HEADER HYDROLASE 21-MAY-15 4ZY9 TITLE X-RAY CRYSTAL STRUCTURE OF SELENOMETHIONINE-LABELLED V110M MUTANT OF TITLE 2 CHITOSAN-BINDING MODULE 1 DERIVED FROM CHITOSANASE/GLUCANASE FROM TITLE 3 PAENIBACILLUS SP. IK-5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCANASE/CHITOSANASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 530-659; COMPND 5 EC: 3.2.1.4, 3.2.1.132; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PAENIBACILLUS FUKUINENSIS; SOURCE 3 ORGANISM_TAXID: 170835; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 OTHER_DETAILS: PAENIBACILLUS FUKUINENSIS HAS BEEN RENAMED TO SOURCE 7 PAENIBACILLUS SP. IK-5. KEYWDS CHITOSAN, CBM32, CHITOSANASE/GLUCANASE, B-SANDWICH, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.SHINYA,H.OI,Y.KITAOKU,T.OHNUMA,T.NUMATA,T.FUKAMIZO REVDAT 3 19-FEB-20 4ZY9 1 JRNL REMARK REVDAT 2 20-APR-16 4ZY9 1 JRNL REVDAT 1 13-APR-16 4ZY9 0 JRNL AUTH S.SHINYA,S.NISHIMURA,Y.KITAOKU,T.NUMATA,H.KIMOTO,H.KUSAOKE, JRNL AUTH 2 T.OHNUMA,T.FUKAMIZO JRNL TITL MECHANISM OF CHITOSAN RECOGNITION BY CBM32 JRNL TITL 2 CARBOHYDRATE-BINDING MODULES FROM A PAENIBACILLUS SP. IK-5 JRNL TITL 3 CHITOSANASE/GLUCANASE JRNL REF BIOCHEM.J. V. 473 1085 2016 JRNL REFN ESSN 1470-8728 JRNL PMID 26936968 JRNL DOI 10.1042/BCJ20160045 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 75932 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1994 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5374 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2056 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 564 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.31000 REMARK 3 B22 (A**2) : -0.10000 REMARK 3 B33 (A**2) : -0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.33000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.052 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.058 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.040 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.846 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2260 ; 0.030 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1989 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3121 ; 2.466 ; 1.898 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4580 ; 1.029 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 305 ; 7.639 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;30.703 ;23.704 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 321 ;11.338 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;24.160 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 345 ; 0.155 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2697 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 584 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1125 ; 1.272 ; 0.901 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1122 ; 1.270 ; 0.900 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1414 ; 1.762 ; 1.355 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1415 ; 1.762 ; 1.355 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1135 ; 1.670 ; 0.996 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1136 ; 1.669 ; 0.996 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1689 ; 2.388 ; 1.452 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3241 ; 5.465 ;10.056 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2818 ; 4.852 ; 8.375 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4ZY9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000210076. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97865 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78378 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.22200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM FLUORIDE, PEG 3350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.66450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 MSE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 206 O HOH B 250 1.13 REMARK 500 O HOH B 204 O HOH B 263 1.22 REMARK 500 O HOH A 300 O HOH A 339 1.31 REMARK 500 O HOH B 258 O HOH B 333 1.37 REMARK 500 O HOH A 320 O HOH A 399 1.42 REMARK 500 O HOH A 213 O HOH A 394 1.52 REMARK 500 O HOH B 227 O HOH B 252 1.57 REMARK 500 O HOH B 220 O HOH B 360 1.57 REMARK 500 O HOH A 224 O HOH A 423 1.57 REMARK 500 O HOH A 388 O HOH A 472 1.57 REMARK 500 O HOH B 237 O HOH B 359 1.62 REMARK 500 O HOH B 276 O HOH B 299 1.63 REMARK 500 O GLY B 93 O HOH B 201 1.67 REMARK 500 O HOH A 285 O HOH A 407 1.68 REMARK 500 OD2 ASP B 92 O HOH B 202 1.69 REMARK 500 O HOH A 451 O HOH B 411 1.73 REMARK 500 O HOH A 246 O HOH A 268 1.75 REMARK 500 O HOH A 201 O HOH A 313 1.86 REMARK 500 O HOH A 322 O HOH A 343 1.92 REMARK 500 O HOH A 430 O HOH B 425 1.92 REMARK 500 OD1 ASN A 74 O HOH A 201 1.94 REMARK 500 OG SER A 50 O HOH A 201 1.95 REMARK 500 O HOH A 427 O HOH B 398 1.96 REMARK 500 O HOH B 333 O HOH B 439 1.97 REMARK 500 NE2 GLN B 71 O HOH B 203 1.98 REMARK 500 O HOH B 272 O HOH B 387 2.02 REMARK 500 O HOH A 434 O HOH B 398 2.03 REMARK 500 O HOH B 402 O HOH B 448 2.04 REMARK 500 O HOH A 210 O HOH A 399 2.04 REMARK 500 O GLU B 61 O HOH B 204 2.05 REMARK 500 O HOH B 289 O HOH B 399 2.06 REMARK 500 OD1 ASN B 74 O HOH B 205 2.07 REMARK 500 O HOH B 384 O HOH B 437 2.07 REMARK 500 O HOH A 428 O HOH A 482 2.08 REMARK 500 O HOH B 271 O HOH B 417 2.08 REMARK 500 O ASN B 74 O HOH B 205 2.09 REMARK 500 ND2 ASN A 74 O HOH A 201 2.10 REMARK 500 O HOH A 209 O HOH A 403 2.10 REMARK 500 O HOH A 212 O HOH A 402 2.11 REMARK 500 O HOH A 333 O HOH B 366 2.11 REMARK 500 O GLY B 120 O HOH B 206 2.11 REMARK 500 O HOH B 390 O HOH B 413 2.11 REMARK 500 O HOH A 379 O HOH A 425 2.12 REMARK 500 O HOH B 383 O HOH B 460 2.13 REMARK 500 O HOH B 398 O HOH B 450 2.16 REMARK 500 O HOH B 201 O HOH B 356 2.17 REMARK 500 O HOH A 372 O HOH A 376 2.18 REMARK 500 O HOH A 250 O HOH A 423 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 258 O HOH A 421 2555 1.48 REMARK 500 O HOH B 231 O HOH B 297 1655 1.93 REMARK 500 O HOH A 368 O HOH A 425 2545 1.96 REMARK 500 O HOH A 485 O HOH B 460 2545 2.08 REMARK 500 O HOH A 477 O HOH B 465 2545 2.11 REMARK 500 O HOH A 489 O HOH B 446 2646 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 116 C GLY A 116 O 0.118 REMARK 500 TYR A 129 CZ TYR A 129 CE2 -0.087 REMARK 500 THR B 83 N THR B 83 CA -0.125 REMARK 500 GLY B 93 N GLY B 93 CA -0.126 REMARK 500 TRP B 124 CE3 