data_4ZYD # _entry.id 4ZYD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4ZYD pdb_00004zyd 10.2210/pdb4zyd/pdb WWPDB D_1000210112 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-08-12 2 'Structure model' 1 1 2024-01-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4ZYD _pdbx_database_status.recvd_initial_deposition_date 2015-05-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Miggiano, R.' 1 'Rossi, F.' 2 'Rizzi, M.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 43 _citation.language ? _citation.page_first 8801 _citation.page_last 8816 _citation.title 'Structure-function relationships governing activity and stability of a DNA alkylation damage repair thermostable protein.' _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkv774 _citation.pdbx_database_id_PubMed 26227971 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Perugino, G.' 1 ? primary 'Miggiano, R.' 2 ? primary 'Serpe, M.' 3 ? primary 'Vettone, A.' 4 ? primary 'Valenti, A.' 5 ? primary 'Lahiri, S.' 6 ? primary 'Rossi, F.' 7 ? primary 'Rossi, M.' 8 ? primary 'Rizzi, M.' 9 ? primary 'Ciaramella, M.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Methylated-DNA--protein-cysteine methyltransferase' 17027.996 1 2.1.1.63 C119A ? ;Methionine at position 1 and glutamic acid at position 151 were not detected in electron density map. Therefore, they were excluded from the coordinate file. ; 2 polymer syn ;DNA (5'-D(*GP*CP*CP*AP*TP*GP*(6OG)P*CP*TP*AP*GP*TP*A)-3') ; 4005.637 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*GP*C)-3') ; 3951.586 1 ? ? ? ? 4 water nat water 18.015 6 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '6-O-methylguanine-DNA methyltransferase,MGMT,O-6-methylguanine-DNA-alkyltransferase' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MLVYGLYKSPLGYITVAKDDKGFIMLDFCDCVEGNSRDDSSFTEFFHKLDLYFEGKPINLREPINLKTYPFRLSVFKEVM KIPWGKVMTYKQIADSLGTSPRAVGMALSKNPILLIIPAHRVIAENGIGGYSRGVKLKRALLELEGVKIPE ; ;MLVYGLYKSPLGYITVAKDDKGFIMLDFCDCVEGNSRDDSSFTEFFHKLDLYFEGKPINLREPINLKTYPFRLSVFKEVM KIPWGKVMTYKQIADSLGTSPRAVGMALSKNPILLIIPAHRVIAENGIGGYSRGVKLKRALLELEGVKIPE ; A ? 2 polydeoxyribonucleotide no yes '(DG)(DC)(DC)(DA)(DT)(DG)(6OG)(DC)(DT)(DA)(DG)(DT)(DA)' GCCATGGCTAGTA B ? 3 polydeoxyribonucleotide no no '(DT)(DA)(DC)(DT)(DA)(DG)(DC)(DC)(DA)(DT)(DG)(DG)(DC)' TACTAGCCATGGC C ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LEU n 1 3 VAL n 1 4 TYR n 1 5 GLY n 1 6 LEU n 1 7 TYR n 1 8 LYS n 1 9 SER n 1 10 PRO n 1 11 LEU n 1 12 GLY n 1 13 TYR n 1 14 ILE n 1 15 THR n 1 16 VAL n 1 17 ALA n 1 18 LYS n 1 19 ASP n 1 20 ASP n 1 21 LYS n 1 22 GLY n 1 23 PHE n 1 24 ILE n 1 25 MET n 1 26 LEU n 1 27 ASP n 1 28 PHE n 1 29 CYS n 1 30 ASP n 1 31 CYS n 1 32 VAL n 1 33 GLU n 1 34 GLY n 1 35 ASN n 1 36 SER n 1 37 ARG n 1 38 ASP n 1 39 ASP n 1 40 SER n 1 41 SER n 1 42 PHE n 1 43 THR n 1 44 GLU n 1 45 PHE n 1 46 PHE n 1 47 HIS n 1 48 LYS n 1 49 LEU n 1 50 ASP n 1 51 LEU n 1 52 TYR n 1 53 PHE n 1 54 GLU n 1 55 GLY n 1 56 LYS n 1 57 PRO n 1 58 ILE n 1 59 ASN n 1 60 LEU n 1 61 ARG n 1 62 GLU n 1 63 PRO n 1 64 ILE n 1 65 ASN n 1 66 LEU n 1 67 LYS n 1 68 THR n 1 69 TYR n 1 70 PRO n 1 71 PHE n 1 72 ARG n 1 73 LEU n 1 74 SER n 1 75 VAL n 1 76 PHE n 1 77 LYS n 1 78 GLU n 1 79 VAL n 1 80 MET n 1 81 LYS n 1 82 ILE n 1 83 PRO n 1 84 TRP n 1 85 GLY n 1 86 LYS n 1 87 VAL n 1 88 MET n 1 89 THR n 1 90 TYR n 1 91 LYS n 1 92 GLN n 1 93 ILE n 1 94 ALA n 1 95 ASP n 1 96 SER n 1 97 LEU n 1 98 GLY n 1 99 THR n 1 100 SER n 1 101 PRO n 1 102 ARG n 1 103 ALA n 1 104 VAL n 1 105 GLY n 1 106 MET n 1 107 ALA n 1 108 LEU n 1 109 SER n 1 110 LYS n 1 111 ASN n 1 112 PRO n 1 113 ILE n 1 114 LEU n 1 115 LEU n 1 116 ILE n 1 117 ILE n 1 118 PRO n 1 119 ALA n 1 120 HIS n 1 121 ARG n 1 122 VAL n 1 123 ILE n 1 124 ALA n 1 125 GLU n 1 126 ASN n 1 127 GLY n 1 128 ILE n 1 129 GLY n 1 130 GLY n 1 131 TYR n 1 132 SER n 1 133 ARG n 1 134 GLY n 1 135 VAL n 1 136 LYS n 1 137 LEU n 1 138 LYS n 1 139 ARG n 1 140 ALA n 1 141 LEU n 1 142 LEU n 1 143 GLU n 1 144 LEU n 1 145 GLU n 1 146 GLY n 1 147 VAL n 1 148 LYS n 1 149 ILE n 1 150 PRO n 1 151 GLU n 2 1 DG n 2 2 DC n 2 3 DC n 2 4 DA n 2 5 DT n 2 6 DG n 2 7 6OG n 2 8 DC n 2 9 DT n 2 10 DA n 2 11 DG n 2 12 DT n 2 13 DA n 3 1 DT n 3 2 DA n 3 3 DC n 3 4 DT n 3 5 DA n 3 6 DG n 3 7 DC n 3 8 DC n 3 9 DA n 3 10 DT n 3 11 DG n 3 12 DG n 3 13 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 151 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ogt, SSO2487' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sulfolobus solfataricus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2287 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pQE31 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 13 'synthetic construct' ? 32630 ? 3 1 sample 1 13 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 6OG 'DNA linking' n ;6-O-METHYL GUANOSINE-5'-MONOPHOSPHATE ; ? 'C11 H16 N5 O7 P' 361.248 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 TYR 4 4 4 TYR TYR A . n A 1 5 GLY 5 5 5 GLY GLY A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 TYR 7 7 7 TYR TYR A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 TYR 13 13 13 TYR TYR A . n A 1 14 ILE 14 14 14 ILE ILE A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 ASP 19 19 19 ASP ASP A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 PHE 23 23 23 PHE PHE A . n A 1 24 ILE 24 24 24 ILE ILE A . n A 1 25 MET 25 25 25 MET MET A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 PHE 28 28 28 PHE PHE A . n A 1 29 CYS 29 29 29 CYS CYS A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 CYS 31 31 31 CYS CYS A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 ASN 35 35 35 ASN ASN A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 ARG 37 37 37 ARG ARG A . n A 1 38 ASP 38 38 38 ASP ASP A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 PHE 42 42 42 PHE PHE A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 PHE 45 45 45 PHE PHE A . n A 1 46 PHE 46 46 46 PHE PHE A . n A 1 47 HIS 47 47 47 HIS HIS A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 