id EA4 _struct_site.pdbx_auth_seq_id 301 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 12 _struct_site.details 'binding site for residue EA4 A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 ARG A 54 ? ARG A 97 . ? 1_555 ? 2 AC1 12 GLN A 62 ? GLN A 105 . ? 1_555 ? 3 AC1 12 GLY A 71 ? GLY A 114 . ? 1_555 ? 4 AC1 12 ARG A 81 ? ARG A 124 . ? 1_555 ? 5 AC1 12 ALA A 100 ? ALA A 143 . ? 1_555 ? 6 AC1 12 ASN A 101 ? ASN A 144 . ? 1_555 ? 7 AC1 12 THR A 106 ? THR A 149 . ? 1_555 ? 8 AC1 12 GLN A 110 ? GLN A 153 . ? 1_555 ? 9 AC1 12 PHE A 112 ? PHE A 155 . ? 1_555 ? 10 AC1 12 HIS A 125 ? HIS A 168 . ? 1_555 ? 11 AC1 12 HOH C . ? HOH A 441 . ? 1_555 ? 12 AC1 12 HOH C . ? HOH A 463 . ? 1_555 ? # _atom_sites.entry_id 4ZSC _atom_sites.fract_transf_matrix[1][1] 0.017281 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017281 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011304 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 44 44 GLY GLY A . n A 1 2 ASN 2 45 45 ASN ASN A . n A 1 3 PRO 3 46 46 PRO PRO A . n A 1 4 LEU 4 47 47 LEU LEU A . n A 1 5 VAL 5 48 48 VAL VAL A . n A 1 6 TYR 6 49 49 TYR TYR A . n A 1 7 LEU 7 50 50 LEU LEU A . n A 1 8 ASP 8 51 51 ASP ASP A . n A 1 9 VAL 9 52 52 VAL VAL A . n A 1 10 ASP 10 53 53 ASP ASP A . n A 1 11 ALA 11 54 54 ALA ALA A . n A 1 12 ASN 12 55 55 ASN ASN A . n A 1 13 GLY 13 56 56 GLY GLY A . n A 1 14 LYS 14 57 57 LYS LYS A . n A 1 15 PRO 15 58 58 PRO PRO A . n A 1 16 LEU 16 59 59 LEU LEU A . n A 1 17 GLY 17 60 60 GLY GLY A . n A 1 18 ARG 18 61 61 ARG ARG A . n A 1 19 VAL 19 62 62 VAL VAL A . n A 1 20 VAL 20 63 63 VAL VAL A . n A 1 21 LEU 21 64 64 LEU LEU A . n A 1 22 GLU 22 65 65 GLU GLU A . n A 1 23 LEU 23 66 66 LEU LEU A . n A 1 24 LYS 24 67 67 LYS LYS A . n A 1 25 ALA 25 68 68 ALA ALA A . n A 1 26 ASP 26 69 69 ASP ASP A . n A 1 27 VAL 27 70 70 VAL VAL A . n A 1 28 VAL 28 71 71 VAL VAL A . n A 1 29 PRO 29 72 72 PRO PRO A . n A 1 30 LYS 30 73 73 LYS LYS A . n A 1 31 THR 31 74 74 THR THR A . n A 1 32 ALA 32 75 75 ALA ALA A . n A 1 33 GLU 33 76 76 GLU GLU A . n A 1 34 ASN 34 77 77 ASN ASN A . n A 1 35 PHE 35 78 78 PHE PHE A . n A 1 36 ARG 36 79 79 ARG ARG A . n A 1 37 ALA 37 80 80 ALA ALA A . n A 1 38 LEU 38 81 81 LEU LEU A . n A 1 39 CYS 39 82 82 CYS CYS A . n A 1 40 THR 40 83 83 THR THR A . n A 1 41 GLY 41 84 84 GLY GLY A . n A 1 42 GLU 42 85 85 GLU GLU A . n A 1 43 LYS 43 86 86 LYS LYS A . n A 1 44 GLY 44 87 87 GLY GLY A . n A 1 45 PHE 45 88 88 PHE PHE A . n A 1 46 GLY 46 89 89 GLY GLY A . n A 1 47 TYR 47 90 90 TYR TYR A . n A 1 48 LYS 48 91 91 LYS LYS A . n A 1 49 GLY 49 92 92 GLY GLY A . n A 1 50 SER 50 93 93 SER SER A . n A 1 51 THR 51 94 94 THR THR A . n A 1 52 PHE 52 95 95 PHE PHE A . n A 1 53 HIS 53 96 96 HIS HIS A . n A 1 54 ARG 54 97 97 ARG ARG A . n A 1 55 VAL 55 98 98 VAL VAL A . n A 1 56 ILE 56 99 99 ILE ILE A . n A 1 57 PRO 57 100 100 PRO PRO A . n A 1 58 SER 58 101 101 SER SER A . n