HEADER OXIDOREDUCTASE 18-MAY-15 4ZVY TITLE STRUCTURE OF HUMAN ALDH7A1 COMPLEXED WITH NAD+ IN SPACE GROUP P4212 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ALPHA-AASA DEHYDROGENASE,ALDEHYDE DEHYDROGENASE FAMILY 7 COMPND 5 MEMBER A1,ANTIQUITIN-1,BETAINE ALDEHYDE DEHYDROGENASE,DELTA1- COMPND 6 PIPERIDEINE-6-CARBOXYLATE DEHYDROGENASE,P6C DEHYDROGENASE; COMPND 7 EC: 1.2.1.31,1.2.1.3,1.2.1.8; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ALDH7A1, ATQ1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALDEHYDE DEHYDROGENASE, NAD, OXIDOREDUCTASE, LYSINE CATABOLISM EXPDTA X-RAY DIFFRACTION AUTHOR J.J.TANNER REVDAT 3 27-SEP-23 4ZVY 1 JRNL REMARK REVDAT 2 16-SEP-15 4ZVY 1 JRNL REVDAT 1 26-AUG-15 4ZVY 0 JRNL AUTH M.LUO,J.J.TANNER JRNL TITL STRUCTURAL BASIS OF SUBSTRATE RECOGNITION BY ALDEHYDE JRNL TITL 2 DEHYDROGENASE 7A1. JRNL REF BIOCHEMISTRY V. 54 5513 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 26260980 JRNL DOI 10.1021/ACS.BIOCHEM.5B00754 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 80601 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 3877 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 53.0916 - 5.7659 0.99 2985 154 0.1790 0.1973 REMARK 3 2 5.7659 - 4.5774 1.00 2851 144 0.1701 0.1717 REMARK 3 3 4.5774 - 3.9990 1.00 2796 143 0.1549 0.1883 REMARK 3 4 3.9990 - 3.6335 1.00 2774 138 0.1739 0.1948 REMARK 3 5 3.6335 - 3.3731 1.00 2803 142 0.1752 0.2024 REMARK 3 6 3.3731 - 3.1742 1.00 2728 156 0.1845 0.2255 REMARK 3 7 3.1742 - 3.0153 1.00 2772 134 0.1923 0.2218 REMARK 3 8 3.0153 - 2.8840 1.00 2777 132 0.1916 0.1996 REMARK 3 9 2.8840 - 2.7730 1.00 2743 130 0.1907 0.2219 REMARK 3 10 2.7730 - 2.6773 1.00 2737 130 0.1861 0.2486 REMARK 3 11 2.6773 - 2.5936 1.00 2743 152 0.1898 0.2178 REMARK 3 12 2.5936 - 2.5195 1.00 2720 150 0.1801 0.2345 REMARK 3 13 2.5195 - 2.4531 1.00 2716 142 0.1814 0.2018 REMARK 3 14 2.4531 - 2.3933 1.00 2672 166 0.1724 0.1958 REMARK 3 15 2.3933 - 2.3389 1.00 2735 138 0.1707 0.2377 REMARK 3 16 2.3389 - 2.2891 1.00 2760 127 0.1685 0.2203 REMARK 3 17 2.2891 - 2.2433 1.00 2707 135 0.1794 0.2419 REMARK 3 18 2.2433 - 2.2010 1.00 2724 139 0.1802 0.2236 REMARK 3 19 2.2010 - 2.1617 1.00 2720 133 0.1812 0.2064 REMARK 3 20 2.1617 - 2.1250 1.00 2710 136 0.1877 0.2445 REMARK 3 21 2.1250 - 2.0908 1.00 2693 133 0.1974 0.2536 REMARK 3 22 2.0908 - 2.0586 1.00 2729 139 0.1991 0.2407 REMARK 3 23 2.0586 - 2.0283 1.00 2733 123 0.2018 0.2518 REMARK 3 24 2.0283 - 1.9997 1.00 