HEADER PROTEIN/DNA 13-MAY-15 4ZSF TITLE CRYSTAL STRUCTURE OF PRE-SPECIFIC RESTRICTION ENDONUCLEASE BSAWI-DNA TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: BSAWI ENDONUCLEASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 GENE: BSAWIR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 316385; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: DH10B; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBAD24; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS RESTRICTION ENDONUCLEASE, PD-(D/E)XK NUCLEASE, PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.TAMULAITIENE,M.RUTKAUSKAS,S.GRAZULIS,V.SIKSNYS REVDAT 3 08-MAY-24 4ZSF 1 LINK REVDAT 2 17-JUL-19 4ZSF 1 REMARK REVDAT 1 07-OCT-15 4ZSF 0 JRNL AUTH G.TAMULAITIS,M.RUTKAUSKAS,M.ZAREMBA,S.GRAZULIS, JRNL AUTH 2 G.TAMULAITIENE,V.SIKSNYS JRNL TITL FUNCTIONAL SIGNIFICANCE OF PROTEIN ASSEMBLIES PREDICTED BY JRNL TITL 2 THE CRYSTAL STRUCTURE OF THE RESTRICTION ENDONUCLEASE BSAWI. JRNL REF NUCLEIC ACIDS RES. V. 43 8100 2015 JRNL REFN ESSN 1362-4962 JRNL PMID 26240380 JRNL DOI 10.1093/NAR/GKV768 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.3 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 41703 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.030 REMARK 3 FREE R VALUE TEST SET COUNT : 8024 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.4078 - 5.5794 1.00 2391 287 0.1617 0.1804 REMARK 3 2 5.5794 - 4.4340 1.00 2450 246 0.1281 0.1532 REMARK 3 3 4.4340 - 3.8751 1.00 2390 272 0.1231 0.1354 REMARK 3 4 3.8751 - 3.5215 1.00 2468 236 0.1362 0.1731 REMARK 3 5 3.5215 - 3.2695 1.00 2425 270 0.1458 0.2067 REMARK 3 6 3.2695 - 3.0770 1.00 2417 274 0.1542 0.1830 REMARK 3 7 3.0770 - 2.9230 1.00 2385 292 0.1697 0.2101 REMARK 3 8 2.9230 - 2.7959 1.00 2418 251 0.1510 0.2044 REMARK 3 9 2.7959 - 2.6884 1.00 2432 266 0.1587 0.1927 REMARK 3 10 2.6884 - 2.5957 1.00 2434 274 0.1572 0.2159 REMARK 3 11 2.5957 - 2.5146 1.00 2414 247 0.1514 0.1841 REMARK 3 12 2.5146 - 2.4427 1.00 2402 277 0.1570 0.2024 REMARK 3 13 2.4427 - 2.3784 1.00 2417 292 0.1401 0.1871 REMARK 3 14 2.3784 - 2.3204 1.00 2410 252 0.1413 0.1777 REMARK 3 15 2.3204 - 2.2677 1.00 2397 277 0.1511 0.1961 REMARK 3 16 2.2677 - 2.2195 1.00 2465 248 0.1525 0.1886 REMARK 3 17 2.2195 - 2.1751 1.00 2419 261 0.1441 0.1818 REMARK 3 18 2.1751 - 2.1341 1.00 2417 270 0.1568 0.1779 REMARK 3 19 2.1341 - 2.0960 1.00 2395 245 0.1516 0.2118 REMARK 3 20 2.0960 - 2.0604 1.00 2477 261 0.1540 0.1919 REMARK 3 21 2.0604 - 2.0272 1.00 2353 290 0.1658 0.2179 REMARK 3 22 2.0272 - 1.9960 1.00 2383 283 0.1656 0.2086 REMARK 3 23 1.9960 - 1.9667 1.00 2417 310 0.1746 0.1886 REMARK 3 24 1.9667 - 1.9390 1.00 2420 269 0.1705 0.2188 REMARK 3 25 1.9390 - 1.9128 1.00 2438 256 0.1803 0.2133 REMARK 3 26 1.9128 - 1.8880 1.00 2359 286 0.1965 0.2229 REMARK 3 27 1.8880 - 1.8644 1.00 2395 251 0.2090 0.2555 REMARK 3 28 1.8644 - 1.8419 0.99 2443 248 0.2246 0.2713 REMARK 3 29 1.8419 - 1.8205 0.94 2275 274 0.2474 0.2287 REMARK 3 30 1.8205 - 1.8000 0.88 2098 259 0.2632 0.2716 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 2698 REMARK 3 ANGLE : 1.659 3728 REMARK 3 CHIRALITY : 0.096 388 REMARK 3 PLANARITY : 0.010 446 REMARK 3 DIHEDRAL : 17.085 1017 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN B AND RESID 5:14) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5723 -42.2667 24.3115 REMARK 3 T TENSOR REMARK 3 T11: 0.1832 T22: 0.1436 REMARK 3 T33: 0.1838 T12: -0.0008 REMARK 3 T13: 0.0149 T23: 0.0180 REMARK 3 L TENSOR REMARK 3 L11: 1.2288 L22: 0.5005 REMARK 3 L33: 0.7744 L12: 0.3425 REMARK 3 L13: -0.6855 L23: -0.3844 REMARK 3 S TENSOR REMARK 3 S11: -0.1194 S12: -0.1244 S13: -0.3005 REMARK 3 S21: -0.0255 S22: 0.0147 S23: -0.0110 REMARK 3 S31: 0.1464 S32: 0.0191 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 95:172) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5731 -16.3292 9.5681 REMARK 3 T TENSOR REMARK 3 T11: 0.2240 T22: 0.1890 REMARK 3 T33: 0.1875 T12: -0.0040 REMARK 3 T13: -0.0134 T23: 0.0248 REMARK 3 L TENSOR REMARK 3 L11: 0.7592 L22: 2.3954 REMARK 3 L33: 1.0568 L12: -1.0079 REMARK 3 L13: 0.0470 L23: -0.7137 REMARK 3 S TENSOR REMARK 3 S11: -0.0635 S12: -0.0567 S13: -0.0733 REMARK 3 S21: 0.4184 S22: -0.0441 S23: -0.2105 REMARK 3 S31: -0.1404 S32: 0.1054 S33: -0.0008 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 173:272) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9666 -17.2967 -3.3925 REMARK 3 T TENSOR REMARK 3 T11: 0.1409 T22: 0.1949 REMARK 3 T33: 0.1837 T12: 0.0238 REMARK 3 T13: 0.0146 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.6599 L22: 2.1030 REMARK 3 L33: 2.2685 L12: 0.0135 REMARK 3 L13: 0.2097 L23: 0.5274 REMARK 3 S TENSOR REMARK 3 S11: 0.0089 S12: 0.1710 S13: 0.0048 REMARK 3 S21: -0.0257 S22: -0.0792 S23: 0.2562 REMARK 3 S31: 0.0367 S32: -0.2038 S33: -0.0020 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 1:4) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2413 -26.1133 4.2822 REMARK 3 T TENSOR REMARK 3 T11: 0.3693 T22: 0.5910 REMARK 3 T33: 0.3156 T12: -0.2552 REMARK 3 T13: -0.0525 T23: 0.0543 REMARK 3 L TENSOR REMARK 3 L11: 0.2067 L22: 0.3910 REMARK 3 L33: 1.0696 L12: -0.2848 REMARK 3 L13: 0.3233 L23: -0.4227 REMARK 3 S TENSOR REMARK 3 S11: -0.4289 S12: 0.7115 S13: -0.3514 REMARK 3 S21: -0.5691 S22: 0.5757 S23: 0.0569 REMARK 3 S31: -0.5441 S32: 0.3313 S33: 0.5835 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 5:14) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2603 -29.7162 23.5578 REMARK 3 T TENSOR REMARK 3 T11: 0.2152 T22: 0.2432 REMARK 3 T33: 0.1972 T12: 0.0055 REMARK 3 T13: -0.0381 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: 0.5701 L22: 0.6258 REMARK 3 L33: 0.9531 L12: -0.1857 REMARK 3 L13: -0.4490 L23: -0.4421 REMARK 3 S TENSOR REMARK 3 S11: -0.3224 S12: -0.4664 S13: 0.2092 REMARK 3 S21: 0.0744 S22: 0.1628 S23: -0.1042 REMARK 3 S31: -0.3076 S32: 0.1352 S33: -0.0043 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZSF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000209689. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X12 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9887, 0.97622 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.0.6 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41718 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.163 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 14.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 24.