A 1 59 PHE 59 102 102 PHE PHE A . n A 1 60 MET 60 103 103 MET MET A . n A 1 61 CYS 61 104 104 CYS CYS A . n A 1 62 GLN 62 105 105 GLN GLN A . n A 1 63 ALA 63 106 106 ALA ALA A . n A 1 64 GLY 64 107 107 GLY GLY A . n A 1 65 ASP 65 108 108 ASP ASP A . n A 1 66 PHE 66 109 109 PHE PHE A . n A 1 67 THR 67 110 110 THR THR A . n A 1 68 ASN 68 111 111 ASN ASN A . n A 1 69 HIS 69 112 112 HIS HIS A . n A 1 70 ASN 70 113 113 ASN ASN A . n A 1 71 GLY 71 114 114 GLY GLY A . n A 1 72 THR 72 115 115 THR THR A . n A 1 73 GLY 73 116 116 GLY GLY A . n A 1 74 GLY 74 117 117 GLY GLY A . n A 1 75 LYS 75 118 118 LYS LYS A . n A 1 76 SER 76 119 119 SER SER A . n A 1 77 ILE 77 120 120 ILE ILE A . n A 1 78 TYR 78 121 121 TYR TYR A . n A 1 79 GLY 79 122 122 GLY GLY A . n A 1 80 SER 80 123 123 SER SER A . n A 1 81 ARG 81 124 124 ARG ARG A . n A 1 82 PHE 82 125 125 PHE PHE A . n A 1 83 PRO 83 126 126 PRO PRO A . n A 1 84 ASP 84 127 127 ASP ASP A . n A 1 85 GLU 85 128 128 GLU GLU A . n A 1 86 ASN 86 129 129 ASN ASN A . n A 1 87 PHE 87 130 130 PHE PHE A . n A 1 88 THR 88 131 131 THR THR A . n A 1 89 LEU 89 132 132 LEU LEU A . n A 1 90 LYS 90 133 133 LYS LYS A . n A 1 91 HIS 91 134 134 HIS HIS A . n A 1 92 VAL 92 135 135 VAL VAL A . n A 1 93 GLY 93 136 136 GLY GLY A . n A 1 94 PRO 94 137 137 PRO PRO A . n A 1 95 GLY 95 138 138 GLY GLY A . n A 1 96 VAL 96 139 139 VAL VAL A . n A 1 97 LEU 97 140 140 LEU LEU A . n A 1 98 SER 98 141 141 SER SER A . n A 1 99 MET 99 142 142 MET MET A . n A 1 100 ALA 100 143 143 ALA ALA A . n A 1 101 ASN 101 144 144 ASN ASN A . n A 1 102 ALA 102 145 145 ALA ALA A . n A 1 103 GLY 103 146 146 GLY GLY A . n A 1 104 PRO 104 147 147 PRO PRO A . n A 1 105 ASN 105 148 148 ASN ASN A . n A 1 106 THR 106 149 149 THR THR A . n A 1 107 ASN 107 150 150 ASN ASN A . n A 1 108 GLY 108 151 151 GLY GLY A . n A 1 109 SER 109 152 152 SER SER A . n A 1 110 GLN 110 153 153 GLN GLN A . n A 1 111 PHE 111 154 154 PHE PHE A . n A 1 112 PHE 112 155 155 PHE PHE A . n A 1 113 ILE 113 156 156 ILE ILE A . n A 1 114 CYS 114 157 157 CYS CYS A . n A 1 115 THR 115 158 158 THR THR A . n A 1 116 ILE 116 159 159 ILE ILE A . n A 1 117 LYS 117 160 160 LYS LYS A . n A 1 118 THR 118 161 161 THR THR A . n A 1 119 ASP 119 162 162 ASP ASP A . n A 1 120 TRP 120 163 163 TRP TRP A . n A 1 121 LEU 121 164 164 LEU LEU A . n A 1 122 ASP 122 165 165 ASP ASP A . n A 1 123 GLY 123 166 166 GLY GLY A . n A 1 124 LYS 124 167 167 LYS LYS A . n A 1 125 HIS 125 168 168 HIS HIS A . n A 1 126 VAL 126 169 169 VAL VAL A . n A 1 127 VAL 127 170 170 VAL VAL A . n A 1 128 PHE 128 171 171 PHE PHE A . n A 1 129 GLY 129 172 172 GLY GLY A . n A 1 130 HIS 130 173 173 HIS HIS A . n A 1 131 VAL 131 174 174 VAL VAL A . n A 1 132 ILE 132 175 175 ILE ILE A . n A 1 133 GLU 133 176 176 GLU GLU A . n A 1 134 GLY 134 177 177 GLY GLY A . n A 1 135 MET 135 178 178 MET MET A . n A 1 136 ASP 136 179 179 ASP ASP A . n A 1 137 VAL 137 