GLU 54 54 54 GLU GLU A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 PRO 57 57 57 PRO PRO A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 PRO 63 63 63 PRO PRO A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 THR 68 68 68 THR THR A . n A 1 69 TYR 69 69 69 TYR TYR A . n A 1 70 PRO 70 70 70 PRO PRO A . n A 1 71 PHE 71 71 71 PHE PHE A . n A 1 72 ARG 72 72 72 ARG ARG A . n A 1 73 LEU 73 73 73 LEU LEU A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 PHE 76 76 76 PHE PHE A . n A 1 77 LYS 77 77 77 LYS LYS A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 VAL 79 79 79 VAL VAL A . n A 1 80 MET 80 80 80 MET MET A . n A 1 81 LYS 81 81 81 LYS LYS A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 PRO 83 83 83 PRO PRO A . n A 1 84 TRP 84 84 84 TRP TRP A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 LYS 86 86 86 LYS LYS A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 MET 88 88 88 MET MET A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 TYR 90 90 90 TYR TYR A . n A 1 91 LYS 91 91 91 LYS LYS A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 ASP 95 95 95 ASP ASP A . n A 1 96 SER 96 96 96 SER SER A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 GLY 98 98 98 GLY GLY A . n A 1 99 THR 99 99 99 THR THR A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 PRO 101 101 101 PRO PRO A . n A 1 102 ARG 102 102 102 ARG ARG A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 VAL 104 104 104 VAL VAL A . n A 1 105 GLY 105 105 105 GLY GLY A . n A 1 106 MET 106 106 106 MET MET A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 SER 109 109 109 SER SER A . n A 1 110 LYS 110 110 110 LYS LYS A . n A 1 111 ASN 111 111 111 ASN ASN A . n A 1 112 PRO 112 112 112 PRO PRO A . n A 1 113 ILE 113 113 113 ILE ILE A . n A 1 114 LEU 114 114 114 LEU LEU A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 ILE 116 116 116 ILE ILE A . n A 1 117 ILE 117 117 117 ILE ILE A . n A 1 118 PRO 118 118 118 PRO PRO A . n A 1 119 ALA 119 119 119 ALA ALA A . n A 1 120 HIS 120 120 120 HIS HIS A . n A 1 121 ARG 121 121 121 ARG ARG A . n A 1 122 VAL 122 122 122 VAL VAL A . n A 1 123 ILE 123 123 123 ILE ILE A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 GLU 125 125 125 GLU GLU A . n A 1 126 ASN 126 126 126 ASN ASN A . n A 1 127 GLY 127 127 127 GLY GLY A . n A 1 128 ILE 128 128 128 ILE ILE A . n A 1 129 GLY 129 129 129 GLY GLY A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 TYR 131 131 131 TYR TYR A . n A 1 132 SER 132 132 132 SER SER A . n A 1 133 ARG 133 133 133 ARG ARG A . n A 1 134 GLY 134 134 134 GLY GLY A . n A 1 135 VAL 135 135 135 VAL VAL A . n A 1 136 LYS 136 136 136 LYS LYS A . n A 1 137 LEU 137 137 137 LEU LEU A . n A 1 138 LYS 138 138 138 LYS LYS A . n A 1 139 ARG 139 139 139 ARG ARG A . n A 1 140 ALA 140 140 140 ALA ALA A . n A 1 141 LEU 141 141 141 LEU LEU A . n A 1 142 LEU 142 142 142 LEU LEU A . n A 1 143 GLU 143 143 143 GLU GLU A . n A 1 144 LEU 144 144 144 LEU LEU A . n A 1 145 GLU 145 145 145 GLU GLU A . n A 1 146 GLY 146 146 146 GLY GLY A . n A 1 147 VAL 147 147 147 VAL VAL A . n A 1 148 LYS 148 148 148 LYS LYS A . n A 1 149 ILE 149 149 149 ILE ILE A . n A 1 150 PRO 150 150 150 PRO PRO A . n A 1 151 GLU 151 151 ? ? ? A . n B 2 1 DG 1 1 1 DG DG B . n B 2 2 DC 2 2 2 DC DC B . n B 2 3 DC 3 3 3 DC DC B . n B 2 4 DA 4 4 4 DA DA B . n B 2 5 DT 5 5 5 DT DT B . n B 2 6 DG 6 6 6 DG DG B . n B 2 7 6OG 7 7 7 6OG 6OG B . n B 2 8 DC 8 8 8 DC DC B . n B 2 9 DT 9 9 9 DT DT B . n B 2 10 DA 10 10 10 DA DA B . n B 2 11 DG 11 11 11 DG DG B . n B 2 12 DT 12 12 12 DT DT B . n B 2 13 DA 13 13 13 DA DA B . n C 3 1 DT 1 14 14 DT DT C . n C 3 2 DA 2 15 15 DA DA C . n C 3 3 DC 3 16 16 DC DC C . n C 3 4 DT 4 17 17 DT DT C . n C 3 5 DA 5 18 18 DA DA C . n C 3 6 DG 6 19 19 DG DG C . n C 3 7 DC 7 20 20 DC DC C . n C 3 8 DC 8 21 21 DC DC C . n C 3 9 DA 9 22 22 DA DA C . n C 3 10 DT 10 23 23 DT DT C . n C 3 11 DG 11 24 24 DG DG C . n C 3 12 DG 12 25 25 DG DG C . n C 3 13 DC 13 26 26 DC DC C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HOH 1 201 3 HOH HOH A . D 4 HOH 2 202 4 HOH HOH A . D 4 HOH 3 203 2 HOH HOH A . D 4 HOH 4 204 6 HOH HOH A . E 4 HOH 1 101 1 HOH HOH B . E 4 HOH 2 102 5 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9_1690 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.entry_id 4ZYD _cell.length_a 41.764 _cell.length_b 65.879 _cell.length_c 97.528 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZYD _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4ZYD _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.71 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 54.67 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 277.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '20% PEG 3350, Na/K tartrate 0.2 M' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'PSI PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-12-13 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9724 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9724 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_synchrotron_site ESRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4ZYD _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.67 _reflns.d_resolution_low 41.76 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all . _reflns.number_obs 7993 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.2 _reflns.pdbx_Rmerge_I_obs 0.081 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 10.