2684 123 0.2018 0.2428 REMARK 3 25 1.9997 - 1.9727 1.00 2756 121 0.2093 0.2698 REMARK 3 26 1.9727 - 1.9471 1.00 2708 139 0.2184 0.2629 REMARK 3 27 1.9471 - 1.9228 1.00 2693 134 0.2268 0.2806 REMARK 3 28 1.9228 - 1.8996 0.95 2555 144 0.2689 0.3049 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 7159 REMARK 3 ANGLE : 0.967 9756 REMARK 3 CHIRALITY : 0.039 1130 REMARK 3 PLANARITY : 0.004 1252 REMARK 3 DIHEDRAL : 13.612 2517 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 43.5436 -16.7582 -19.4435 REMARK 3 T TENSOR REMARK 3 T11: 0.1964 T22: 0.2040 REMARK 3 T33: 0.1663 T12: -0.0183 REMARK 3 T13: -0.0332 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 1.4035 L22: 1.3600 REMARK 3 L33: 0.9996 L12: 0.5640 REMARK 3 L13: -0.4023 L23: -0.2938 REMARK 3 S TENSOR REMARK 3 S11: 0.0330 S12: 0.0398 S13: 0.1889 REMARK 3 S21: -0.0317 S22: -0.0114 S23: 0.3080 REMARK 3 S31: -0.0931 S32: -0.1721 S33: -0.0190 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 30.6531 -54.2504 -21.2457 REMARK 3 T TENSOR REMARK 3 T11: 0.1490 T22: 0.1685 REMARK 3 T33: 0.1949 T12: -0.0100 REMARK 3 T13: 0.0128 T23: 0.0211 REMARK 3 L TENSOR REMARK 3 L11: 0.8752 L22: 2.5141 REMARK 3 L33: 1.0669 L12: 0.5121 REMARK 3 L13: 0.2670 L23: 0.1671 REMARK 3 S TENSOR REMARK 3 S11: 0.0454 S12: -0.0074 S13: -0.1293 REMARK 3 S21: -0.0875 S22: -0.0417 S23: -0.5197 REMARK 3 S31: 0.1083 S32: 0.1113 S33: -0.0092 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZVY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000209950. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.6 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80661 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 53.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 14.60 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 13.10 REMARK 200 R MERGE FOR SHELL (I) : 1.44500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2J6L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE RESERVOIR CONTAINED 0.1 M HEPES PH REMARK 280 7.5, 0.1 M MAGNESIUM CHLORIDE HEXAHYDRATE, AND 20% (W/V) PEG REMARK 280 3350., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 79.55550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 79.55550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 79.55550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 79.55550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 79.55550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 