180 180 VAL VAL A . n A 1 138 VAL 138 181 181 VAL VAL A . n A 1 139 LYS 139 182 182 LYS LYS A . n A 1 140 LYS 140 183 183 LYS LYS A . n A 1 141 ILE 141 184 184 ILE ILE A . n A 1 142 GLU 142 185 185 GLU GLU A . n A 1 143 SER 143 186 186 SER SER A . n A 1 144 PHE 144 187 187 PHE PHE A . n A 1 145 GLY 145 188 188 GLY GLY A . n A 1 146 SER 146 189 189 SER SER A . n A 1 147 LYS 147 190 190 LYS LYS A . n A 1 148 SER 148 191 191 SER SER A . n A 1 149 GLY 149 192 192 GLY GLY A . n A 1 150 ARG 150 193 193 ARG ARG A . n A 1 151 THR 151 194 194 THR THR A . n A 1 152 SER 152 195 195 SER SER A . n A 1 153 LYS 153 196 196 LYS LYS A . n A 1 154 LYS 154 197 197 LYS LYS A . n A 1 155 ILE 155 198 198 ILE ILE A . n A 1 156 VAL 156 199 199 VAL VAL A . n A 1 157 ILE 157 200 200 ILE ILE A . n A 1 158 THR 158 201 201 THR THR A . n A 1 159 ASP 159 202 202 ASP ASP A . n A 1 160 CYS 160 203 203 CYS CYS A . n A 1 161 GLY 161 204 204 GLY GLY A . n A 1 162 GLN 162 205 205 GLN GLN A . n A 1 163 LEU 163 206 206 LEU LEU A . n A 1 164 SER 164 207 207 SER SER A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EA4 1 301 1 EA4 EA4 A . C 3 HOH 1 401 284 HOH HOH A . C 3 HOH 2 402 297 HOH HOH A . C 3 HOH 3 403 310 HOH HOH A . C 3 HOH 4 404 296 HOH HOH A . C 3 HOH 5 405 294 HOH HOH A . C 3 HOH 6 406 275 HOH HOH A . C 3 HOH 7 407 287 HOH HOH A . C 3 HOH 8 408 209 HOH HOH A . C 3 HOH 9 409 21 HOH HOH A . C 3 HOH 10 410 315 HOH HOH A . C 3 HOH 11 411 30 HOH HOH A . C 3 HOH 12 412 222 HOH HOH A . C 3 HOH 13 413 298 HOH HOH A . C 3 HOH 14 414 236 HOH HOH A . C 3 HOH 15 415 5 HOH HOH A . C 3 HOH 16 416 6 HOH HOH A . C 3 HOH 17 417 10 HOH HOH A . C 3 HOH 18 418 272 HOH HOH A . C 3 HOH 19 419 286 HOH HOH A . C 3 HOH 20 420 290 HOH HOH A . C 3 HOH 21 421 299 HOH HOH A . C 3 HOH 22 422 285 HOH HOH A . C 3 HOH 23 423 35 HOH HOH A . C 3 HOH 24 424 16 HOH HOH A . C 3 HOH 25 425 274 HOH HOH A . C 3 HOH 26 426 304 HOH HOH A . C 3 HOH 27 427 19 HOH HOH A . C 3 HOH 28 428 11 HOH HOH A . C 3 HOH 29 429 4 HOH HOH A . C 3 HOH 30 430 33 HOH HOH A . C 3 HOH 31 431 40 HOH HOH A . C 3 HOH 32 432 13 HOH HOH A . C 3 HOH 33 433 291 HOH HOH A . C 3 HOH 34 434 26 HOH HOH A . C 3 HOH 35 435 27 HOH HOH A . C 3 HOH 36 436 280 HOH HOH A . C 3 HOH 37 437 292 HOH HOH A . C 3 HOH 38 438 281 HOH HOH A . C 3 HOH 39 439 293 HOH HOH A . C 3 HOH 40 440 283 HOH HOH A . C 3 HOH 41 441 18 HOH HOH A . C 3 HOH 42 442 8 HOH HOH A . C 3 HOH 43 443 260 HOH HOH A . C 3 HOH 44 444 32 HOH HOH A . C 3 HOH 45 445 211 HOH HOH A . C 3 HOH 46 446 313 HOH HOH A . C 3 HOH 47 447 277 HOH HOH A . C 3 HOH 48 448 41 HOH HOH A . C 3 HOH 49 449 22 HOH HOH A . C 3 HOH 50 450 306 HOH HOH A . C 3 HOH 51 451 7 HOH HOH A . C 3 HOH 52 452 250 HOH HOH A . C 3 HOH 53 453 247 HOH HOH A . C 3 HOH 54 454 29 HOH HOH A . C 3 HOH 55 455 282 HOH HOH A . C 3 HOH 56 456 319 HOH HOH A . C 3 HOH 57 457 303 HOH HOH A . C 3 HOH 58 458 317 HOH HOH A . C 3 HOH 59 459 278 