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 12.10 REMARK 200 R MERGE FOR SHELL (I) : 0.54100 REMARK 200 R SYM FOR SHELL (I) : 0.54100 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZATION BUFFER WAS 0.02 M REMARK 280 CALCIUM CHLORIDE, 0.1 M NA-SUCCINATE (PH 5.0), 30% (V/V) (+/-)-2- REMARK 280 METHYL-2,4-PENTANEDIOL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.74100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.74100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.78100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 68.16800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.78100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 68.16800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.74100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.78100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 68.16800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.74100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.78100 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 68.16800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -94.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 36.74100 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 13 NZ REMARK 470 LYS A 54 CE NZ REMARK 470 MET A 118 CG SD CE REMARK 470 GLN A 123 CD OE1 NE2 REMARK 470 LYS A 136 CE NZ REMARK 470 GLU A 137 CD OE1 OE2 REMARK 470 ILE A 168 CG1 CG2 CD1 REMARK 470 ARG A 169 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 170 CG OD1 OD2 REMARK 470 ARG A 171 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 174 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 177 CG CD OE1 OE2 REMARK 470 PHE A 198 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 200 CG CD CE NZ REMARK 470 MET A 201 CG SD CE REMARK 470 LYS A 229 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 566 O HOH A 567 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 119 O HOH B 136 3555 2.09 REMARK 500 O HOH B 124 O HOH B 136 3555 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC B 3 O3' DC B 3 C3' -0.041 REMARK 500 DA B 5 C5 DA B 5 N7 0.049 REMARK 500 DC B 6 O3' DC B 6 C3' -0.047 REMARK 500 DC B 6 N3 DC B 6 C4 -0.054 REMARK 500 DC B 7 O3' DC B 7 C3' -0.077 REMARK 500 DG B 8 N7 DG B 8 C8 0.041 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 34 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC B 3 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA B 5 O5' - P - OP2 ANGL. DEV. = -5.8 DEGREES REMARK 500 DC B 6 O3' - P - OP2 ANGL. DEV. = 7.5 DEGREES REMARK 500 DC B 6 O5' - P - OP2 ANGL. DEV. = -9.1 DEGREES REMARK 500 DC B 7 O4' - C1' - N1 ANGL. DEV. = -4.9 DEGREES REMARK 500 DG B 8 OP1 - P - OP2 ANGL. DEV. = 11.5 DEGREES REMARK 500 DG B 8 O5' - P - OP2 ANGL. DEV. = -7.5 DEGREES REMARK 500 DC B 11 O4' - C1' - N1 ANGL. DEV. = -5.0 DEGREES REMARK 500 DA B 13 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 170 -35.14 -136.77 REMARK 500 ASP A 233 -98.50 58.75 REMARK 500 ARG A 259 50.56 -144.10 REMARK 500 PHE A 263 43.23 -99.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 610 DISTANCE = 6.38 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 24 OD2 REMARK 620 2 ASP A 239 OD2 92.0 REMARK 620 3 HOH A 443 O 92.4 1.6 REMARK 620 4 HOH A 554 O 94.3 3.9 2.5 REMARK 620 5 HOH A 574 O 95.2 4.1 5.0 5.9 REMARK 620 6 HOH A 575 O 92.9 2.3 3.6 5.5 2.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 444 O REMARK 620 2 HOH A 477 O 90.5 REMARK 620 3 HOH A 502 O 82.6 99.3 REMARK 620 4 HOH A 516 O 76.8 100.9 151.1 REMARK 620 5 HOH A 521 O 88.3 170.7 89.7 69.8 REMARK 620 6 HOH A 609 O 175.9 90.1 93.3 107.1 91.