79.55550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 79.55550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 79.55550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 65960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 PRO A 458 REMARK 465 THR A 459 REMARK 465 SER A 460 REMARK 465 GLY A 461 REMARK 465 ALA A 462 REMARK 465 GLU A 463 REMARK 465 ILE A 464 REMARK 465 GLY A 465 REMARK 465 GLY A 466 REMARK 465 ALA A 467 REMARK 465 PHE A 468 REMARK 465 GLY A 469 REMARK 465 GLY A 470 REMARK 465 GLU A 471 REMARK 465 LYS A 472 REMARK 465 HIS A 473 REMARK 465 THR A 474 REMARK 465 GLY A 475 REMARK 465 GLY A 476 REMARK 465 GLY A 477 REMARK 465 ARG A 478 REMARK 465 GLU A 479 REMARK 465 SER A 480 REMARK 465 GLY A 481 REMARK 465 SER A 499 REMARK 465 LYS A 500 REMARK 465 ASP A 501 REMARK 465 LEU A 502 REMARK 465 PRO A 503 REMARK 465 LEU A 504 REMARK 465 ALA A 505 REMARK 465 GLN A 506 REMARK 465 GLY A 507 REMARK 465 ILE A 508 REMARK 465 LYS A 509 REMARK 465 PHE A 510 REMARK 465 GLN A 511 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 THR B 459 REMARK 465 SER B 460 REMARK 465 GLY B 461 REMARK 465 ALA B 462 REMARK 465 GLU B 463 REMARK 465 ILE B 464 REMARK 465 GLY B 465 REMARK 465 GLY B 466 REMARK 465 ALA B 467 REMARK 465 PHE B 468 REMARK 465 GLY B 469 REMARK 465 GLY B 470 REMARK 465 GLU B 471 REMARK 465 LYS B 472 REMARK 465 HIS B 473 REMARK 465 THR B 474 REMARK 465 GLY B 475 REMARK 465 GLY B 476 REMARK 465 GLY B 477 REMARK 465 ARG B 478 REMARK 465 GLU B 479 REMARK 465 SER B 480 REMARK 465 GLY B 481 REMARK 465 LYS B 500 REMARK 465 ASP B 501 REMARK 465 LEU B 502 REMARK 465 PRO B 503 REMARK 465 LEU B 504 REMARK 465 ALA B 505 REMARK 465 GLN B 506 REMARK 465 GLY B 507 REMARK 465 ILE B 508 REMARK 465 LYS B 509 REMARK 465 PHE B 510 REMARK 465 GLN B 511 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 62 CG CD OE1 OE2 REMARK 470 GLU A 69 CD OE1 OE2 REMARK 470 LYS A 81 CD CE NZ REMARK 470 GLU A 144 CG CD OE1 OE2 REMARK 470 ARG A 145 CG CD NE CZ NH1 NH2 REMARK 470 SER A 146 OG REMARK 470 GLN A 249 CG CD OE1 NE2 REMARK 470 ASN A 272 CG OD1 ND2 REMARK 470 GLU A 279 CG CD OE1 OE2 REMARK 470 PHE A 292 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 312 CG CD OE1 OE2 REMARK 470 LYS A 323 CG CD CE NZ REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 GLN A 328 CG CD OE1 NE2 REMARK 470 ARG A 330 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 336 CG OD1 OD2 REMARK 470 ASN A 338 CG OD1 ND2 REMARK 470 