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.67 _reflns_shell.d_res_low ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.7 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 90.9 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.77 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 5.2 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4ZYD _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 7916 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 39.195 _refine.ls_d_res_high 2.682 _refine.ls_percent_reflns_obs 99.11 _refine.ls_R_factor_obs 0.2164 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2134 _refine.ls_R_factor_R_free 0.2712 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.67 _refine.ls_number_reflns_R_free 370 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model 1WRJ _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.45 _refine.pdbx_overall_phase_error 32.68 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1179 _refine_hist.pdbx_number_atoms_nucleic_acid 528 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 6 _refine_hist.number_atoms_total 1713 _refine_hist.d_res_high 2.682 _refine_hist.d_res_low 39.195 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.010 ? ? 1798 'X-RAY DIFFRACTION' ? f_angle_d 1.324 ? ? 2534 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 24.403 ? ? 708 'X-RAY DIFFRACTION' ? f_chiral_restr 0.054 ? ? 281 'X-RAY DIFFRACTION' ? f_plane_restr 0.006 ? ? 230 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.6822 3.0702 2421 0.2947 98.00 0.4011 . . 123 . . . . 'X-RAY DIFFRACTION' . 3.0702 3.8676 2506 0.2432 99.00 0.2926 . . 112 . . . . 'X-RAY DIFFRACTION' . 3.8676 39.1989 2619 0.1860 100.00 0.2411 . . 135 . . . . # _struct.entry_id 4ZYD _struct.title 'Crystal structure of Sulfolobus solfataricus O6-methylguanine methyltransferase in complex with modified DNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4ZYD _struct_keywords.text 'Transferase, Extremophiles, DNA repair, Alkylated DNA-protein alkyltransferase, protein-DNA complex, cell cycle' _struct_keywords.pdbx_keywords TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP OGT_SULSO Q97VW7 ? 1 ;MLVYGLYKSPLGYITVAKDDKGFIMLDFCDCVEGNSRDDSSFTEFFHKLDLYFEGKPINLREPINLKTYPFRLSVFKEVM KIPWGKVMTYKQIADSLGTSPRAVGMALSKNPILLIIPCHRVIAENGIGGYSRGVKLKRALLELEGVKIPE ; 1 2 PDB 4ZYD 4ZYD ? 2 ? 1 3 PDB 4ZYD 4ZYD ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4ZYD A 1 ? 151 ? Q97VW7 1 ? 151 ? 1 151 2 2 4ZYD B 1 ? 13 ? 4ZYD 1 ? 13 ? 1 13 3 3 4ZYD C 1 ? 13 ? 4ZYD 14 ? 26 ? 14 26 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4ZYD _struct_ref_seq_dif.mon_id ALA _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 119 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q97VW7 _struct_ref_seq_dif.db_mon_id CYS _struct_ref_seq_dif.pdbx_seq_db_seq_num 119 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 119 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA trimeric 3 2 author_and_software_defined_assembly PISA trimeric 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3310 ? 1 MORE -10.0 ? 1 'SSA (A^2)' 11280 ? 2 'ABSA (A^2)' 3310 ? 2 MORE -10.0 ? 2 'SSA (A^2)' 11280 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D 1 2 B,C,E 2 1 B,C,E 2 3 A,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_556 x+1/2,-y+1/2,-z+1 1.0000000000 0.0000000000 0.0000000000 20.8820000000 0.0000000000 -1.0000000000 0.0000000000 32.9395000000 0.0000000000 0.0000000000 -1.0000000000 97.5280000000 3 'crystal symmetry operation' 4_456 x-1/2,-y+1/2,-z+1 1.0000000000 0.0000000000 0.0000000000 -20.8820000000 0.0000000000 -1.0000000000 0.0000000000 32.9395000000 0.0000000000 0.0000000000 -1.0000000000 97.5280000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 38 ? SER A 41 ? ASP A 38 SER A 41 5 ? 4 HELX_P HELX_P2 AA2 PHE A 42 ? PHE A 53 ? PHE A 42 PHE A 53 1 ? 12 HELX_P HELX_P3 AA3 TYR A 69 ? MET A 80 ? TYR A 69 MET A 80 1 ? 12 HELX_P HELX_P4 AA4 TYR A 90 ? GLY A 98 ? TYR A 90 GLY A 98 1 ? 9 HELX_P HELX_P5 AA5 SER A 100 ? LYS A 110 ? SER A 100 LYS A 110 1 ? 11 HELX_P HELX_P6 AA6 PRO A 118 ? HIS A 120 ? PRO A 118 HIS A 120 5 ? 3 HELX_P HELX_P7 AA7 GLY A 134 ? GLU A 145 ? GLY A 134 GLU A 145 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 29 SG ? ? ? 1_555 A CYS 31 SG ? ? A CYS 29 A CYS 31 1_555 ? ? ? ? ? ? ? 2.034 ? ? covale1 covale both ? B DG 6 "O3'" ? ? ? 1_555 B 6OG 7 P ? ? B DG 6 B 6OG 7 1_555 ? ? ? ? ? ? ? 1.528 ? ? covale2 covale one ? B 6OG 7 "O3'" ? ? ? 1_555 B DC 8 P ? ? B 6OG 7 B DC 8 1_555 ? ? ? ? ? ? ? 1.542 ? ? hydrog1 hydrog ? ? B DG 1 N1 ? ? ? 1_555 C DC 13 N3 ? ? B DG 1 C DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DG 1 N2 ? ? ? 1_555 C DC 13 O2 ? ? B DG 1 C DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 1 O6 ? ? ? 1_555 C DC 13 N4 ? ? B DG 1 C DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 2 N3 ? ? ? 1_555 C DG 12 N1 ? ? B DC 2 C DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DC 2 N4 ? ? ? 1_555 C DG 12 O6 ? ? B DC 2 C DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DC 2 O2 ? ? ? 1_555 C DG 12 N2 ? ? B DC 2 C DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DC 3 N3 ? ? ? 1_555 C DG 11 N1 ? ? B DC 3 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DC 3 N4 ? ? ? 1_555 C DG 11 O6 ? ? B DC 3 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DC 3 O2 ? ? ? 1_555 C DG 11 N2 ? ? B DC 3 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DA 4 N1 ? ? ? 1_555 C DT 10 N3 ? ? B DA 4 C DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DA 4 N6 ? ? ? 1_555 C DT 10 O4 ? ? B DA 4 C DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DT 5 N3 ? ? ? 1_555 C DA 9 N1 ? ? B DT 5 C DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DT 5 O4 ? ? ? 1_555 C DA 9 N6 ? ? B DT 5 C DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DG 6 N1 ? ? ? 1_555 C DC 8 N3 ? ? B DG 6 C DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DG 6 N2 ? ? ? 1_555 C DC 8 O2 ? ? B DG 6 C DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DG 6 O6 ? ? ? 1_555 C DC 8 N4 ? ? B DG 6 C DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DC 8 N3 ? ? ? 1_555 C DG 6 N1 ? ? B DC 8 C DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DC 8 N4 ? ? ? 1_555 C DG 6 O6 ? ? B DC 8 C DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DC 8 O2 ? ? ? 1_555 C DG 6 N2 ? ? B DC 8 C DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 5 N1 ? ? B DT 9 C DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 5 N6 ? ? B DT 9 C DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DA 10 N1 ? ? ? 