HEADER CELL ADHESION 14-MAY-15 4ZT1 TITLE CRYSTAL STRUCTURE OF HUMAN E-CADHERIN (RESIDUES 3-213) IN X-DIMER TITLE 2 CONFORMATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CADHERIN-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 157-367; COMPND 5 SYNONYM: CAM 120/80,EPITHELIAL CADHERIN,E-CADHERIN,UVOMORULIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CDH1, CDHE, UVO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS ADHESION, CADHERIN, CALCIUM-BINDING PROTEIN, X-DIMER., CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR V.NARDONE,A.P.LUCARELLI,A.DALLE VEDOVE,E.PARISINI REVDAT 3 10-JAN-24 4ZT1 1 LINK REVDAT 2 08-JUN-16 4ZT1 1 JRNL REVDAT 1 01-JUN-16 4ZT1 0 JRNL AUTH V.NARDONE,A.P.LUCARELLI,A.DALLE VEDOVE,R.FANELLI, JRNL AUTH 2 A.TOMASSETTI,L.BELVISI,M.CIVERA,E.PARISINI JRNL TITL CRYSTAL STRUCTURE OF HUMAN E-CADHERIN-EC1EC2 IN COMPLEX WITH JRNL TITL 2 A PEPTIDOMIMETIC COMPETITIVE INHIBITOR OF CADHERIN JRNL TITL 3 HOMOPHILIC INTERACTION. JRNL REF J.MED.CHEM. V. 59 5089 2016 JRNL REFN ISSN 0022-2623 JRNL PMID 27120112 JRNL DOI 10.1021/ACS.JMEDCHEM.5B01487 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 44649 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2350 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3236 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.3150 REMARK 3 BIN FREE R VALUE SET COUNT : 170 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3180 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 382 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.76000 REMARK 3 B22 (A**2) : -1.73000 REMARK 3 B33 (A**2) : -2.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.52000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.130 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.066 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3238 ; 0.003 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3028 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4414 ; 0.507 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7016 ; 0.455 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 416 ; 9.152 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 140 ;39.087 ;26.429 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 526 ;14.710 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;20.586 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 530 ; 0.043 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3656 ; 0.016 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 646 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1670 ; 5.309 ; 4.289 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1669 ; 5.307 ; 4.286 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2084 ; 6.836 ; 6.408 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2085 ; 6.837 ; 6.412 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1568 ; 6.776 ; 4.892 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1565 ; 6.756 ; 4.879 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2329 ; 9.266 ; 7.068 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3813 ;14.124 ;35.531 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3599 ;11.173 ;34.944 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4ZT1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000209814. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48085 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 42.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.4 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 58.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.25300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2O72 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS 0.1 M, AMMONIUM SULFATE 1.3 M, REMARK 280 CALCIUM CHLORIDE 50 MM, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.22300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.20850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.22300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.20850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 3 REMARK 465 ILE A 4 REMARK 465 VAL B 3 REMARK 465 ILE B 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 107 O HOH B 501 2.07 REMARK 500 O HOH B 609 O HOH B 634 2.07 REMARK 500 O HOH A 731 O HOH A 733 2.12 REMARK 500 O LEU B 122 OG1 THR B 125 2.14 REMARK 500 O HOH A 695 O HOH A 732 2.15 REMARK 500 O HOH A 560 O HOH A 695 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 22 148.95 -178.41 REMARK 500 LYS A 28 37.52 -98.94 REMARK 500 ALA A 43 -87.85 -107.46 REMARK 500 GLU A 156 42.69 -95.68 REMARK 500 ASN A 161 65.09 -119.89 REMARK 500 ALA B 43 -75.24 -109.92 REMARK 500 VAL B 127 -60.19 -99.86 REMARK 500 GLU B 156 46.70 -106.20 REMARK 500 ASN B 161 68.50 -119.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 740 DISTANCE = 8.26 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE2 REMARK 620 2 GLU A 69 OE1 89.4 REMARK 620 3 GLU A 69 OE2 113.3 52.0 REMARK 620 4 ASP A 100 OD1 87.1 121.0 76.1 REMARK 620 5 GLN A 101 O 79.8 154.8 153.1 81.4 REMARK 620 6 ASP A 103 OD1 85.3 77.2 123.7 160.2 79.2 REMARK 620 7 ASP A 136 OD1 160.8 100.8 85.7 101.1 84.3 81.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE1 REMARK 620 2 ASP A 67 OD1 89.9 REMARK 620 3 GLU A 69 OE1 85.2 94.4 REMARK 620 4 ASP A 103 OD2 95.6 156.5 108.8 REMARK 620 5 HOH A 589 O 92.2 77.9 171.9 79.1 REMARK 620 6 HOH A 664 O 164.5 99.5 81.8 80.7 101.