HEADER ISOMERASE 18-MAY-15 4ZVI TITLE GYRASE B IN COMPLEX WITH 4,5-DIBROMOPYRROLAMIDE-BASED INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA GYRASE SUBUNIT B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, RESIDUES 16-392; COMPND 5 EC: 5.99.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: GYRB, Z5190, ECS4634; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GYRASE B, INHIBITOR, GYRB, PROTEROS BIOSTRUCTURES GMBH, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.ZIDAR,H.MACUT,T.TOMASIC,M.BRVAR,S.MONTALVAO,P.TAMMELA,T.SOLMAJER, AUTHOR 2 L.PETERLIN MASIC,J.ILAS,D.KIKELJ REVDAT 2 26-AUG-15 4ZVI 1 JRNL REVDAT 1 15-JUL-15 4ZVI 0 JRNL AUTH N.ZIDAR,H.MACUT,T.TOMASIC,M.BRVAR,S.MONTALVAO,P.TAMMELA, JRNL AUTH 2 T.SOLMAJER,L.PETERLIN MASIC,J.ILAS,D.KIKELJ JRNL TITL N-PHENYL-4,5-DIBROMOPYRROLAMIDES AND N-PHENYLINDOLAMIDES AS JRNL TITL 2 ATP COMPETITIVE DNA GYRASE B INHIBITORS: DESIGN, SYNTHESIS, JRNL TITL 3 AND EVALUATION. JRNL REF J.MED.CHEM. V. 58 6179 2015 JRNL REFN ISSN 0022-2623 JRNL PMID 26126187 JRNL DOI 10.1021/ACS.JMEDCHEM.5B00775 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 19273 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1403 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1401 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.3620 REMARK 3 BIN FREE R VALUE SET COUNT : 112 REMARK 3 BIN FREE R VALUE : 0.4070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2784 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 75 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.45000 REMARK 3 B22 (A**2) : -1.09000 REMARK 3 B33 (A**2) : -1.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.77000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.298 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.244 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.224 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.609 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2743 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2563 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3724 ; 1.099 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5843 ; 2.682 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 354 ; 5.052 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;35.017 ;24.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 429 ;12.604 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;14.126 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 426 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3170 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 621 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1425 ; 2.682 ; 4.589 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1424 ; 2.681 ; 4.588 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1776 ; 3.806 ; 7.740 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 222 REMARK 3 ORIGIN FOR THE GROUP (A): -16.6960 11.2330 14.8110 REMARK 3 T TENSOR REMARK 3 T11: 0.1349 T22: 0.3092 REMARK 3 T33: 0.1072 T12: 0.0019 REMARK 3 T13: 0.0559 T23: -0.0515 REMARK 3 L TENSOR REMARK 3 L11: 3.0167 L22: 3.6932 REMARK 3 L33: 2.8811 L12: -0.5828 REMARK 3 L13: -0.6289 L23: -1.0569 REMARK 3 S TENSOR REMARK 3 S11: 0.2665 S12: -0.1629 S13: 0.5158 REMARK 3 S21: 0.0318 S22: -0.0625 S23: 0.1293 REMARK 3 S31: -0.5908 S32: 0.0026 S33: -0.2041 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 223 A 392 REMARK 3 ORIGIN FOR THE GROUP (A): 11.4860 -8.2420 22.9160 REMARK 3 T TENSOR REMARK 3 T11: 0.0208 T22: 0.4938 REMARK 3 T33: 0.0734 T12: -0.0427 REMARK 3 T13: -0.0018 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 2.4758 L22: 2.7115 REMARK 3 L33: 2.2714 L12: -1.3843 REMARK 3 L13: 1.0662 L23: -1.2348 REMARK 3 S TENSOR REMARK 3 S11: 0.0627 S12: -0.0653 S13: -0.3184 REMARK 3 S21: -0.0825 S22: 0.0283 S23: -0.0616 REMARK 3 S31: 0.1861 S32: 0.0590 S33: -0.0910 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4ZVI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000209688. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.0-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20677 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 71.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.43500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-25% PEG3350, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.93900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.27300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.93900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.27300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 99 REMARK 465 ALA A 100 REMARK 465 GLY A 101 REMARK 465 GLY A 102 REMARK 465 LYS A 103 REMARK 465 PHE A 104 REMARK 465 ASP A 105 REMARK 465 ASP A 106 REMARK 465 ASN A 107 REMARK 465 SER A 108 REMARK 465 TYR A 109 REMARK 465 LYS A 110 REMARK 465 VAL A 111 REMARK 465 SER A 112 REMARK 465 GLY A 113 REMARK 465 GLY A 114 REMARK 465 LEU A 115 REMARK 465 HIS A 116 REMARK 465 GLY A 117 REMARK 465 GLU A 137 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LEU A 16 CG CD1 CD2 REMARK 480 ASP A 17 CG OD1 OD2 REMARK 480 LYS A 21 CD CE NZ REMARK 480 LYS A 57 CG CD CE NZ REMARK 480 ILE A 82 CD1 REMARK 480 GLU A 85 CG CD OE1 OE2 REMARK 480 GLU A 86 CG CD OE1 OE2 REMARK 480 ILE A 94 CD1 REMARK 480 VAL A 97 CG1 CG2 REMARK 480 LYS A 129 NZ REMARK 480 ILE A 134 CD1 REMARK 480 LYS A 139 CE NZ REMARK 480 VAL A 149 CG1 CG2 REMARK 480 GLN A 151 CD OE1 NE2 REMARK 480 GLU A 161 CG CD OE1 OE2 REMARK 480 GLU A 185 CD OE1 OE2 REMARK 480 LYS A 189 CD CE NZ REMARK 480 LYS A 208 CE NZ REMARK 480 LYS A 212 CE NZ REMARK 480 GLU A 219 CG CD OE1 OE2 REMARK 480 LYS A 231 NZ REMARK 480 GLU A 246 CD OE1 OE2 REMARK 480 LYS A 247 CG CD CE NZ REMARK 480 GLN A 263 CD OE1 NE2 REMARK 480 ILE A 266 CD1 REMARK 480 ARG A 291 NE CZ NH1 NH2 REMARK 480 LYS A 299 CE NZ REMARK 480 LYS A 304 CD CE NZ REMARK 480 LYS A 305 CD CE NZ REMARK 480 LYS A 307 CE NZ REMARK 480 SER A 309 OG REMARK 480 ARG A 316 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 331 CE NZ REMARK 480 GLN A 351 CD OE1 NE2 REMARK 480 LEU A 362 CD1 CD2 REMARK 480 LYS A 369 CE NZ REMARK 480 ARG A 386 CG CD NE CZ NH1 NH2 REMARK 480 ARG A 389 CZ NH1 NH2 REMARK 480 MET A 391 CG SD CE REMARK 480 THR A 392 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 178 -79.41 62.96 REMARK 500 SER A 199 -101.32 26.60 REMARK 500 HIS A 217 63.97 -159.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 4S4 A 401 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4S4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 403 DBREF 4ZVI A 16 392 UNP P0AES7 GYRB_ECO57 16 392 SEQRES 1 A 377 LEU ASP ALA VAL ARG LYS ARG PRO GLY MET TYR ILE GLY SEQRES 2 A 377 ASP THR ASP ASP GLY THR GLY LEU HIS HIS MET VAL PHE SEQRES 3 A 377 GLU VAL VAL ASP ASN ALA ILE ASP GLU ALA LEU ALA GLY SEQRES 4 A 377 HIS CYS LYS GLU ILE ILE VAL THR ILE HIS ALA ASP ASN SEQRES 5 A 377 SER VAL SER VAL GLN ASP ASP GLY ARG GLY ILE PRO THR SEQRES 6 A 377 GLY ILE HIS PRO GLU GLU GLY VAL SER ALA ALA GLU VAL