1_555 C DT 4 N3 ? ? B DA 10 C DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DA 10 N6 ? ? ? 1_555 C DT 4 O4 ? ? B DA 10 C DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 3 N3 ? ? B DG 11 C DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 3 O2 ? ? B DG 11 C DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 3 N4 ? ? B DG 11 C DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DT 12 N3 ? ? ? 1_555 C DA 2 N1 ? ? B DT 12 C DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DT 12 O4 ? ? ? 1_555 C DA 2 N6 ? ? B DT 12 C DA 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DA 13 N1 ? ? ? 1_555 C DT 1 N3 ? ? B DA 13 C DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DA 13 N6 ? ? ? 1_555 C DT 1 O4 ? ? B DA 13 C DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TYR A 4 ? SER A 9 ? TYR A 4 SER A 9 AA1 2 GLY A 12 ? ALA A 17 ? GLY A 12 ALA A 17 AA1 3 MET A 25 ? ASP A 27 ? MET A 25 ASP A 27 AA2 1 MET A 88 ? THR A 89 ? MET A 88 THR A 89 AA2 2 VAL A 122 ? ILE A 123 ? VAL A 122 ILE A 123 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N TYR A 7 ? N TYR A 7 O ILE A 14 ? O ILE A 14 AA1 2 3 N THR A 15 ? N THR A 15 O ASP A 27 ? O ASP A 27 AA2 1 2 N MET A 88 ? N MET A 88 O ILE A 123 ? O ILE A 123 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A VAL 32 ? ? OD1 A ASN 35 ? ? 0.87 2 1 O A VAL 32 ? ? CG A ASN 35 ? ? 1.86 3 1 C A VAL 32 ? ? OD1 A ASN 35 ? ? 2.00 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" B DG 6 ? ? "C3'" B DG 6 ? ? 1.380 1.419 -0.039 0.006 N 2 1 "O3'" B DG 6 ? ? P B 6OG 7 ? ? 1.528 1.607 -0.079 0.012 Y 3 1 "O3'" C DG 19 ? ? P C DC 20 ? ? 1.512 1.607 -0.095 0.012 Y 4 1 "O3'" C DC 21 ? ? P C DA 22 ? ? 1.513 1.607 -0.094 0.012 Y # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 C _pdbx_validate_rmsd_angle.auth_comp_id_1 DC _pdbx_validate_rmsd_angle.auth_seq_id_1 16 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 C _pdbx_validate_rmsd_angle.auth_comp_id_2 DC _pdbx_validate_rmsd_angle.auth_seq_id_2 16 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N1 _pdbx_validate_rmsd_angle.auth_asym_id_3 C _pdbx_validate_rmsd_angle.auth_comp_id_3 DC _pdbx_validate_rmsd_angle.auth_seq_id_3 16 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 110.36 _pdbx_validate_rmsd_angle.angle_target_value 108.30 _pdbx_validate_rmsd_angle.angle_deviation 2.06 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 18 ? ? -105.19 -167.09 2 1 ASP A 19 ? ? 178.76 168.84 3 1 ASP A 38 ? ? -165.85 85.69 4 1 THR A 68 ? ? -64.72 -177.86 5 1 LEU A 115 ? ? 64.35 -59.95 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A GLU 151 ? A GLU 151 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 6OG P P N N 1 6OG OP1 O N N 2 6OG OP2 O N N 3 6OG "O5'" O N N 4 6OG N9 N Y N 5 6OG C4 C Y N 6 6OG N3 N Y N 7 6OG C2 C Y N 8 6OG N2 N N N 9 6OG N1 N Y N 10 6OG C6 C Y N 11 6OG O6 O N N 12 6OG C5 C Y N 13 6OG N7 N Y N 14 6OG C8 C Y N 15 6OG "C2'" C N N 16 6OG "C5'" C N N 17 6OG "C4'" C N R 18 6OG "O4'" O N N 19 6OG "C1'" C N R 20 6OG "C3'" C N S 21 6OG "O3'" O N N 22 6OG C C N N 23 6OG HOP2 H N N 24 6OG HN21 H N N 25 6OG HN22 H N N 26 6OG H8 H N N 27 6OG "H2'" H N N 28 6OG "H2''" H N N 29 6OG "H5'" H N N 30 6OG "H5''" H N N 31 6OG "H4'" H N N 32 6OG "H1'" H N N 33 6OG "H3'" H N N 34 6OG "HO3'" H N N 35 6OG H1 H N N 36 6OG H2 H N N 37 6OG H3 H N N 38 6OG OP3 O N N 39 6OG HOP3 H N N 40 ALA N N N N 41 ALA CA C N S 42 ALA C C N N 43 ALA O O N N 44 ALA CB C N N 45 ALA OXT O N N 46 ALA H H N N 47 ALA H2 H N N 48 ALA HA H N N 49 ALA HB1 H N N 50 ALA HB2 H N N 51 ALA HB3 H N N 52 ALA HXT H N N 53 ARG N N N N 54 ARG CA C N S 55 ARG C C N N 56 ARG O O N N 57 ARG CB C N N 58 ARG CG C N N 59 ARG CD C N N 60 ARG NE N N N 61 ARG CZ C N N 62 ARG NH1 N N N 63 ARG NH2 N N N 64 ARG OXT O N N 65 ARG H H N N 66 ARG H2 H N N 67 ARG HA H N N 68 ARG HB2 H N N 69 ARG HB3 H N N 70 ARG HG2 H N N 71 ARG HG3 H N N 72 ARG HD2 H N N 73 ARG HD3 H N N 74 ARG HE H N N 75 ARG HH11 H N N 76 ARG HH12 H N N 77 ARG HH21 H N N 78 ARG HH22 H N N 79 ARG HXT H N N 80 ASN N N N N 81 ASN CA C N S 82 ASN C C N N 83 ASN O O N N 84 ASN CB C N N 85 ASN CG C N N 86 ASN OD1 O N N 87 ASN ND2 N N N 88 ASN OXT O N N 89 ASN H H N N 90 ASN H2 H N N 91 ASN HA H N N 92 ASN HB2 H N N 93 ASN HB3 H N N 94 ASN HD21 H N N 95 ASN HD22 H N N 96 ASN HXT H N N 97 ASP N N N N 98 ASP CA C N S 99 ASP C C N N 100 ASP O O N N 101 ASP CB C N N 102 ASP CG C N N 103 ASP OD1 O N N 104 ASP OD2 O N N 105 ASP OXT O N N 106 ASP H H N N 107 ASP H2 H N N 108 ASP HA H N N 109 ASP HB2 H N N 110 ASP HB3 H N N 111 ASP HD2 H N N 112 ASP HXT H N N 113 CYS N N N N 114 CYS CA C N R 115 CYS C C N N 116 CYS O O N N 117 CYS CB C N N 118 CYS SG S N N 119 CYS OXT O N N 120 CYS H H N N 121 CYS H2 H N N 122 CYS HA H N N 123 CYS HB2 H N N 124 CYS HB3 H N N 125 CYS HG H N N 126 CYS HXT H N N 127 DA OP3 O N N 128 DA P P N N 129 DA OP1 O N N 130 DA OP2 O N N 131 DA "O5'" O N N 132 DA "C5'" C N N 133 DA "C4'" C N R 134 DA "O4'" O N N 135 DA "C3'" C N S 136 DA "O3'" O N N 137 DA "C2'" C N N 138 DA "C1'" C N R 139 DA N9 N Y N 140 DA C8 C Y N 141 DA N7 N Y N 142 DA C5 C Y N 143 DA C6 C Y N 144 DA N6 N N N 145 DA N1 N Y N 146 DA C2 C Y N 147 DA N3 N Y N 148 DA C4 C Y N 149 DA HOP3 H N N 150 DA HOP2 H N N 151 DA "H5'" H N N 152 DA "H5''" H N N 153 DA "H4'" H N N 154 DA "H3'" H N N 155 DA "HO3'" H N N 156 DA "H2'" H N N 157 DA "H2''" H N N 158 DA "H1'" H N N 159 DA H8 H N N 160 DA H61 H N N 161 DA H62 H N N 162 DA H2 H N N 163 DC OP3 O N N 164 DC P P N N 165 DC OP1 O N N 166 DC OP2 O N N 167 DC "O5'" O N N 168 DC "C5'" C N N 169 DC "C4'" C N R 170 DC "O4'" O N N 171 DC "C3'" C N S 172 DC "O3'" O N N 173 DC "C2'" C N N 174 DC "C1'" C N R 175 DC N1 N N N 176 DC C2 C N N 177 DC O2 O N N 178 DC N3 N N N 179 DC C4 C N N 180 DC N4 N N N 181 DC C5 C N N 182 DC C6 C N N 183 DC HOP3 H N N 184 DC HOP2 H N N 185 DC "H5'" H N N 186 DC "H5''" H N N 187 DC "H4'" H N N 188 DC "H3'" H N N 189 DC "HO3'" H N N 190 DC "H2'" H N N 191 DC "H2''" H