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 102 OD1 REMARK 620 2 ASN A 104 O 100.4 REMARK 620 3 ASP A 134 OD1 150.8 94.8 REMARK 620 4 ASP A 134 OD2 151.4 89.0 52.5 REMARK 620 5 ASP A 136 OD2 77.9 80.8 80.1 130.5 REMARK 620 6 ASN A 143 O 83.2 175.6 83.1 86.6 102.6 REMARK 620 7 ASP A 195 OD2 73.2 92.0 131.4 79.6 148.4 86.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 11 OE2 REMARK 620 2 GLU B 69 OE1 89.8 REMARK 620 3 GLU B 69 OE2 111.2 49.5 REMARK 620 4 ASP B 100 OD1 82.5 121.9 80.2 REMARK 620 5 GLN B 101 O 81.8 156.1 154.0 79.3 REMARK 620 6 ASP B 103 OD1 91.7 76.1 118.8 160.9 81.8 REMARK 620 7 ASP B 136 OD1 164.9 99.9 83.9 101.7 84.8 79.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 11 OE1 REMARK 620 2 ASP B 67 OD1 92.3 REMARK 620 3 GLU B 69 OE1 89.9 88.4 REMARK 620 4 ASP B 103 OD2 90.4 161.0 110.4 REMARK 620 5 HOH B 524 O 88.2 82.9 171.0 78.4 REMARK 620 6 HOH B 607 O 170.1 93.6 82.3 86.6 100.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 102 OD1 REMARK 620 2 ASN B 104 O 101.2 REMARK 620 3 ASP B 134 OD1 144.6 92.5 REMARK 620 4 ASP B 134 OD2 156.7 92.1 52.1 REMARK 620 5 ASP B 136 OD2 74.2 79.1 76.6 127.6 REMARK 620 6 ASN B 143 O 81.4 177.0 86.1 85.0 103.1 REMARK 620 7 ASP B 195 OD2 81.4 89.6 131.6 79.6 150.4 89.4 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 403 DBREF 4ZT1 A 3 213 UNP P12830 CADH1_HUMAN 157 367 DBREF 4ZT1 B 3 213 UNP P12830 CADH1_HUMAN 157 367 SEQRES 1 A 211 VAL ILE PRO PRO ILE SER CYS PRO GLU ASN GLU LYS GLY SEQRES 2 A 211 PRO PHE PRO LYS ASN LEU VAL GLN ILE LYS SER ASN LYS SEQRES 3 A 211 ASP LYS GLU GLY LYS VAL PHE TYR SER ILE THR GLY GLN SEQRES 4 A 211 GLY ALA ASP THR PRO PRO VAL GLY VAL PHE ILE ILE GLU SEQRES 5 A 211 ARG GLU THR GLY TRP LEU LYS VAL THR GLU PRO LEU ASP SEQRES 6 A 211 ARG GLU ARG ILE ALA THR TYR THR LEU PHE SER HIS ALA SEQRES 7 A 211 VAL SER SER ASN GLY ASN ALA VAL GLU ASP PRO MET GLU SEQRES 8 A 211 ILE LEU ILE THR VAL THR ASP GLN ASN ASP ASN LYS PRO SEQRES 9 A 211 GLU PHE THR GLN GLU VAL PHE LYS GLY SER VAL MET GLU SEQRES 10 A 211 GLY ALA LEU PRO GLY THR SER VAL MET GLU VAL THR ALA SEQRES 11 A 211 THR ASP ALA ASP ASP ASP VAL ASN THR TYR ASN ALA ALA SEQRES 12 A 211 ILE ALA TYR THR ILE LEU SER GLN ASP PRO GLU LEU PRO SEQRES 13 A 211 ASP LYS ASN MET PHE THR ILE ASN ARG ASN THR GLY VAL SEQRES 14 A 211 ILE SER VAL VAL THR THR GLY LEU ASP ARG GLU SER PHE SEQRES 15 A 211 PRO THR TYR THR LEU VAL VAL GLN ALA ALA ASP LEU GLN SEQRES 16 A 211 GLY GLU GLY LEU SER THR THR ALA THR ALA VAL ILE THR SEQRES 17 A 211 VAL THR ASP SEQRES 1 B 211 VAL ILE PRO PRO ILE SER CYS PRO GLU ASN GLU LYS GLY SEQRES 2 B 211 PRO PHE PRO LYS ASN LEU VAL GLN ILE LYS SER ASN LYS SEQRES 3 B 211 ASP LYS GLU GLY LYS VAL PHE TYR SER ILE THR GLY GLN SEQRES 4 B 211 GLY ALA ASP THR PRO PRO VAL GLY VAL PHE ILE ILE GLU SEQRES 5 B 211 ARG GLU THR GLY TRP LEU LYS VAL THR GLU PRO LEU ASP SEQRES 6 B 211 ARG GLU ARG ILE ALA THR TYR THR