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SIN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SIN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 304 DBREF 4ZSF A 1 272 UNP Q6UQ65 Q6UQ65_GEOSE 1 272 DBREF 4ZSF B 1 14 PDB 4ZSF 4ZSF 1 14 SEQRES 1 A 272 MET ASN PHE PHE GLU TYR CYS ILE SER THR TYR ALA LYS SEQRES 2 A 272 ILE PHE GLU GLU THR MET ASN ALA VAL GLY ASP GLU ARG SEQRES 3 A 272 VAL SER GLN LYS LYS ALA ILE ARG ASP THR MET ILE SER SEQRES 4 A 272 ALA MET ARG GLU PHE PRO ASN VAL GLU ALA ALA GLU ILE SEQRES 5 A 272 TRP LYS ALA VAL TYR SER ALA HIS MET ASP ARG LYS SER SEQRES 6 A 272 GLY ILE ALA ASP PRO ASP ILE ILE GLN LYS VAL ILE SER SEQRES 7 A 272 ALA GLU ASN SER TRP LYS LYS SER SER GLY HIS ALA PHE SEQRES 8 A 272 GLU GLU MET ILE LYS LEU LEU GLY ASN SER SER LEU GLU SEQRES 9 A 272 GLU TYR GLY MET ARG ILE LEU LEU GLN LYS ASP LEU ASN SEQRES 10 A 272 MET MET ILE GLU ASN GLN GLU ILE ALA ASN GLU PRO ARG SEQRES 11 A 272 ASP ILE ASN TRP LEU LYS GLU GLN ILE SER SER ASN VAL SEQRES 12 A 272 PHE ASP LEU TYR ILE THR VAL ARG ASN ASN ASP LYS GLU SEQRES 13 A 272 TYR VAL PHE GLY CYS ILE GLN SER LYS THR SER ILE ARG SEQRES 14 A 272 ASP ARG VAL THR ARG ASP ARG GLU PRO SER MET LYS ALA SEQRES 15 A 272 MET GLU ALA PHE PHE TRP SER VAL ALA ILE CYS LEU ASP SEQRES 16 A 272 GLY ASP PHE LEU LYS MET PRO LYS PHE ILE ALA MET VAL SEQRES 17 A 272 ASN GLY GLY THR SER ASN TYR ARG LEU ASN GLY TRP HIS SEQRES 18 A 272 GLY MET TYR VAL PHE TRP ASP LYS PRO THR ILE ASP ARG SEQRES 19 A 272 ILE TYR PRO ILE ASP ILE ASN LEU GLU LEU PHE VAL GLN SEQRES 20 A 272 HIS ALA ARG GLU ALA ALA GLU ASP TRP LEU HIS ARG ARG SEQRES 21 A 272 GLN TRP PHE ASN TYR GLU TRP LYS ALA GLY GLN LYS SEQRES 1 B 14 DC DT DC DG DA DC DC DG DG DT DC DG DA SEQRES 2 B 14 DG HET SIN A 301 8 HET SIN A 302 8 HET CA A 303 1 HET CA A 304 1 HETNAM SIN SUCCINIC ACID HETNAM CA CALCIUM ION FORMUL 3 SIN 2(C4 H6 O4) FORMUL 5 CA 2(CA 2+) FORMUL 7 HOH *247(H2 O) HELIX 1 AA1 ASN A 2 GLY A 23 1 22 HELIX 2 AA2 ASP A 24 PHE A 44 1 21 HELIX 3 AA3 GLU A 48 GLY A 66 1 19 HELIX 4 AA4 ASP A 69 GLU A 104 1 36 HELIX 5 AA5 GLN A 113 ASN A 122 1 10 HELIX 6 AA6 GLU A 128 SER A 141 1 14 HELIX 7 AA7 ARG A 171 ALA A 185 1 15 HELIX 8 AA8 GLY A 196 LYS A 200 5 5 HELIX 9 AA9 MET A 201 GLY A 210 1 10 HELIX 10 AB1 LEU A 242 ARG A 259 1 18 HELIX 11 AB2 ARG A 260 PHE A 263 5 4 SHEET 1 AA1 6 MET A 108 LEU A 112 0 SHEET 2 AA1 6 LEU A 146 ASN A 152 -1 O TYR A 147 N LEU A 111 SHEET 3 AA1 6 LYS A 155 LYS A 165 -1 O LYS A 155 N ASN A 152 SHEET 4 AA1 6 TRP A 188 CYS A 193 1 O TRP A 188 N CYS A 161 SHEET 5 AA1 6 GLY A 222 PHE A 226 1 O TYR A 224 N ALA A 191 SHEET 6 AA1 6 ILE A 235 ILE A 238 1 O TYR A 236 N MET A 223 LINK OD2 ASP A 24 CA CA A 304 1555 8445 2.49 LINK OD2 ASP A 239 CA CA A 304 1555 1555 2.31 LINK CA CA A 303 O HOH A 444 1555 1555 2.42 LINK CA CA A 303 O HOH A 477 1555 1555 2.38 LINK CA CA A 303 O HOH A 502 1555 1555 2.55 LINK CA CA A 303 O HOH A 516 1555 1555 2.63 LINK CA CA A 303 O HOH A 521 1555 1555 2.44 LINK CA CA A 303 O HOH A 609 1555 1555 2.46 LINK CA CA A 304 O HOH A 443 1555 1555 2.48 LINK CA CA A 304 O HOH A 554 1555 8545 2.52 LINK CA CA A 304 O HOH A 574 1555 8545 2.59 LINK CA CA A 304 O HOH A 575 1555 1555 2.71 SITE 1 AC1 2 LYS A 96 ASP A 115 SITE 1 AC2 3 ASN A 152 LEU A 257 HOH A 486 SITE 1 AC3 6 HOH A 444 HOH A 477 HOH A 502 HOH A 516 SITE 2 AC3 6 HOH A 521 HOH A 609 SITE 1 AC4 6 ASP A 24 ASP A 239 HOH A 443 HOH A 554 SITE 2 AC4 6 HOH A 574 HOH A 575 CRYST1 89.562 136.336 73.482 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011165 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007335 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013609 0.00000