VAL A 339 CG1 CG2 REMARK 470 LEU A 340 CG CD1 CD2 REMARK 470 GLN A 348 CG CD OE1 NE2 REMARK 470 GLU A 358 CG CD OE1 OE2 REMARK 470 GLU A 359 CG CD OE1 OE2 REMARK 470 LYS A 362 CG CD CE NZ REMARK 470 GLU A 363 CG CD OE1 OE2 REMARK 470 LEU A 389 CG CD1 CD2 REMARK 470 ASP A 392 CG OD1 OD2 REMARK 470 SER A 394 OG REMARK 470 ILE A 395 CG1 CG2 CD1 REMARK 470 HIS A 397 CG ND1 CD2 CE1 NE2 REMARK 470 THR A 398 OG1 CG2 REMARK 470 GLU A 399 CG CD OE1 OE2 REMARK 470 THR A 400 OG1 CG2 REMARK 470 LYS A 409 CG CD CE NZ REMARK 470 LYS A 411 CG CD CE NZ REMARK 470 GLU A 414 CG CD OE1 OE2 REMARK 470 ASN A 421 CG OD1 ND2 REMARK 470 GLU A 422 CG CD OE1 OE2 REMARK 470 LYS A 424 CG CD CE NZ REMARK 470 GLN A 425 CG CD OE1 NE2 REMARK 470 TYR A 498 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 81 CE NZ REMARK 470 GLU B 144 CG CD OE1 OE2 REMARK 470 ARG B 145 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 279 CG CD OE1 OE2 REMARK 470 HIS B 311 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 312 CG CD OE1 OE2 REMARK 470 ASP B 316 CG OD1 OD2 REMARK 470 ASN B 320 CG OD1 ND2 REMARK 470 LYS B 323 CG CD CE NZ REMARK 470 LYS B 324 CG CD CE NZ REMARK 470 GLN B 348 CG CD OE1 NE2 REMARK 470 GLU B 358 CG CD OE1 OE2 REMARK 470 GLU B 359 CG CD OE1 OE2 REMARK 470 LYS B 362 CG CD CE NZ REMARK 470 GLU B 363 CG CD OE1 OE2 REMARK 470 LYS B 372 CG CD CE NZ REMARK 470 SER B 394 OG REMARK 470 LYS B 409 CG CD CE NZ REMARK 470 LYS B 411 CG CD CE NZ REMARK 470 ASN B 412 CG OD1 ND2 REMARK 470 GLU B 414 CG CD OE1 OE2 REMARK 470 GLU B 415 CG CD OE1 OE2 REMARK 470 TRP B 419 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 419 CZ3 CH2 REMARK 470 GLU B 422 CG CD OE1 OE2 REMARK 470 VAL B 423 CG1 CG2 REMARK 470 LYS B 424 CG CD CE NZ REMARK 470 GLN B 425 CG CD OE1 NE2 REMARK 470 LYS B 434 CG CD CE NZ REMARK 470 ARG B 441 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 498 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 379 50.63 -104.65 REMARK 500 ASN B 28 30.22 -140.57 REMARK 500 ALA B 50 -179.92 -172.22 REMARK 500 ASN B 379 58.20 -106.51 REMARK 500 LYS B 411 -66.12 -92.69 REMARK 500 GLN B 425 70.29 51.50 REMARK 500 ASP B 435 106.43 -59.