N N 192 DC "H1'" H N N 193 DC H41 H N N 194 DC H42 H N N 195 DC H5 H N N 196 DC H6 H N N 197 DG OP3 O N N 198 DG P P N N 199 DG OP1 O N N 200 DG OP2 O N N 201 DG "O5'" O N N 202 DG "C5'" C N N 203 DG "C4'" C N R 204 DG "O4'" O N N 205 DG "C3'" C N S 206 DG "O3'" O N N 207 DG "C2'" C N N 208 DG "C1'" C N R 209 DG N9 N Y N 210 DG C8 C Y N 211 DG N7 N Y N 212 DG C5 C Y N 213 DG C6 C N N 214 DG O6 O N N 215 DG N1 N N N 216 DG C2 C N N 217 DG N2 N N N 218 DG N3 N N N 219 DG C4 C Y N 220 DG HOP3 H N N 221 DG HOP2 H N N 222 DG "H5'" H N N 223 DG "H5''" H N N 224 DG "H4'" H N N 225 DG "H3'" H N N 226 DG "HO3'" H N N 227 DG "H2'" H N N 228 DG "H2''" H N N 229 DG "H1'" H N N 230 DG H8 H N N 231 DG H1 H N N 232 DG H21 H N N 233 DG H22 H N N 234 DT OP3 O N N 235 DT P P N N 236 DT OP1 O N N 237 DT OP2 O N N 238 DT "O5'" O N N 239 DT "C5'" C N N 240 DT "C4'" C N R 241 DT "O4'" O N N 242 DT "C3'" C N S 243 DT "O3'" O N N 244 DT "C2'" C N N 245 DT "C1'" C N R 246 DT N1 N N N 247 DT C2 C N N 248 DT O2 O N N 249 DT N3 N N N 250 DT C4 C N N 251 DT O4 O N N 252 DT C5 C N N 253 DT C7 C N N 254 DT C6 C N N 255 DT HOP3 H N N 256 DT HOP2 H N N 257 DT "H5'" H N N 258 DT "H5''" H N N 259 DT "H4'" H N N 260 DT "H3'" H N N 261 DT "HO3'" H N N 262 DT "H2'" H N N 263 DT "H2''" H N N 264 DT "H1'" H N N 265 DT H3 H N N 266 DT H71 H N N 267 DT H72 H N N 268 DT H73 H N N 269 DT H6 H N N 270 GLN N N N N 271 GLN CA C N S 272 GLN C C N N 273 GLN O O N N 274 GLN CB C N N 275 GLN CG C N N 276 GLN CD C N N 277 GLN OE1 O N N 278 GLN NE2 N N N 279 GLN OXT O N N 280 GLN H H N N 281 GLN H2 H N N 282 GLN HA H N N 283 GLN HB2 H N N 284 GLN HB3 H N N 285 GLN HG2 H N N 286 GLN HG3 H N N 287 GLN HE21 H N N 288 GLN HE22 H N N 289 GLN HXT H N N 290 GLU N N N N 291 GLU CA C N S 292 GLU C C N N 293 GLU O O N N 294 GLU CB C N N 295 GLU CG C N N 296 GLU CD C N N 297 GLU OE1 O N N 298 GLU OE2 O N N 299 GLU OXT O N N 300 GLU H H N N 301 GLU H2 H N N 302 GLU HA H N N 303 GLU HB2 H N N 304 GLU HB3 H N N 305 GLU HG2 H N N 306 GLU HG3 H N N 307 GLU HE2 H N N 308 GLU HXT H N N 309 GLY N N N N 310 GLY CA C N N 311 GLY C C N N 312 GLY O O N N 313 GLY OXT O N N 314 GLY H H N N 315 GLY H2 H N N 316 GLY HA2 H N N 317 GLY HA3 H N N 318 GLY HXT H N N 319 HIS N N N N 320 HIS CA C N S 321 HIS C C N N 322 HIS O O N N 323 HIS CB C N N 324 HIS CG C Y N 325 HIS ND1 N Y N 326 HIS CD2 C Y N 327 HIS CE1 C Y N 328 HIS NE2 N Y N 329 HIS OXT O N N 330 HIS H H N N 331 HIS H2 H N N 332 HIS HA H N N 333 HIS HB2 H N N 334 HIS HB3 H N N 335 HIS HD1 H N N 336 HIS HD2 H N N 337 HIS HE1 H N N 338 HIS HE2 H N N 339 HIS HXT H N N 340 HOH O O N N 341 HOH H1 H N N 342 HOH H2 H N N 343 ILE N N N N 344 ILE CA C N S 345 ILE C C N N 346 ILE O O N N 347 ILE CB C N S 348 ILE CG1 C N N 349 ILE CG2 C N N 350 ILE CD1 C N N 351 ILE OXT O N N 352 ILE H H N N 353 ILE H2 H N N 354 ILE HA H N N 355 ILE HB H N N 356 ILE HG12 H N N 357 ILE HG13 H N N 358 ILE HG21 H N N 359 ILE HG22 H N N 360 ILE HG23 H N N 361 ILE HD11 H N N 362 ILE HD12 H N N 363 ILE HD13 H N N 364 ILE HXT H N N 365 LEU N N N N 366 LEU CA C N S 367 LEU C C N N 368 LEU O O N N 369 LEU CB C N N 370 LEU CG C N N 371 LEU CD1 C N N 372 LEU CD2 C N N 373 LEU OXT O N N 374 LEU H H N N 375 LEU H2 H N N 376 LEU HA H N N 377 LEU HB2 H N N 378 LEU HB3 H N N 379 LEU HG H N N 380 LEU HD11 H N N 381 LEU HD12 H N N 382 LEU HD13 H N N 383 LEU HD21 H N N 384 LEU HD22 H N N 385 LEU HD23 H N N 386 LEU HXT H N N 387 LYS N N N N 388 LYS CA C N S 389 LYS C C N N 390 LYS O O N N 391 LYS CB C N N 392 LYS CG C N N 393 LYS CD C N N 394 LYS CE C N N 395 LYS NZ N N N 396 LYS OXT O N N 397 LYS H H N N 398 LYS H2 H N N 399 LYS HA H N N 400 LYS HB2 H N N 401 LYS HB3 H N N 402 LYS HG2 H N N 403 LYS HG3 H N N 404 LYS HD2 H N N 405 LYS HD3 H N N 406 LYS HE2 H N N 407 LYS HE3 H N N 408 LYS HZ1 H N N 409 LYS HZ2 H N N 410 LYS HZ3 H N N 411 LYS HXT H N N 412 MET N N N N 413 MET CA C N S 414 MET C C N N 415 MET O O N N 416 MET CB C N N 417 MET CG C N N 418 MET SD S N N 419 MET CE C N N 420 MET OXT O N N 421 MET H H N N 422 MET H2 H N N 423 MET HA H N N 424 MET HB2 H N N 425 MET HB3 H N N 426 MET HG2 H N N 427 MET HG3 H N N 428 MET HE1 H N N 429 MET HE2 H N N 430 MET HE3 H N N 431 MET HXT H N N 432 PHE N N N N 433 PHE CA C N S 434 PHE C C N N 435 PHE O O N N 436 PHE CB C N N 437 PHE CG C Y N 438 PHE CD1 C Y N 439 PHE CD2 C Y N 440 PHE CE1 C Y N 441 PHE CE2 C Y N 442 PHE CZ C Y N 443 PHE OXT O N N 444 PHE H H N N 445 PHE H2 H N N 446 PHE HA H N N 447 PHE HB2 H N N 448 PHE HB3 H N N 449 PHE HD1 H N N 450 PHE HD2 H N N 451 PHE HE1 H N N 452 PHE HE2 H N N 453 PHE HZ H N N 454 PHE HXT H N N 455 PRO N N N N 456 PRO CA C N S 457 PRO C C N N 458 PRO O O N N 459 PRO CB C N N 460 PRO CG C N N 461 PRO CD C N N 462 PRO OXT O N N 463 PRO H H N N 464 PRO HA H N N 465 PRO HB2 H N N 466 PRO HB3 H N N 467 PRO HG2 H N N 468 PRO HG3 H N N 469 PRO HD2 H N N 470 PRO HD3 H N N 471 PRO HXT H N N 472 SER N N N N 473 SER CA C N S 474 SER C C N N 475 SER O O N N 476 SER CB C N N 477 SER OG O N N 478 SER OXT O N N 479 SER H H N N 480 SER H2 H N N 481 SER HA H N N 482 SER HB2 H N N 483 SER HB3 H N N 484 SER HG H N N 485 SER HXT H N N 486 THR N N N N 487 THR CA C N S 488 THR C C N N 489 THR O O N N 490 THR CB C N R 491 THR OG1 O N N 492 THR CG2 C N N 493 THR OXT O N N 494 THR H H N N 495 THR H2 H N N 496 THR HA H N N 497 THR HB H N N 498 THR HG1 H N N 499 THR HG21 H N N 500 THR HG22 H N N 501 THR HG23 H N N 502 THR HXT H N N 503 TRP N N N N 504 TRP CA C N S 505 TRP C C N N 506 TRP O O N N 507 TRP CB C N N 508 TRP CG C Y N 509 TRP CD1 C Y N 510 TRP CD2 C Y N 511 TRP NE1 N Y N 512 TRP CE2 C Y N 513 TRP CE3 C Y N 514 TRP CZ2 C Y N 515 TRP CZ3 C Y N 516 TRP CH2 C Y N 517 TRP OXT O N N 518 TRP H H N N 519 TRP H2 H N N 520 TRP HA H N N 521 TRP HB2 H N N 522 TRP HB3 H N N 523 TRP HD1 H N N 524 TRP HE1 H N N 525 TRP HE3 H N N 526 TRP HZ2 H N N 527 TRP HZ3 H N N 528 TRP HH2 H N N 529 TRP HXT H N N 530 TYR N N N N 531 TYR CA C N S 532 TYR C C N N 533 TYR O O N N 534 TYR CB C N N 535 TYR