HOH HOH A . C 3 HOH 60 460 1 HOH HOH A . C 3 HOH 61 461 223 HOH HOH A . C 3 HOH 62 462 216 HOH HOH A . C 3 HOH 63 463 45 HOH HOH A . C 3 HOH 64 464 314 HOH HOH A . C 3 HOH 65 465 309 HOH HOH A . C 3 HOH 66 466 273 HOH HOH A . C 3 HOH 67 467 15 HOH HOH A . C 3 HOH 68 468 2 HOH HOH A . C 3 HOH 69 469 307 HOH HOH A . C 3 HOH 70 470 23 HOH HOH A . C 3 HOH 71 471 47 HOH HOH A . C 3 HOH 72 472 295 HOH HOH A . C 3 HOH 73 473 37 HOH HOH A . C 3 HOH 74 474 276 HOH HOH A . C 3 HOH 75 475 39 HOH HOH A . C 3 HOH 76 476 28 HOH HOH A . C 3 HOH 77 477 301 HOH HOH A . C 3 HOH 78 478 308 HOH HOH A . C 3 HOH 79 479 316 HOH HOH A . C 3 HOH 80 480 255 HOH HOH A . C 3 HOH 81 481 302 HOH HOH A . C 3 HOH 82 482 288 HOH HOH A . C 3 HOH 83 483 20 HOH HOH A . C 3 HOH 84 484 289 HOH HOH A . C 3 HOH 85 485 311 HOH HOH A . C 3 HOH 86 486 305 HOH HOH A . C 3 HOH 87 487 318 HOH HOH A . C 3 HOH 88 488 300 HOH HOH A . C 3 HOH 89 489 279 HOH HOH A . C 3 HOH 90 490 312 HOH HOH A . C 3 HOH 91 491 3 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 6850 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-08-12 2 'Structure model' 1 1 2015-08-19 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _symmetry_equiv.id _symmetry_equiv.pos_as_xyz 1 'X, Y, Z' 2 '-Y+1/2, X+1/2, Z+1/4' 3 '-X, -Y, Z+1/2' 4 'Y+1/2, -X+1/2, Z+3/4' 5 'X+1/2, -Y+1/2, -Z+3/4' 6 'Y, X, -Z' 7 '-X+1/2, Y+1/2, -Z+1/4' 8 '-Y, -X, -Z+1/2' # _diffrn_reflns.diffrn_id 1 _diffrn_reflns.pdbx_d_res_high 2.233 _diffrn_reflns.pdbx_d_res_low 29.000 _diffrn_reflns.limit_h_max 25 _diffrn_reflns.limit_h_min 1 _diffrn_reflns.limit_k_max 18 _diffrn_reflns.limit_k_min 0 _diffrn_reflns.limit_l_max 38 _diffrn_reflns.limit_l_min 0 _diffrn_reflns.number 53929 _diffrn_reflns.pdbx_number_obs 53901 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0103 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 4 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 5 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 6 ? phasing ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? . 7 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 102 ? ? -145.72 -80.42 2 1 THR A 161 ? ? -110.15 65.93 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 57 ? CG ? A LYS 14 CG 2 1 Y 1 A LYS 57 ? CD ? A LYS 14 CD 3 1 Y 1 A LYS 57 ? CE ? A LYS 14 CE 4 1 Y 1 A LYS 57 ? NZ ? A LYS 14 NZ 5 1 Y 1 A LYS 190 ? CD ? A LYS 147 CD 6 1 Y 1 A LYS 190 ? CE ? A LYS 147 CE 7 1 Y 1 A LYS 190 ? NZ ? A LYS 147 NZ 8 1 Y 1 A ARG 193 ? CG ? A ARG 150 CG 9 1 Y 1 A ARG 193 ? CD ? A ARG 150 CD 10 1 Y 1 A ARG 193 ? NE ? A ARG 150 NE 11 1 Y 1 A ARG 193 ? CZ ? A ARG 150 CZ 12 1 Y 1 A ARG 193 ? NH1 ? A ARG 150 NH1 13 1 Y 1 A ARG 193 ? NH2 ? A ARG 150 NH2 14 1 Y 1 A LYS 197 ? CE ? A LYS 154 CE 15 1 Y 1 A LYS 197 ? NZ ? A LYS 154 NZ # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ethyl N-[(4-aminobenzyl)carbamoyl]glycinate' EA4 3 water HOH # _reflns_scale.group_code 1 #