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAD B 601 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD B 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ZVW RELATED DB: PDB REMARK 900 RELATED ID: 4ZVX RELATED DB: PDB DBREF 4ZVY A 1 511 UNP P49419 AL7A1_HUMAN 1 511 DBREF 4ZVY B 1 511 UNP P49419 AL7A1_HUMAN 1 511 SEQADV 4ZVY GLY A -1 UNP P49419 EXPRESSION TAG SEQADV 4ZVY HIS A 0 UNP P49419 EXPRESSION TAG SEQADV 4ZVY GLY B -1 UNP P49419 EXPRESSION TAG SEQADV 4ZVY HIS B 0 UNP P49419 EXPRESSION TAG SEQRES 1 A 513 GLY HIS MET SER THR LEU LEU ILE ASN GLN PRO GLN TYR SEQRES 2 A 513 ALA TRP LEU LYS GLU LEU GLY LEU ARG GLU GLU ASN GLU SEQRES 3 A 513 GLY VAL TYR ASN GLY SER TRP GLY GLY ARG GLY GLU VAL SEQRES 4 A 513 ILE THR THR TYR CYS PRO ALA ASN ASN GLU PRO ILE ALA SEQRES 5 A 513 ARG VAL ARG GLN ALA SER VAL ALA ASP TYR GLU GLU THR SEQRES 6 A 513 VAL LYS LYS ALA ARG GLU ALA TRP LYS ILE TRP ALA ASP SEQRES 7 A 513 ILE PRO ALA PRO LYS ARG GLY GLU ILE VAL ARG GLN ILE SEQRES 8 A 513 GLY ASP ALA LEU ARG GLU LYS ILE GLN VAL LEU GLY SER SEQRES 9 A 513 LEU VAL SER LEU GLU MET GLY LYS ILE LEU VAL GLU GLY SEQRES 10 A 513 VAL GLY GLU VAL GLN GLU TYR VAL ASP ILE CYS ASP TYR SEQRES 11 A 513 ALA VAL GLY LEU SER ARG MET ILE GLY GLY PRO ILE LEU SEQRES 12 A 513 PRO SER GLU ARG SER GLY HIS ALA LEU ILE GLU GLN TRP SEQRES 13 A 513 ASN PRO VAL GLY LEU VAL GLY ILE ILE THR ALA PHE ASN SEQRES 14 A 513 PHE PRO VAL ALA VAL TYR GLY TRP ASN ASN ALA ILE ALA SEQRES 15 A 513 MET ILE CYS GLY ASN VAL CYS LEU TRP LYS GLY ALA PRO SEQRES 16 A 513 THR THR SER LEU ILE SER VAL ALA VAL THR LYS ILE ILE SEQRES 17 A 513 ALA LYS VAL LEU GLU ASP ASN LYS LEU PRO GLY ALA ILE SEQRES 18 A 513 CYS SER LEU THR CYS GLY GLY ALA ASP ILE GLY THR ALA SEQRES 19 A 513 MET ALA LYS ASP GLU ARG VAL ASN LEU LEU SER PHE THR SEQRES 20 A 513 GLY SER THR GLN VAL GLY LYS GLN VAL GLY LEU MET VAL SEQRES 21 A 513 GLN GLU ARG PHE GLY ARG SER LEU LEU GLU LEU GLY GLY SEQRES 22 A 513 ASN ASN ALA ILE ILE ALA PHE GLU ASP ALA ASP LEU SER SEQRES 23 A 513 LEU VAL VAL PRO SER ALA LEU PHE ALA ALA VAL GLY THR SEQRES 24 A 513 ALA GLY GLN ARG CYS THR THR ALA ARG ARG LEU PHE ILE SEQRES 25 A 513 HIS GLU SER ILE HIS ASP GLU VAL VAL ASN ARG LEU LYS SEQRES 26 A 513 LYS ALA TYR ALA GLN ILE ARG VAL GLY ASN PRO TRP ASP SEQRES 27 A 513 PRO ASN VAL LEU TYR GLY PRO LEU HIS THR LYS GLN ALA SEQRES 28 A 513 VAL SER MET PHE LEU GLY ALA VAL GLU GLU ALA LYS LYS SEQRES 29 A 513 GLU GLY GLY THR VAL VAL TYR GLY GLY LYS VAL MET ASP SEQRES 30 A 513 ARG PRO GLY ASN TYR VAL GLU PRO THR ILE VAL THR GLY SEQRES 31 A 513 LEU GLY HIS ASP ALA SER ILE ALA HIS THR GLU THR PHE SEQRES 32 A 513 ALA PRO ILE LEU TYR VAL PHE LYS PHE LYS ASN GLU GLU SEQRES 33 A 513 GLU VAL PHE ALA TRP ASN ASN GLU VAL LYS GLN