LEU PHE SER HIS ALA SEQRES 7 B 211 VAL SER SER ASN GLY ASN ALA VAL GLU ASP PRO MET GLU SEQRES 8 B 211 ILE LEU ILE THR VAL THR ASP GLN ASN ASP ASN LYS PRO SEQRES 9 B 211 GLU PHE THR GLN GLU VAL PHE LYS GLY SER VAL MET GLU SEQRES 10 B 211 GLY ALA LEU PRO GLY THR SER VAL MET GLU VAL THR ALA SEQRES 11 B 211 THR ASP ALA ASP ASP ASP VAL ASN THR TYR ASN ALA ALA SEQRES 12 B 211 ILE ALA TYR THR ILE LEU SER GLN ASP PRO GLU LEU PRO SEQRES 13 B 211 ASP LYS ASN MET PHE THR ILE ASN ARG ASN THR GLY VAL SEQRES 14 B 211 ILE SER VAL VAL THR THR GLY LEU ASP ARG GLU SER PHE SEQRES 15 B 211 PRO THR TYR THR LEU VAL VAL GLN ALA ALA ASP LEU GLN SEQRES 16 B 211 GLY GLU GLY LEU SER THR THR ALA THR ALA VAL ILE THR SEQRES 17 B 211 VAL THR ASP HET CA A 401 1 HET CA A 402 1 HET CA A 403 1 HET CA B 401 1 HET CA B 402 1 HET CA B 403 1 HETNAM CA CALCIUM ION FORMUL 3 CA 6(CA 2+) FORMUL 9 HOH *382(H2 O) HELIX 1 AA1 SER A 26 GLY A 32 5 7 HELIX 2 AA2 LEU A 196 GLU A 199 5 4 HELIX 3 AA3 LEU B 196 GLU B 199 5 4 SHEET 1 AA1 4 ILE A 7 PRO A 10 0 SHEET 2 AA1 4 MET A 92 THR A 99 1 O THR A 97 N ILE A 7 SHEET 3 AA1 4 THR A 73 SER A 82 -1 N LEU A 76 O ILE A 94 SHEET 4 AA1 4 VAL A 34 THR A 39 -1 N SER A 37 O HIS A 79 SHEET 1 AA2 3 LYS A 19 GLN A 23 0 SHEET 2 AA2 3 TRP A 59 VAL A 62 -1 O LEU A 60 N VAL A 22 SHEET 3 AA2 3 PHE A 51 ILE A 53 -1 N ILE A 52 O LYS A 61 SHEET 1 AA3 2 GLU A 107 PHE A 108 0 SHEET 2 AA3 2 ALA A 132 THR A 133 -1 O THR A 133 N GLU A 107 SHEET 1 AA4 4 VAL A 112 MET A 118 0 SHEET 2 AA4 4 SER A 202 THR A 212 1 O THR A 212 N VAL A 117 SHEET 3 AA4 4 THR A 186 ALA A 194 -1 N LEU A 189 O ALA A 207 SHEET 4 AA4 4 ALA A 147 ASP A 154 -1 N ASP A 154 O THR A 188 SHEET 1 AA5 3 THR A 125 GLU A 129 0 SHEET 2 AA5 3 VAL A 171 VAL A 174 -1 O ILE A 172 N VAL A 127 SHEET 3 AA5 3 PHE A 163 ILE A 165 -1 N THR A 164 O SER A 173 SHEET 1 AA6 4 ILE B 7 PRO B 10 0 SHEET 2 AA6 4 MET B 92 THR B 99 1 O THR B 97 N ILE B 7 SHEET 3 AA6 4 THR B 73 SER B 82 -1 N LEU B 76 O ILE B 94 SHEET 4 AA6 4 VAL B 34 THR B 39 -1 N SER B 37 O HIS B 79 SHEET 1 AA7 3 LYS B 19 GLN B 23 0 SHEET 2 AA7 3 TRP B 59 VAL B 62 -1 O LEU B 60 N VAL B 22 SHEET 3 AA7 3 PHE B 51 ILE B 53 -1 N ILE B 52 O LYS B 61 SHEET 1 AA8 2 GLU B 107 PHE B 108 0 SHEET 2 AA8 2 ALA B 132 THR B 133 -1 O THR B 133 N GLU B 107 SHEET 1 AA9 4 VAL B 112 MET B 118 0 SHEET 2 AA9 4 SER B 202 THR B 212 1 O VAL B 208 N PHE B 113 SHEET 3 AA9 4 THR B 186 ALA B 194 -1 N TYR B 187 O ILE B 209 SHEET 4 AA9 4 ALA B 147 ASP B 154 -1 N ASP B 154 O THR B 188 SHEET 1 AB1 3 SER B 126 GLU B 129 0 SHEET 2 AB1 3 VAL B 171 VAL B 174 -1 O ILE B 172 N VAL B 127 SHEET 3 AB1 3 PHE B 163 ILE B 165 -1 N THR B 164 O SER B 173 LINK OE2 GLU A 11 CA CA A 402 1555 1555 2.31 LINK OE1 GLU A 11 CA CA A 403 1555 1555 2.46 LINK OD1 ASP A 67 CA CA A 403 1555 