TRP B 124 CZ3 0.109 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 22 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 92 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 103 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 115 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 TYR A 129 CB - CG - CD1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ASP B 25 CB - CG - OD1 ANGL. DEV. = 9.5 DEGREES REMARK 500 SER B 28 CB - CA - C ANGL. DEV. = -13.1 DEGREES REMARK 500 GLU B 36 CG - CD - OE1 ANGL. DEV. = -12.3 DEGREES REMARK 500 ARG B 109 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG B 115 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 PHE B 126 CB - CG - CD1 ANGL. DEV. = 4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 119 -127.64 -100.55 REMARK 500 TYR B 119 -128.48 -99.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER B 73 -11.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 491 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A 492 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH B 463 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH B 464 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH B 465 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH B 466 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH B 467 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH B 468 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH B 469 DISTANCE = 6.86 ANGSTROMS REMARK 525 HOH B 470 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH B 471 DISTANCE = 7.33 ANGSTROMS REMARK 525 HOH B 472 DISTANCE = 7.93 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2RV9 RELATED DB: PDB REMARK 900 2RV9 CONTAINS THE NMR STRUCTURE OF THE SAME PROTEIN MOLECULE. REMARK 900 RELATED ID: 2RVA RELATED DB: PDB REMARK 900 2RVA CONTAINS THE NMR STRUCTURE OF CHITONSAN-BINDING MODULE DERIVED REMARK 900 FROM THE SAME ENZYME. REMARK 900 RELATED ID: 4ZXE RELATED DB: PDB REMARK 900 4ZXE CONTAINS THE X-RAY CRYSTAL STRUCTURE OF THE SAME PROTEIN REMARK 900 MOLECULE WITHOUT MUTATION. REMARK 900 RELATED ID: 4ZZ5 RELATED DB: PDB REMARK 900 4ZZ5 CONTAINS THE X-RAY CRYSTAL STRUCTURE OF CHITOSAN-BINDING REMARK 900 MODULE DERIVED FROM THE SAME ENZYME. REMARK 900 RELATED ID: 4ZZ8 RELATED DB: PDB REMARK 900 4ZZ8 CONTAINS THE X-RAY CRYSTAL STRUCTURE OF CHITOSAN-BINDING REMARK 900 MODULE COMPLEXED WITH CHITOTRIOSE DERIVED FROM THE SAME ENZYME. DBREF 4ZY9 A 1 130 UNP Q93IE7 Q93IE7_9BACL 530 659 DBREF 4ZY9 B 1 130 UNP Q93IE7 Q93IE7_9BACL 530 659 SEQADV 4ZY9 MSE A -6 UNP Q93IE7 EXPRESSION TAG SEQADV 4ZY9 HIS A -5 UNP Q93IE7 EXPRESSION TAG SEQADV 4ZY9 HIS A -4 UNP Q93IE7 EXPRESSION TAG SEQADV 4ZY9 HIS A -3 UNP Q93IE7 EXPRESSION TAG SEQADV 4ZY9 HIS A -2 UNP Q93IE7 EXPRESSION TAG SEQADV 4ZY9 HIS A -1 UNP Q93IE7 EXPRESSION TAG SEQADV 4ZY9 HIS A 0 UNP Q93IE7 EXPRESSION TAG SEQADV 4ZY9 MSE A 110 UNP Q93IE7 VAL 639 ENGINEERED MUTATION SEQADV 4ZY9 MSE B -6 UNP Q93IE7 EXPRESSION TAG SEQADV 4ZY9 HIS B -5 UNP Q93IE7 EXPRESSION TAG SEQADV 4ZY9 HIS B -4 UNP Q93IE7 EXPRESSION TAG SEQADV 4ZY9 HIS B -3 UNP Q93IE7 EXPRESSION TAG SEQADV 4ZY9 HIS B -2 UNP Q93IE7 EXPRESSION TAG SEQADV 