GLY LEU SEQRES 34 A 513 SER SER SER ILE PHE THR LYS ASP LEU GLY ARG ILE PHE SEQRES 35 A 513 ARG TRP LEU GLY PRO LYS GLY SER ASP CYS GLY ILE VAL SEQRES 36 A 513 ASN VAL ASN ILE PRO THR SER GLY ALA GLU ILE GLY GLY SEQRES 37 A 513 ALA PHE GLY GLY GLU LYS HIS THR GLY GLY GLY ARG GLU SEQRES 38 A 513 SER GLY SER ASP ALA TRP LYS GLN TYR MET ARG ARG SER SEQRES 39 A 513 THR CYS THR ILE ASN TYR SER LYS ASP LEU PRO LEU ALA SEQRES 40 A 513 GLN GLY ILE LYS PHE GLN SEQRES 1 B 513 GLY HIS MET SER THR LEU LEU ILE ASN GLN PRO GLN TYR SEQRES 2 B 513 ALA TRP LEU LYS GLU LEU GLY LEU ARG GLU GLU ASN GLU SEQRES 3 B 513 GLY VAL TYR ASN GLY SER TRP GLY GLY ARG GLY GLU VAL SEQRES 4 B 513 ILE THR THR TYR CYS PRO ALA ASN ASN GLU PRO ILE ALA SEQRES 5 B 513 ARG VAL ARG GLN ALA SER VAL ALA ASP TYR GLU GLU THR SEQRES 6 B 513 VAL LYS LYS ALA ARG GLU ALA TRP LYS ILE TRP ALA ASP SEQRES 7 B 513 ILE PRO ALA PRO LYS ARG GLY GLU ILE VAL ARG GLN ILE SEQRES 8 B 513 GLY ASP ALA LEU ARG GLU LYS ILE GLN VAL LEU GLY SER SEQRES 9 B 513 LEU VAL SER LEU GLU MET GLY LYS ILE LEU VAL GLU GLY SEQRES 10 B 513 VAL GLY GLU VAL GLN GLU TYR VAL ASP ILE CYS ASP TYR SEQRES 11 B 513 ALA VAL GLY LEU SER ARG MET ILE GLY GLY PRO ILE LEU SEQRES 12 B 513 PRO SER GLU ARG SER GLY HIS ALA LEU ILE GLU GLN TRP SEQRES 13 B 513 ASN PRO VAL GLY LEU VAL GLY ILE ILE THR ALA PHE ASN SEQRES 14 B 513 PHE PRO VAL ALA VAL TYR GLY TRP ASN ASN ALA ILE ALA SEQRES 15 B 513 MET ILE CYS GLY ASN VAL CYS LEU TRP LYS GLY ALA PRO SEQRES 16 B 513 THR THR SER LEU ILE SER VAL ALA VAL THR LYS ILE ILE SEQRES 17 B 513 ALA LYS VAL LEU GLU ASP ASN LYS LEU PRO GLY ALA ILE SEQRES 18 B 513 CYS SER LEU THR CYS GLY GLY ALA ASP ILE GLY THR ALA SEQRES 19 B 513 MET ALA LYS ASP GLU ARG VAL ASN LEU LEU SER PHE THR SEQRES 20 B 513 GLY SER THR GLN VAL GLY LYS GLN VAL GLY LEU MET VAL SEQRES 21 B 513 GLN GLU ARG PHE GLY ARG SER LEU LEU GLU LEU GLY GLY SEQRES 22 B 513 ASN ASN ALA ILE ILE ALA PHE GLU ASP ALA ASP LEU SER SEQRES 23 B 513 LEU VAL VAL PRO SER ALA LEU PHE ALA ALA VAL GLY THR SEQRES 24 B 513 ALA GLY GLN ARG CYS THR THR ALA ARG ARG LEU PHE ILE SEQRES 25 B 513 HIS GLU SER ILE HIS ASP GLU VAL VAL ASN ARG LEU LYS SEQRES 26 B 513 LYS ALA TYR ALA GLN ILE ARG VAL GLY ASN PRO TRP ASP SEQRES 27 B 513 PRO ASN VAL LEU TYR GLY PRO LEU HIS THR LYS GLN ALA SEQRES 28 B 513 VAL SER MET PHE LEU GLY ALA VAL GLU GLU ALA LYS LYS SEQRES 29 B 513 GLU GLY GLY THR VAL VAL TYR GLY GLY LYS VAL MET ASP SEQRES 30 B 513 ARG PRO GLY ASN