CG C Y N 536 TYR CD1 C Y N 537 TYR CD2 C Y N 538 TYR CE1 C Y N 539 TYR CE2 C Y N 540 TYR CZ C Y N 541 TYR OH O N N 542 TYR OXT O N N 543 TYR H H N N 544 TYR H2 H N N 545 TYR HA H N N 546 TYR HB2 H N N 547 TYR HB3 H N N 548 TYR HD1 H N N 549 TYR HD2 H N N 550 TYR HE1 H N N 551 TYR HE2 H N N 552 TYR HH H N N 553 TYR HXT H N N 554 VAL N N N N 555 VAL CA C N S 556 VAL C C N N 557 VAL O O N N 558 VAL CB C N N 559 VAL CG1 C N N 560 VAL CG2 C N N 561 VAL OXT O N N 562 VAL H H N N 563 VAL H2 H N N 564 VAL HA H N N 565 VAL HB H N N 566 VAL HG11 H N N 567 VAL HG12 H N N 568 VAL HG13 H N N 569 VAL HG21 H N N 570 VAL HG22 H N N 571 VAL HG23 H N N 572 VAL HXT H N N 573 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6OG P OP1 doub N N 1 6OG P OP2 sing N N 2 6OG P "O5'" sing N N 3 6OG OP2 HOP2 sing N N 4 6OG "O5'" "C5'" sing N N 5 6OG N9 C4 sing Y N 6 6OG N9 C8 sing Y N 7 6OG N9 "C1'" sing N N 8 6OG C4 N3 sing Y N 9 6OG C4 C5 doub Y N 10 6OG N3 C2 doub Y N 11 6OG C2 N2 sing N N 12 6OG C2 N1 sing Y N 13 6OG N2 HN21 sing N N 14 6OG N2 HN22 sing N N 15 6OG N1 C6 doub Y N 16 6OG C6 O6 sing N N 17 6OG C6 C5 sing Y N 18 6OG O6 C sing N N 19 6OG C5 N7 sing Y N 20 6OG N7 C8 doub Y N 21 6OG C8 H8 sing N N 22 6OG "C2'" "C1'" sing N N 23 6OG "C2'" "C3'" sing N N 24 6OG "C2'" "H2'" sing N N 25 6OG "C2'" "H2''" sing N N 26 6OG "C5'" "C4'" sing N N 27 6OG "C5'" "H5'" sing N N 28 6OG "C5'" "H5''" sing N N 29 6OG "C4'" "O4'" sing N N 30 6OG "C4'" "C3'" sing N N 31 6OG "C4'" "H4'" sing N N 32 6OG "O4'" "C1'" sing N N 33 6OG "C1'" "H1'" sing N N 34 6OG "C3'" "O3'" sing N N 35 6OG "C3'" "H3'" sing N N 36 6OG "O3'" "HO3'" sing N N 37 6OG C H1 sing N N 38 6OG C H2 sing N N 39 6OG C H3 sing N N 40 6OG P OP3 sing N N 41 6OG OP3 HOP3 sing N N 42 ALA N CA sing N N 43 ALA N H sing N N 44 ALA N H2 sing N N 45 ALA CA C sing N N 46 ALA CA CB sing N N 47 ALA CA HA sing N N 48 ALA C O doub N N 49 ALA C OXT sing N N 50 ALA CB HB1 sing N N 51 ALA CB HB2 sing N N 52 ALA CB HB3 sing N N 53 ALA OXT HXT sing N N 54 ARG N CA sing N N 55 ARG N H sing N N 56 ARG N H2 sing N N 57 ARG CA C sing N N 58 ARG CA CB sing N N 59 ARG CA HA sing N N 60 ARG C O doub N N 61 ARG C OXT sing N N 62 ARG CB CG sing N N 63 ARG CB HB2 sing N N 64 ARG CB HB3 sing N N 65 ARG CG CD sing N N 66 ARG CG HG2 sing N N 67 ARG CG HG3 sing N N 68 ARG CD NE sing N N 69 ARG CD HD2 sing N N 70 ARG CD HD3 sing N N 71 ARG NE CZ sing N N 72 ARG NE HE sing N N 73 ARG CZ NH1 sing N N 74 ARG CZ NH2 doub N N 75 ARG NH1 HH11 sing N N 76 ARG NH1 HH12 sing N N 77 ARG NH2 HH21 sing N N 78 ARG NH2 HH22 sing N N 79 ARG OXT HXT sing N N 80 ASN N CA sing N N 81 ASN N H sing N N 82 ASN N H2 sing N N 83 ASN CA C sing N N 84 ASN CA CB sing N N 85 ASN CA HA sing N N 86 ASN C O doub N N 87 ASN C OXT sing N N 88 ASN CB CG sing N N 89 ASN CB HB2 sing N N 90 ASN CB HB3 sing N N 91 ASN CG OD1 doub N N 92 ASN CG ND2 sing N N 93 ASN ND2 HD21 sing N N 94 ASN ND2 HD22 sing N N 95 ASN OXT HXT sing N N 96 ASP N CA sing N N 97 ASP N H sing N N 98 ASP N H2 sing N N 99 ASP CA C sing N N 100 ASP CA CB sing N N 101 ASP CA HA sing N N 102 ASP C O doub N N 103 ASP C OXT sing N N 104 ASP CB CG sing N N 105 ASP CB HB2 sing N N 106 ASP CB HB3 sing N N 107 ASP CG OD1 doub N N 108 ASP CG OD2 sing N N 109 ASP OD2 HD2 sing N N 110 ASP OXT HXT sing N N 111 CYS N CA sing N N 112 CYS N H sing N N 113 CYS N H2 sing N N 114 CYS CA C sing N N 115 CYS CA CB sing N N 116 CYS CA HA sing N N 117 CYS C O doub N N 118 CYS C OXT sing N N 119 CYS CB SG sing N N 120 CYS CB HB2 sing N N 121 CYS CB HB3 sing N N 122 CYS SG HG sing N N 123 CYS OXT HXT sing N N 124 DA OP3 P sing N N 125 DA OP3 HOP3 sing N N 126 DA P OP1 doub N N 127 DA P OP2 sing N N 128 DA P "O5'" sing N N 129 DA OP2 HOP2 sing N N 130 DA "O5'" "C5'" sing N N 131 DA "C5'" "C4'" sing N N 132 DA "C5'" "H5'" sing N N 133 DA "C5'" "H5''" sing N N 134 DA "C4'" "O4'" sing N N 135 DA "C4'" "C3'" sing N N 136 DA "C4'" "H4'" sing N N 137 DA "O4'" "C1'" sing N N 138 DA "C3'" "O3'" sing N N 139 DA "C3'" "C2'" sing N N 140 DA "C3'" "H3'" sing N N 141 DA "O3'" "HO3'" sing N N 142 DA "C2'" "C1'" sing N N 143 DA "C2'" "H2'" sing N N 144 DA "C2'" "H2''" sing N N 145 DA "C1'" N9 sing N N 146 DA "C1'" "H1'" sing N N 147 DA N9 C8 sing Y N 148 DA N9 C4 sing Y N 149 DA C8 N7 doub Y N 150 DA C8 H8 sing N N 151 DA N7 C5 sing Y N 152 DA C5 C6 sing Y N 153 DA C5 C4 doub Y N 154 DA C6 N6 sing N N 155 DA C6 N1 doub Y N 156 DA N6 H61 sing N N 157 DA N6 H62 sing N N 158 DA N1 C2 sing Y N 159 DA C2 N3 doub Y N 160 DA C2 H2 sing N N 161 DA N3 C4 sing Y N 162 DC OP3 P sing N N 163 DC OP3 HOP3 sing N N 164 DC P OP1 doub N N 165 DC P OP2 sing N N 166 DC P "O5'" sing N N 167 DC OP2 HOP2 sing N N 168 DC "O5'" "C5'" sing N N 169 DC "C5'" "C4'" sing N N 170 DC "C5'" "H5'" sing N N 171 DC "C5'" "H5''" sing N N 172 DC "C4'" "O4'" sing N N 173 DC "C4'" "C3'" sing N N 174 DC "C4'" "H4'" sing N N 175 DC "O4'" "C1'" sing N N 176 DC "C3'" "O3'" sing N N 177 DC "C3'" "C2'" sing N N 178 DC "C3'" "H3'" sing N N 179 DC "O3'" "HO3'" sing N N 180 DC "C2'" "C1'" sing N N 181 DC "C2'" "H2'" sing N N 182 DC "C2'" "H2''" sing N N 183 DC "C1'" N1 sing N N 184 DC "C1'" "H1'" sing N N 185 DC N1 C2 sing N N 186 DC N1 C6 sing N N 187 DC C2 O2 doub N N 188 DC C2 N3 sing N N 189 DC N3 C4 doub N N 190 DC C4 N4 sing N N 191 DC C4 C5 sing N N 192 DC N4 H41 sing N N 193 DC N4 H42 sing N N 194 DC C5 C6 doub N N 195 DC C5 H5 sing N N 196 DC C6 H6 sing N N 197 DG OP3 P sing N N 198 DG OP3 HOP3 sing N N 199 DG P OP1 doub N N 200 DG P OP2 sing N N 201 DG P "O5'" sing N N 202 DG OP2 HOP2 sing N N 203 DG "O5'" "C5'" sing N N 204 DG "C5'" "C4'" sing N N 205 DG "C5'" "H5'" sing N N 206 DG "C5'" "H5''" sing N N 207 DG "C4'" "O4'" sing N N 208 DG "C4'" "C3'" sing N N 209 DG "C4'" "H4'" sing N N 210 DG "O4'" "C1'" sing N N 211 DG "C3'" "O3'" sing N N 212 DG "C3'" "C2'" sing N N 213 DG "C3'" "H3'" sing N N 214 DG "O3'" "HO3'" sing N N 215 DG "C2'" "C1'" sing N N 216 DG "C2'" "H2'" sing N N 217 DG "C2'" "H2''" sing N N 218 DG "C1'" N9 