SEQRES 7 A 377 ILE MET THR VAL LEU HIS ALA GLY GLY LYS PHE ASP ASP SEQRES 8 A 377 ASN SER TYR LYS VAL SER GLY GLY LEU HIS GLY VAL GLY SEQRES 9 A 377 VAL SER VAL VAL ASN ALA LEU SER GLN LYS LEU GLU LEU SEQRES 10 A 377 VAL ILE GLN ARG GLU GLY LYS ILE HIS ARG GLN ILE TYR SEQRES 11 A 377 GLU HIS GLY VAL PRO GLN ALA PRO LEU ALA VAL THR GLY SEQRES 12 A 377 GLU THR GLU LYS THR GLY THR MET VAL ARG PHE TRP PRO SEQRES 13 A 377 SER LEU GLU THR PHE THR ASN VAL THR GLU PHE GLU TYR SEQRES 14 A 377 GLU ILE LEU ALA LYS ARG LEU ARG GLU LEU SER PHE LEU SEQRES 15 A 377 ASN SER GLY VAL SER ILE ARG LEU ARG ASP LYS ARG ASP SEQRES 16 A 377 GLY LYS GLU ASP HIS PHE HIS TYR GLU GLY GLY ILE LYS SEQRES 17 A 377 ALA PHE VAL GLU TYR LEU ASN LYS ASN LYS THR PRO ILE SEQRES 18 A 377 HIS PRO ASN ILE PHE TYR PHE SER THR GLU LYS ASP GLY SEQRES 19 A 377 ILE GLY VAL GLU VAL ALA LEU GLN TRP ASN ASP GLY PHE SEQRES 20 A 377 GLN GLU ASN ILE TYR CYS PHE THR ASN ASN ILE PRO GLN SEQRES 21 A 377 ARG ASP GLY GLY THR HIS LEU ALA GLY PHE ARG ALA ALA SEQRES 22 A 377 MET THR ARG THR LEU ASN ALA TYR MET ASP LYS GLU GLY SEQRES 23 A 377 TYR SER LYS LYS ALA LYS VAL SER ALA THR GLY ASP ASP SEQRES 24 A 377 ALA ARG GLU GLY LEU ILE ALA VAL VAL SER VAL LYS VAL SEQRES 25 A 377 PRO ASP PRO LYS PHE SER SER GLN THR LYS ASP LYS LEU SEQRES 26 A 377 VAL SER SER GLU VAL LYS SER ALA VAL GLU GLN GLN MET SEQRES 27 A 377 ASN GLU LEU LEU ALA GLU TYR LEU LEU GLU ASN PRO THR SEQRES 28 A 377 ASP ALA LYS ILE VAL VAL GLY LYS ILE ILE ASP ALA ALA SEQRES 29 A 377 ARG ALA ARG GLU ALA ALA ARG ARG ALA ARG GLU MET THR HET 4S4 A 401 23 HET IOD A 402 1 HET IOD A 403 1 HETNAM 4S4 N-(4-{[(4,5-DIBROMO-1H-PYRROL-2-YL) HETNAM 2 4S4 CARBONYL]AMINO}BENZOYL)GLYCINE HETNAM IOD IODIDE ION FORMUL 2 4S4 C14 H11 BR2 N3 O4 FORMUL 3 IOD 2(I 1-) FORMUL 5 HOH *75(H2 O) HELIX 1 AA1 LEU A 16 ARG A 22 1 7 HELIX 2 AA2 ARG A 22 GLY A 28 1 7 HELIX 3 AA3 GLY A 33 GLY A 54 1 22 HELIX 4 AA4 SER A 89 VAL A 97 1 9 HELIX 5 AA5 GLY A 119 LEU A 126 1 8 HELIX 6 AA6 GLU A 183 ASN A 198 1 16 HELIX 7 AA7 GLY A 221 ASN A 230 1 10 HELIX 8 AA8 GLY A 279 GLU A 300 1 22 HELIX 9 AA9 GLY A 301 LYS A 307 1 7 HELIX 10 AB1 THR A 311 GLU A 317 1 7 HELIX 11 AB2 SER A 342 ASN A 364 1 23 HELIX 12 AB3 ASN A 364 MET A 391 1 28 SHEET 1 AA1 3 VAL A 149 PRO A 150 0 SHEET 2 AA1 3 LYS A 139 GLU A 146 -1 N GLU A 146 O VAL A 149 SHEET 3 AA1 3 ALA A 155 GLU A 159 -1 O ALA A 155 N ARG A 142 SHEET 1 AA2 8 VAL A 149 PRO A 150 0 SHEET 2 AA2 8 LYS A 139 GLU A 146 -1 N GLU A 146 O VAL A 149 SHEET 3 AA2 8 SER A 127 GLN A 135 -1 N ILE A 134 O HIS A 141 SHEET 4 AA2 8 GLY A 164 PRO A 171 -1 O ARG A 168 N GLU A 131 SHEET 5 AA2 8 VAL A 69 ASP A 73 -1 N ASP A 73 O THR A 165 SHEET 6 AA2 8 GLU A 58 ILE A 63 -1 N ILE A 60 O GLN A 72 SHEET 7 AA2 8 SER A 202 ASP A 207 1 O ARG A 206 N ILE A 63 SHEET 8 AA2 8 GLU A 213 PHE A 216 -1 O PHE A 216 N ILE A 203 SHEET 1 AA3 5 PHE A 241 LYS A 247 0 SHEET 2 AA3 5 ILE A 250 TRP A 258 -1 O VAL A 252 N THR A 245 SHEET 3 AA3 5 LEU A 319 LYS A 326 -1 O SER A 324 N GLU A 253 SHEET 4 AA3 5 ASN A 265 THR A 270 1 N PHE A 269 O VAL A 325 SHEET 5 AA3 5 ILE A 273 PRO A 274 -1 O ILE A 273 N THR A 270 SITE 1 AC1 6 ASN A 46 GLU A 50 ASP A 73 ARG A 76 SITE 2 AC1 6 ILE A 78 PRO A 79 SITE 1 AC2 2 ILE A 273 PRO A 330 SITE 1 AC3 2 GLY A 24 MET A 25 CRYST1 117.878 50.546 71.344 90.00 93.53 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008483 0.000000 0.000523 0.00000 SCALE2 0.000000 0.019784 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014043 0.00000