TYR VAL GLU PRO THR ILE VAL THR GLY SEQRES 31 B 513 LEU GLY HIS ASP ALA SER ILE ALA HIS THR GLU THR PHE SEQRES 32 B 513 ALA PRO ILE LEU TYR VAL PHE LYS PHE LYS ASN GLU GLU SEQRES 33 B 513 GLU VAL PHE ALA TRP ASN ASN GLU VAL LYS GLN GLY LEU SEQRES 34 B 513 SER SER SER ILE PHE THR LYS ASP LEU GLY ARG ILE PHE SEQRES 35 B 513 ARG TRP LEU GLY PRO LYS GLY SER ASP CYS GLY ILE VAL SEQRES 36 B 513 ASN VAL ASN ILE PRO THR SER GLY ALA GLU ILE GLY GLY SEQRES 37 B 513 ALA PHE GLY GLY GLU LYS HIS THR GLY GLY GLY ARG GLU SEQRES 38 B 513 SER GLY SER ASP ALA TRP LYS GLN TYR MET ARG ARG SER SEQRES 39 B 513 THR CYS THR ILE ASN TYR SER LYS ASP LEU PRO LEU ALA SEQRES 40 B 513 GLN GLY ILE LYS PHE GLN HET NAD B 601 23 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 3 NAD C21 H27 N7 O14 P2 FORMUL 4 HOH *385(H2 O) HELIX 1 AA1 LEU A 4 GLY A 18 5 15 HELIX 2 AA2 SER A 56 ALA A 75 1 20 HELIX 3 AA3 PRO A 78 LYS A 96 1 19 HELIX 4 AA4 LYS A 96 MET A 108 1 13 HELIX 5 AA5 ILE A 111 SER A 133 1 23 HELIX 6 AA6 VAL A 170 CYS A 183 1 14 HELIX 7 AA7 ALA A 192 THR A 194 5 3 HELIX 8 AA8 THR A 195 ASN A 213 1 19 HELIX 9 AA9 PRO A 216 ALA A 218 5 3 HELIX 10 AB1 GLY A 226 ASP A 236 1 11 HELIX 11 AB2 SER A 247 ARG A 261 1 15 HELIX 12 AB3 ASP A 282 GLY A 296 1 15 HELIX 13 AB4 THR A 297 GLN A 300 5 4 HELIX 14 AB5 ILE A 314 GLN A 328 1 15 HELIX 15 AB6 THR A 346 LYS A 362 1 17 HELIX 16 AB7 ALA A 393 THR A 398 1 6 HELIX 17 AB8 ASN A 412 GLU A 422 1 11 HELIX 18 AB9 ASP A 435 GLY A 444 1 10 HELIX 19 AC1 ASP A 483 GLN A 487 5 5 HELIX 20 AC2 LEU B 4 GLY B 18 5 15 HELIX 21 AC3 SER B 56 ALA B 75 1 20 HELIX 22 AC4 PRO B 78 LYS B 96 1 19 HELIX 23 AC5 LYS B 96 MET B 108 1 13 HELIX 24 AC6 ILE B 111 SER B 133 1 23 HELIX 25 AC7 ARG B 134 ILE B 136 5 3 HELIX 26 AC8 VAL B 170 CYS B 183 1 14 HELIX 27 AC9 ALA B 192 THR B 194 5 3 HELIX 28 AD1 THR B 195 ASN B 213 1 19 HELIX 29 AD2 PRO B 216 ALA B 218 5 3 HELIX 30 AD3 GLY B 226 ASP B 236 1 11 HELIX 31 AD4 SER B 247 ARG B 261 1 15 HELIX 32 AD5 ASP B 282 GLY B 296 1 15 HELIX 33 AD6 THR B 297 GLN B 300 5 4 HELIX 34 AD7 ILE B 314 GLN B 328 1 15 HELIX 35 AD8 THR B 346 GLU B 363 1 18 HELIX 36 AD9 ALA B 393 THR B 398 1 6 HELIX 37 AE1 ASN B 412 ASN B 421 1 10 HELIX 38 AE2 ASP B 435 GLY B 444 1 10 HELIX 39 AE3 ASP B 483 GLN B 487 5 5 SHEET 1 AA1 3 GLU A 22 GLU A 24 0 SHEET 2 AA1 3 PRO A 48 ARG A 53 1 O ARG A 53 N ASN A 23 SHEET 3 AA1 3 VAL A 37 TYR A 41 -1 N THR A 40 O ILE A 49 SHEET 1 AA2 7 TRP A 31 GLY A 32 0 SHEET 2 AA2 7 VAL