1555 2.31 LINK OE1 GLU A 69 CA CA A 402 1555 1555 2.66 LINK OE2 GLU A 69 CA CA A 402 1555 1555 2.30 LINK OE1 GLU A 69 CA CA A 403 1555 1555 2.27 LINK OD1 ASP A 100 CA CA A 402 1555 1555 2.17 LINK O GLN A 101 CA CA A 402 1555 1555 2.44 LINK OD1 ASN A 102 CA CA A 401 1555 1555 2.40 LINK OD1 ASP A 103 CA CA A 402 1555 1555 2.38 LINK OD2 ASP A 103 CA CA A 403 1555 1555 2.34 LINK O ASN A 104 CA CA A 401 1555 1555 2.25 LINK OD1 ASP A 134 CA CA A 401 1555 1555 2.50 LINK OD2 ASP A 134 CA CA A 401 1555 1555 2.46 LINK OD2 ASP A 136 CA CA A 401 1555 1555 2.33 LINK OD1 ASP A 136 CA CA A 402 1555 1555 2.39 LINK O ASN A 143 CA CA A 401 1555 1555 2.32 LINK OD2 ASP A 195 CA CA A 401 1555 1555 2.45 LINK CA CA A 403 O HOH A 589 1555 1555 2.34 LINK CA CA A 403 O HOH A 664 1555 1555 2.38 LINK OE2 GLU B 11 CA CA B 402 1555 1555 2.25 LINK OE1 GLU B 11 CA CA B 403 1555 1555 2.43 LINK OD1 ASP B 67 CA CA B 403 1555 1555 2.33 LINK OE1 GLU B 69 CA CA B 402 1555 1555 2.77 LINK OE2 GLU B 69 CA CA B 402 1555 1555 2.44 LINK OE1 GLU B 69 CA CA B 403 1555 1555 2.29 LINK OD1 ASP B 100 CA CA B 402 1555 1555 2.32 LINK O GLN B 101 CA CA B 402 1555 1555 2.32 LINK OD1 ASN B 102 CA CA B 401 1555 1555 2.19 LINK OD1 ASP B 103 CA CA B 402 1555 1555 2.39 LINK OD2 ASP B 103 CA CA B 403 1555 1555 2.35 LINK O ASN B 104 CA CA B 401 1555 1555 2.28 LINK OD1 ASP B 134 CA CA B 401 1555 1555 2.62 LINK OD2 ASP B 134 CA CA B 401 1555 1555 2.31 LINK OD2 ASP B 136 CA CA B 401 1555 1555 2.38 LINK OD1 ASP B 136 CA CA B 402 1555 1555 2.21 LINK O ASN B 143 CA CA B 401 1555 1555 2.32 LINK OD2 ASP B 195 CA CA B 401 1555 1555 2.48 LINK CA CA B 403 O HOH B 524 1555 1555 2.43 LINK CA CA B 403 O HOH B 607 1555 1555 2.41 CISPEP 1 GLY A 15 PRO A 16 0 17.60 CISPEP 2 PHE A 17 PRO A 18 0 4.39 CISPEP 3 PRO A 46 PRO A 47 0 6.94 CISPEP 4 ASP A 154 PRO A 155 0 1.66 CISPEP 5 LEU A 157 PRO A 158 0 12.13 CISPEP 6 GLY B 15 PRO B 16 0 17.11 CISPEP 7 PHE B 17 PRO B 18 0 8.83 CISPEP 8 PRO B 46 PRO B 47 0 4.75 CISPEP 9 ASP B 154 PRO B 155 0 -5.25 CISPEP 10 LEU B 157 PRO B 158 0 10.99 SITE 1 AC1 6 ASN A 102 ASN A 104 ASP A 134 ASP A 136 SITE 2 AC1 6 ASN A 143 ASP A 195 SITE 1 AC2 6 GLU A 11 GLU A 69 ASP A 100 GLN A 101 SITE 2 AC2 6 ASP A 103 ASP A 136 SITE 1 AC3 6 GLU A 11 ASP A 67 GLU A 69 ASP A 103 SITE 2 AC3 6 HOH A 589 HOH A 664 SITE 1 AC4 6 ASN B 102 ASN B 104 ASP B 134 ASP B 136 SITE 2 AC4 6 ASN B 143 ASP B 195 SITE 1 AC5 6 GLU B 11 GLU B 69 ASP B 100 GLN B 101 SITE 2 AC5 6 ASP B 103 ASP B 136 SITE 1 AC6 6 GLU B 11 ASP B 67 GLU B 69 ASP B 103 SITE 2 AC6 6 HOH B 524 HOH B 607 CRYST1 120.446 76.417 73.020 90.00 109.98 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008302 0.000000 0.003019 0.00000 SCALE2 0.000000 0.013086 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014572 0.00000