sing N N 219 DG "C1'" "H1'" sing N N 220 DG N9 C8 sing Y N 221 DG N9 C4 sing Y N 222 DG C8 N7 doub Y N 223 DG C8 H8 sing N N 224 DG N7 C5 sing Y N 225 DG C5 C6 sing N N 226 DG C5 C4 doub Y N 227 DG C6 O6 doub N N 228 DG C6 N1 sing N N 229 DG N1 C2 sing N N 230 DG N1 H1 sing N N 231 DG C2 N2 sing N N 232 DG C2 N3 doub N N 233 DG N2 H21 sing N N 234 DG N2 H22 sing N N 235 DG N3 C4 sing N N 236 DT OP3 P sing N N 237 DT OP3 HOP3 sing N N 238 DT P OP1 doub N N 239 DT P OP2 sing N N 240 DT P "O5'" sing N N 241 DT OP2 HOP2 sing N N 242 DT "O5'" "C5'" sing N N 243 DT "C5'" "C4'" sing N N 244 DT "C5'" "H5'" sing N N 245 DT "C5'" "H5''" sing N N 246 DT "C4'" "O4'" sing N N 247 DT "C4'" "C3'" sing N N 248 DT "C4'" "H4'" sing N N 249 DT "O4'" "C1'" sing N N 250 DT "C3'" "O3'" sing N N 251 DT "C3'" "C2'" sing N N 252 DT "C3'" "H3'" sing N N 253 DT "O3'" "HO3'" sing N N 254 DT "C2'" "C1'" sing N N 255 DT "C2'" "H2'" sing N N 256 DT "C2'" "H2''" sing N N 257 DT "C1'" N1 sing N N 258 DT "C1'" "H1'" sing N N 259 DT N1 C2 sing N N 260 DT N1 C6 sing N N 261 DT C2 O2 doub N N 262 DT C2 N3 sing N N 263 DT N3 C4 sing N N 264 DT N3 H3 sing N N 265 DT C4 O4 doub N N 266 DT C4 C5 sing N N 267 DT C5 C7 sing N N 268 DT C5 C6 doub N N 269 DT C7 H71 sing N N 270 DT C7 H72 sing N N 271 DT C7 H73 sing N N 272 DT C6 H6 sing N N 273 GLN N CA sing N N 274 GLN N H sing N N 275 GLN N H2 sing N N 276 GLN CA C sing N N 277 GLN CA CB sing N N 278 GLN CA HA sing N N 279 GLN C O doub N N 280 GLN C OXT sing N N 281 GLN CB CG sing N N 282 GLN CB HB2 sing N N 283 GLN CB HB3 sing N N 284 GLN CG CD sing N N 285 GLN CG HG2 sing N N 286 GLN CG HG3 sing N N 287 GLN CD OE1 doub N N 288 GLN CD NE2 sing N N 289 GLN NE2 HE21 sing N N 290 GLN NE2 HE22 sing N N 291 GLN OXT HXT sing N N 292 GLU N CA sing N N 293 GLU N H sing N N 294 GLU N H2 sing N N 295 GLU CA C sing N N 296 GLU CA CB sing N N 297 GLU CA HA sing N N 298 GLU C O doub N N 299 GLU C OXT sing N N 300 GLU CB CG sing N N 301 GLU CB HB2 sing N N 302 GLU CB HB3 sing N N 303 GLU CG CD sing N N 304 GLU CG HG2 sing N N 305 GLU CG HG3 sing N N 306 GLU CD OE1 doub N N 307 GLU CD OE2 sing N N 308 GLU OE2 HE2 sing N N 309 GLU OXT HXT sing N N 310 GLY N CA sing N N 311 GLY N H sing N N 312 GLY N H2 sing N N 313 GLY CA C sing N N 314 GLY CA HA2 sing N N 315 GLY CA HA3 sing N N 316 GLY C O doub N N 317 GLY C OXT sing N N 318 GLY OXT HXT sing N N 319 HIS N CA sing N N 320 HIS N H sing N N 321 HIS N H2 sing N N 322 HIS CA C sing N N 323 HIS CA CB sing N N 324 HIS CA HA sing N N 325 HIS C O doub N N 326 HIS C OXT sing N N 327 HIS CB CG sing N N 328 HIS CB HB2 sing N N 329 HIS CB HB3 sing N N 330 HIS CG ND1 sing Y N 331 HIS CG CD2 doub Y N 332 HIS ND1 CE1 doub Y N 333 HIS ND1 HD1 sing N N 334 HIS CD2 NE2 sing Y N 335 HIS CD2 HD2 sing N N 336 HIS CE1 NE2 sing Y N 337 HIS CE1 HE1 sing N N 338 HIS NE2 HE2 sing N N 339 HIS OXT HXT sing N N 340 HOH O H1 sing N N 341 HOH O H2 sing N N 342 ILE N CA sing N N 343 ILE N H sing N N 344 ILE N H2 sing N N 345 ILE CA C sing N N 346 ILE CA CB sing N N 347 ILE CA HA sing N N 348 ILE C O doub N N 349 ILE C OXT sing N N 350 ILE CB CG1 sing N N 351 ILE CB CG2 sing N N 352 ILE CB HB sing N N 353 ILE CG1 CD1 sing N N 354 ILE CG1 HG12 sing N N 355 ILE CG1 HG13 sing N N 356 ILE CG2 HG21 sing N N 357 ILE CG2 HG22 sing N N 358 ILE CG2 HG23 sing N N 359 ILE CD1 HD11 sing N N 360 ILE CD1 HD12 sing N N 361 ILE CD1 HD13 sing N N 362 ILE OXT HXT sing N N 363 LEU N CA sing N N 364 LEU N H sing N N 365 LEU N H2 sing N N 366 LEU CA C sing N N 367 LEU CA CB sing N N 368 LEU CA HA sing N N 369 LEU C O doub N N 370 LEU C OXT sing N N 371 LEU CB CG sing N N 372 LEU CB HB2 sing N N 373 LEU CB HB3 sing N N 374 LEU CG CD1 sing N N 375 LEU CG CD2 sing N N 376 LEU CG HG sing N N 377 LEU CD1 HD11 sing N N 378 LEU CD1 HD12 sing N N 379 LEU CD1 HD13 sing N N 380 LEU CD2 HD21 sing N N 381 LEU CD2 HD22 sing N N 382 LEU CD2 HD23 sing N N 383 LEU OXT HXT sing N N 384 LYS N CA sing N N 385 LYS N H sing N N 386 LYS N H2 sing N N 387 LYS CA C sing N N 388 LYS CA CB sing N N 389 LYS CA HA sing N N 390 LYS C O doub N N 391 LYS C OXT sing N N 392 LYS CB CG sing N N 393 LYS CB HB2 sing N N 394 LYS CB HB3 sing N N 395 LYS CG CD sing N N 396 LYS CG HG2 sing N N 397 LYS CG HG3 sing N N 398 LYS CD CE sing N N 399 LYS CD HD2 sing N N 400 LYS CD HD3 sing N N 401 LYS CE NZ sing N N 402 LYS CE HE2 sing N N 403 LYS CE HE3 sing N N 404 LYS NZ HZ1 sing N N 405 LYS NZ HZ2 sing N N 406 LYS NZ HZ3 sing N N 407 LYS OXT HXT sing N N 408 MET N CA sing N N 409 MET N H sing N N 410 MET N H2 sing N N 411 MET CA C sing N N 412 MET CA CB sing N N 413 MET CA HA sing N N 414 MET C O doub N N 415 MET C OXT sing N N 416 MET CB CG sing N N 417 MET CB HB2 sing N N 418 MET CB HB3 sing N N 419 MET CG SD sing N N 420 MET CG HG2 sing N N 421 MET CG HG3 sing N N 422 MET SD CE sing N N 423 MET CE HE1 sing N N 424 MET CE HE2 sing N N 425 MET CE HE3 sing N N 426 MET OXT HXT sing N N 427 PHE N CA sing N N 428 PHE N H sing N N 429 PHE N H2 sing N N 430 PHE CA C sing N N 431 PHE CA CB sing N N 432 PHE CA HA sing N N 433 PHE C O doub N N 434 PHE C OXT sing N N 435 PHE CB CG sing N N 436 PHE CB HB2 sing N N 437 PHE CB HB3 sing N N 438 PHE CG CD1 doub Y N 439 PHE CG CD2 sing Y N 440 PHE CD1 CE1 sing Y N 441 PHE CD1 HD1 sing N N 442 PHE CD2 CE2 doub Y N 443 PHE CD2 HD2 sing N N 444 PHE CE1 CZ doub Y N 445 PHE CE1 HE1 sing N N 446 PHE CE2 CZ sing Y N 447 PHE CE2 HE2 sing N N 448 PHE CZ HZ sing N N 449 PHE OXT HXT sing N N 450 PRO N CA sing N N 451 PRO N CD sing N N 452 PRO N H sing N N 453 PRO CA C sing N N 454 PRO CA CB sing N N 455 PRO CA HA sing N N 456 PRO C O doub N N 457 PRO C OXT sing N N 458 PRO CB CG sing N N 459 PRO CB HB2 sing N N 460 PRO CB HB3 sing N N 461 PRO CG CD sing N N 462 PRO CG HG2 sing N N 463 PRO CG HG3 sing N N 464 PRO CD HD2 sing N N 465 PRO CD HD3 sing N N 466 PRO OXT HXT sing N N 467 SER N CA sing N N 468 SER N H sing N N 469 SER N H2 sing N N 470 SER CA C sing N N 471 SER CA CB sing N N 472 SER CA HA sing