A 26 TYR A 27 -1 N VAL A 26 O GLY A 32 SHEET 3 AA2 7 CYS A 220 THR A 223 -1 O LEU A 222 N TYR A 27 SHEET 4 AA2 7 VAL A 186 LYS A 190 1 N TRP A 189 O THR A 223 SHEET 5 AA2 7 LEU A 159 ILE A 163 1 N ILE A 162 O LEU A 188 SHEET 6 AA2 7 LEU A 241 THR A 245 1 O SER A 243 N ILE A 163 SHEET 7 AA2 7 ARG A 264 GLU A 268 1 O LEU A 266 N PHE A 244 SHEET 1 AA310 ILE A 140 PRO A 142 0 SHEET 2 AA310 HIS A 148 PRO A 156 -1 O LEU A 150 N LEU A 141 SHEET 3 AA310 MET A 489 ASN A 497 -1 O ARG A 490 N ASN A 155 SHEET 4 AA310 ILE B 452 VAL B 455 1 O VAL B 455 N THR A 495 SHEET 5 AA310 SER B 428 PHE B 432 1 N SER B 429 O ASN B 454 SHEET 6 AA310 ASN B 273 ALA B 277 1 N ILE B 276 O SER B 430 SHEET 7 AA310 ARG B 307 HIS B 311 1 O PHE B 309 N ILE B 275 SHEET 8 AA310 ILE B 404 PHE B 410 1 O PHE B 408 N ILE B 310 SHEET 9 AA310 THR B 384 THR B 387 1 N VAL B 386 O VAL B 407 SHEET 10 AA310 THR B 366 TYR B 369 -1 N THR B 366 O THR B 387 SHEET 1 AA410 THR A 366 TYR A 369 0 SHEET 2 AA410 THR A 384 THR A 387 -1 O THR A 387 N THR A 366 SHEET 3 AA410 ILE A 404 PHE A 410 1 O LEU A 405 N THR A 384 SHEET 4 AA410 ARG A 307 HIS A 311 1 N LEU A 308 O TYR A 406 SHEET 5 AA410 ASN A 273 ALA A 277 1 N ILE A 275 O PHE A 309 SHEET 6 AA410 SER A 428 PHE A 432 1 O SER A 430 N ILE A 276 SHEET 7 AA410 ILE A 452 VAL A 455 1 O ASN A 454 N SER A 429 SHEET 8 AA410 MET B 489 ASN B 497 1 O THR B 495 N VAL A 455 SHEET 9 AA410 HIS B 148 PRO B 156 -1 N ASN B 155 O ARG B 490 SHEET 10 AA410 ILE B 140 PRO B 142 -1 N LEU B 141 O LEU B 150 SHEET 1 AA5 3 GLU B 22 GLU B 24 0 SHEET 2 AA5 3 PRO B 48 ARG B 53 1 O ARG B 53 N ASN B 23 SHEET 3 AA5 3 VAL B 37 TYR B 41 -1 N THR B 40 O ILE B 49 SHEET 1 AA6 7 TRP B 31 GLY B 32 0 SHEET 2 AA6 7 VAL B 26 TYR B 27 -1 N VAL B 26 O GLY B 32 SHEET 3 AA6 7 CYS B 220 THR B 223 -1 O LEU B 222 N TYR B 27 SHEET 4 AA6 7 VAL B 186 LYS B 190 1 N TRP B 189 O THR B 223 SHEET 5 AA6 7 LEU B 159 ILE B 163 1 N ILE B 162 O LEU B 188 SHEET 6 AA6 7 LEU B 241 THR B 245 1 O SER B 243 N GLY B 161 SHEET 7 AA6 7 ARG B 264 GLU B 268 1 O LEU B 266 N PHE B 244 SITE 1 AC1 14 ILE B 163 THR B 164 LYS B 190 GLY B 191 SITE 2 AC1 14 ALA B 192 PRO B 193 ALA B 227 GLY B 230 SITE 3 AC1 14 THR B 231 PHE B 244 SER B 247 VAL B 250 SITE 4 AC1 14 VAL B 254 HOH B 726 CRYST1 159.111 159.111 79.670 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006285 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006285 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012552 0.00000