4ZY9 HIS B -1 UNP Q93IE7 EXPRESSION TAG SEQADV 4ZY9 HIS B 0 UNP Q93IE7 EXPRESSION TAG SEQADV 4ZY9 MSE B 110 UNP Q93IE7 VAL 639 ENGINEERED MUTATION SEQRES 1 A 137 MSE HIS HIS HIS HIS HIS HIS ASN LEU ALA LEU ASN LYS SEQRES 2 A 137 THR ALA THR ALA SER SER ILE GLU GLY ALA GLY PHE GLU SEQRES 3 A 137 ALA SER ARG ALA PHE ASP GLY SER SER THR THR ARG TRP SEQRES 4 A 137 ALA SER ALA GLU GLY VAL ASP PRO GLN TRP ILE TYR VAL SEQRES 5 A 137 ASN LEU GLY SER SER GLN THR VAL ASN ARG VAL LYS LEU SEQRES 6 A 137 ASN TRP GLU ALA ALA TYR ALA SER SER TYR THR ILE GLN SEQRES 7 A 137 VAL SER ASN ASP SER GLY THR PRO THR ASN TRP THR THR SEQRES 8 A 137 VAL TYR THR THR THR THR GLY ASP GLY GLY ILE ASP ASP SEQRES 9 A 137 ILE THR PHE THR ALA ARG THR ALA LYS TYR VAL ARG MSE SEQRES 10 A 137 HIS GLY THR VAL ARG GLY THR PRO TYR GLY TYR SER LEU SEQRES 11 A 137 TRP GLU PHE GLU VAL TYR GLY SEQRES 1 B 137 MSE HIS HIS HIS HIS HIS HIS ASN LEU ALA LEU ASN LYS SEQRES 2 B 137 THR ALA THR ALA SER SER ILE GLU GLY ALA GLY PHE GLU SEQRES 3 B 137 ALA SER ARG ALA PHE ASP GLY SER SER THR THR ARG TRP SEQRES 4 B 137 ALA SER ALA GLU GLY VAL ASP PRO GLN TRP ILE TYR VAL SEQRES 5 B 137 ASN LEU GLY SER SER GLN THR VAL ASN ARG VAL LYS LEU SEQRES 6 B 137 ASN TRP GLU ALA ALA TYR ALA SER SER TYR THR ILE GLN SEQRES 7 B 137 VAL SER ASN ASP SER GLY THR PRO THR ASN TRP THR THR SEQRES 8 B 137 VAL TYR THR THR THR THR GLY ASP GLY GLY ILE ASP ASP SEQRES 9 B 137 ILE THR PHE THR ALA ARG THR ALA LYS TYR VAL ARG MSE SEQRES 10 B 137 HIS GLY THR VAL ARG GLY THR PRO TYR GLY TYR SER LEU SEQRES 11 B 137 TRP GLU PHE GLU VAL TYR GLY HET MSE A 110 8 HET MSE B 110 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 3 HOH *564(H2 O) HELIX 1 AA1 GLU A 19 ASP A 25 5 7 HELIX 2 AA2 GLU B 19 ASP B 25 5 7 SHEET 1 AA1 4 THR A 7 ALA A 10 0 SHEET 2 AA1 4 GLN A 41 TRP A 60 -1 O TYR A 44 N THR A 9 SHEET 3 AA1 4 SER A 122 TYR A 129 -1 O GLU A 127 N LYS A 57 SHEET 4 AA1 4 TRP A 32 ALA A 33 -1 N TRP A 32 O LEU A 123 SHEET 1 AA2 5 THR A 7 ALA A 10 0 SHEET 2 AA2 5 GLN A 41 TRP A 60 -1 O TYR A 44 N THR A 9 SHEET 3 AA2 5 ILE A 95 ARG A 115 -1 O LYS A 106 N LEU A 47 SHEET 4 AA2 5 ALA A 65 SER A 73 -1 N GLN A 71 O ARG A 109 SHEET 5 AA2 5 THR A 83 THR A 88 -1 O VAL A 85 N ILE A 70 SHEET 1 AA3 4 ALA B 8 ALA B 10 0 SHEET 2 AA3 4 GLN B 41 TRP B 60 -1 O TYR B 44 N THR B 9 SHEET 3 AA3 4 SER B 122 TYR B 129 -1 O TYR B 129 N ASN B 54 SHEET 4 AA3 4 TRP B 32 ALA B 33 -1 N TRP B 32 O LEU B 123 SHEET 1 AA4 5 ALA B 8 ALA B 10 0 SHEET 2 AA4 5 GLN B 41 TRP B 60 -1 O TYR B 44 N THR B 9 SHEET 3 AA4 5 ILE B 95 ARG B 115 -1 O ASP B 96 N LEU B 58 SHEET 4 AA4 5 ALA B 65 SER B 73 -1 N GLN B 71 O ARG B 109 SHEET 5 AA4 5 THR B 83 THR B 88 -1 O VAL B 85 N ILE B 70 LINK C ARG A 109 N MSE A 110 1555 1555 1.29 LINK C MSE A 110 N HIS A 111 1555 1555 1.32 LINK C ARG B 109 N MSE B 110 1555 1555 1.32 LINK C MSE B 110 N HIS B 111 1555 1555 1.32 CISPEP 1 ASP A 39 PRO A 40 0 -5.64 CISPEP 2 ASP B 39 PRO B 40 0 -7.06 CRYST1 28.233 65.329 69.887 90.00 97.21 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.035420 0.000000 0.004483 0.00000 SCALE2 0.000000 0.015307 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014423 0.00000