N N 473 SER C O doub N N 474 SER C OXT sing N N 475 SER CB OG sing N N 476 SER CB HB2 sing N N 477 SER CB HB3 sing N N 478 SER OG HG sing N N 479 SER OXT HXT sing N N 480 THR N CA sing N N 481 THR N H sing N N 482 THR N H2 sing N N 483 THR CA C sing N N 484 THR CA CB sing N N 485 THR CA HA sing N N 486 THR C O doub N N 487 THR C OXT sing N N 488 THR CB OG1 sing N N 489 THR CB CG2 sing N N 490 THR CB HB sing N N 491 THR OG1 HG1 sing N N 492 THR CG2 HG21 sing N N 493 THR CG2 HG22 sing N N 494 THR CG2 HG23 sing N N 495 THR OXT HXT sing N N 496 TRP N CA sing N N 497 TRP N H sing N N 498 TRP N H2 sing N N 499 TRP CA C sing N N 500 TRP CA CB sing N N 501 TRP CA HA sing N N 502 TRP C O doub N N 503 TRP C OXT sing N N 504 TRP CB CG sing N N 505 TRP CB HB2 sing N N 506 TRP CB HB3 sing N N 507 TRP CG CD1 doub Y N 508 TRP CG CD2 sing Y N 509 TRP CD1 NE1 sing Y N 510 TRP CD1 HD1 sing N N 511 TRP CD2 CE2 doub Y N 512 TRP CD2 CE3 sing Y N 513 TRP NE1 CE2 sing Y N 514 TRP NE1 HE1 sing N N 515 TRP CE2 CZ2 sing Y N 516 TRP CE3 CZ3 doub Y N 517 TRP CE3 HE3 sing N N 518 TRP CZ2 CH2 doub Y N 519 TRP CZ2 HZ2 sing N N 520 TRP CZ3 CH2 sing Y N 521 TRP CZ3 HZ3 sing N N 522 TRP CH2 HH2 sing N N 523 TRP OXT HXT sing N N 524 TYR N CA sing N N 525 TYR N H sing N N 526 TYR N H2 sing N N 527 TYR CA C sing N N 528 TYR CA CB sing N N 529 TYR CA HA sing N N 530 TYR C O doub N N 531 TYR C OXT sing N N 532 TYR CB CG sing N N 533 TYR CB HB2 sing N N 534 TYR CB HB3 sing N N 535 TYR CG CD1 doub Y N 536 TYR CG CD2 sing Y N 537 TYR CD1 CE1 sing Y N 538 TYR CD1 HD1 sing N N 539 TYR CD2 CE2 doub Y N 540 TYR CD2 HD2 sing N N 541 TYR CE1 CZ doub Y N 542 TYR CE1 HE1 sing N N 543 TYR CE2 CZ sing Y N 544 TYR CE2 HE2 sing N N 545 TYR CZ OH sing N N 546 TYR OH HH sing N N 547 TYR OXT HXT sing N N 548 VAL N CA sing N N 549 VAL N H sing N N 550 VAL N H2 sing N N 551 VAL CA C sing N N 552 VAL CA CB sing N N 553 VAL CA HA sing N N 554 VAL C O doub N N 555 VAL C OXT sing N N 556 VAL CB CG1 sing N N 557 VAL CB CG2 sing N N 558 VAL CB HB sing N N 559 VAL CG1 HG11 sing N N 560 VAL CG1 HG12 sing N N 561 VAL CG1 HG13 sing N N 562 VAL CG2 HG21 sing N N 563 VAL CG2 HG22 sing N N 564 VAL CG2 HG23 sing N N 565 VAL OXT HXT sing N N 566 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4ZYD 'double helix' 4ZYD 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 1 1_555 C DC 13 1_555 0.163 -0.191 0.291 5.351 -1.098 6.570 1 B_DG1:DC26_C B 1 ? C 26 ? 19 1 1 B DC 2 1_555 C DG 12 1_555 -0.139 -0.067 0.122 -1.315 -8.795 -1.923 2 B_DC2:DG25_C B 2 ? C 25 ? 19 1 1 B DC 3 1_555 C DG 11 1_555 -0.088 -0.085 -0.047 -1.437 -6.034 2.684 3 B_DC3:DG24_C B 3 ? C 24 ? 19 1 1 B DA 4 1_555 C DT 10 1_555 -0.476 0.029 -0.123 -0.015 -12.484 2.167 4 B_DA4:DT23_C B 4 ? C 23 ? 20 1 1 B DT 5 1_555 C DA 9 1_555 -0.351 -0.019 0.285 -2.453 -8.338 -2.464 5 B_DT5:DA22_C B 5 ? C 22 ? 20 1 1 B DG 6 1_555 C DC 8 1_555 0.069 0.119 -0.134 -0.058 1.476 -3.542 6 B_DG6:DC21_C B 6 ? C 21 ? 19 1 1 B DC 8 1_555 C DG 6 1_555 0.312 -0.184 0.437 -10.558 -9.505 -0.792 7 B_DC8:DG19_C B 8 ? C 19 ? 19 1 1 B DT 9 1_555 C DA 5 1_555 0.380 -0.092 -0.033 -2.188 -3.484 3.171 8 B_DT9:DA18_C B 9 ? C 18 ? 20 1 1 B DA 10 1_555 C DT 4 1_555 -0.047 -0.029 -0.283 -2.849 -12.832 11.009 9 B_DA10:DT17_C B 10 ? C 17 ? 20 1 1 B DG 11 1_555 C DC 3 1_555 -0.413 0.041 -0.285 -11.880 -13.161 8.582 10 B_DG11:DC16_C B 11 ? C 16 ? 19 1 1 B DT 12 1_555 C DA 2 1_555 0.346 -0.004 0.128 -1.914 -10.004 7.504 11 B_DT12:DA15_C B 12 ? C 15 ? 20 1 1 B DA 13 1_555 C DT 1 1_555 0.760 -0.516 0.025 6.907 -6.071 -8.381 12 B_DA13:DT14_C B 13 ? C 14 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 1 1_555 C DC 13 1_555 B DC 2 1_555 C DG 12 1_555 -0.800 -0.496 3.396 1.061 1.659 33.383 -1.145 1.570 3.342 2.886 -1.845 33.440 1 BB_DG1DC2:DG25DC26_CC B 1 ? C 26 ? B 2 ? C 25 ? 1 B DC 2 1_555 C DG 12 1_555 B DC 3 1_555 C DG 11 1_555 0.890 -0.147 3.256 4.030 8.227 34.963 -1.408 -0.862 3.219 13.411 -6.569 36.107 2 BB_DC2DC3:DG24DG25_CC B 2 ? C 25 ? B 3 ? C 24 ? 1 B DC 3 1_555 C DG 11 1_555 B DA 4 1_555 C DT 10 1_555 -0.142 0.356 3.261 0.354 7.786 34.866 -0.557 0.284 3.261 12.796 -0.581 35.700 3 BB_DC3DA4:DT23DG24_CC B 3 ? C 24 ? B 4 ? C 23 ? 1 B DA 4 1_555 C DT 10 1_555 B DT 5 1_555 C DA 9 1_555 -0.198 -0.682 3.399 -3.602 -0.877 31.395 -1.082 -0.334 3.417 -1.614 6.627 31.607 4 BB_DA4DT5:DA22DT23_CC B 4 ? C 23 ? B 5 ? C 22 ? 1 B DT 5 1_555 C DA 9 1_555 B DG 6 1_555 C DC 8 1_555 0.310 0.657 3.442 6.093 6.260 37.666 0.162 0.339 3.509 9.540 -9.284 38.630 5 BB_DT5DG6:DC21DA22_CC B 5 ? C 22 ? B 6 ? C 21 ? 1 B DG 6 1_555 C DC 8 1_555 B DC 8 1_555 C DG 6 1_555 1.323 -1.538 7.084 -2.801 27.814 52.368 -4.553 -1.647 5.625 29.279 2.949 58.894 6 BB_DG6DC8:DG19DC21_CC B 6 ? C 21 ? B 8 ? C 19 ? 1 B DC 8 1_555 C DG 6 1_555 B DT 9 1_555 C DA 5 1_555 0.315 -0.552 3.101 4.160 1.350 33.643 -1.153 0.096 3.093 2.320 -7.151 33.918 7 BB_DC8DT9:DA18DG19_CC B 8 ? C 19 ? B 9 ? C 18 ? 1 B DT 9 1_555 C DA 5 1_555 B DA 10 1_555 C DT 4 1_555 0.094 -0.198 3.296 3.641 4.761 32.778 -1.143 0.446 3.228 8.350 -6.385 33.307 8 BB_DT9DA10:DT17DA18_CC B 9 ? C 18 ? B 10 ? C 17 ? 1 B DA 10 1_555 C DT 4 1_555 B DG 11 1_555 C DC 3 1_555 -0.406 -0.150 3.453 -3.270 8.880 32.146 -1.809 0.134 3.320 15.619 5.751 33.474 9 BB_DA10DG11:DC16DT17_CC B 10 ? C 17 ? B 11 ? C 16 ? 1 B DG 11 1_555 C DC 3 1_555 B DT 12 1_555 C DA 2 1_555 -0.200 -0.393 3.093 -2.944 6.126 28.276 -2.042 -0.207 2.949 12.316 5.919 29.066 10 BB_DG11DT12:DA15DC16_CC B 11 ? C 16 ? B 12 ? C 15 ? 1 B DT 12 1_555 C DA 2 1_555 B DA 13 1_555 C DT 1 1_555 -0.464 -0.112 3.187 1.963 9.635 33.198 -1.628 1.074 3.007 16.421 -3.345 34.584 11 BB_DT12DA13:DT14DA15_CC B 12 ? C 15 ? B 13 ? C 14 ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1WRJ _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 4ZYD _atom_sites.fract_transf_matrix[1][1] 0.023944 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015179 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010253 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_