HEADER TRANSFERASE/TRANSFERASE INHIBITOR 22-MAY-15 4ZYU TITLE HUMAN GAR TRANSFORMYLASE IN COMPLEX WITH GAR AND N-{4-[4-(2-AMINO-4- TITLE 2 OXO-3,4-DIHYDROTHIENO[2,3-D]PYRIMIDIN-6-YL)-BUTYL]BENZOYL}-L-GLUTAMIC TITLE 3 ACID (AGF50) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: GAR TRANSFORMYLASE DOMAIN; COMPND 5 EC: 2.1.2.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GART, PGFT, PRGS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS GAR TRANSFORMYLASE, ANTIFOLATE, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.M.DEIS,C.E.DANN III REVDAT 5 27-SEP-23 4ZYU 1 REMARK REVDAT 4 04-DEC-19 4ZYU 1 REMARK REVDAT 3 20-SEP-17 4ZYU 1 REMARK REVDAT 2 22-FEB-17 4ZYU 1 JRNL REVDAT 1 20-APR-16 4ZYU 0 JRNL AUTH S.M.DEIS,A.DOSHI,Z.HOU,L.H.MATHERLY,A.GANGJEE,C.E.DANN JRNL TITL STRUCTURAL AND ENZYMATIC ANALYSIS OF TUMOR-TARGETED JRNL TITL 2 ANTIFOLATES THAT INHIBIT GLYCINAMIDE RIBONUCLEOTIDE JRNL TITL 3 FORMYLTRANSFERASE. JRNL REF BIOCHEMISTRY V. 55 4574 2016 JRNL REFN ISSN 1520-4995 JRNL PMID 27439469 JRNL DOI 10.1021/ACS.BIOCHEM.6B00412 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX PHENIX.REFINE 1.9 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 23926 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.290 REMARK 3 FREE R VALUE TEST SET COUNT : 1983 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.9092 - 4.6934 0.95 1652 147 0.1591 0.2096 REMARK 3 2 4.6934 - 3.7262 1.00 1644 156 0.1507 0.1747 REMARK 3 3 3.7262 - 3.2554 1.00 1627 146 0.1710 0.2189 REMARK 3 4 3.2554 - 2.9579 1.00 1654 144 0.1888 0.1991 REMARK 3 5 2.9579 - 2.7459 1.00 1595 147 0.1949 0.2279 REMARK 3 6 2.7459 - 2.5840 1.00 1607 146 0.1990 0.2088 REMARK 3 7 2.5840 - 2.4547 1.00 1621 144 0.1911 0.2126 REMARK 3 8 2.4547 - 2.3478 1.00 1579 143 0.1916 0.2153 REMARK 3 9 2.3478 - 2.2574 1.00 1605 147 0.1742 0.2044 REMARK 3 10 2.2574 - 2.1795 1.00 1618 142 0.1785 0.1941 REMARK 3 11 2.1795 - 2.1114 1.00 1583 145 0.1838 0.2119 REMARK 3 12 2.1114 - 2.0510 1.00 1591 143 0.1973 0.2120 REMARK 3 13 2.0510 - 1.9971 0.93 1490 134 0.2245 0.2514 REMARK 3 14 1.9971 - 1.9483 0.68 1077 99 0.2249 0.2389 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1647 REMARK 3 ANGLE : 1.078 2253 REMARK 3 CHIRALITY : 0.045 265 REMARK 3 PLANARITY : 0.005 294 REMARK 3 DIHEDRAL : 12.656 595 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 808 THROUGH 818 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.4147 -25.5499 -26.3368 REMARK 3 T TENSOR REMARK 3 T11: 0.4024 T22: 0.2629 REMARK 3 T33: 0.2669 T12: -0.1564 REMARK 3 T13: -0.1073 T23: 0.1265 REMARK 3 L TENSOR REMARK 3 L11: 2.0334 L22: 1.6426 REMARK 3 L33: 5.7194 L12: -1.1544 REMARK 3 L13: 1.4147 L23: -2.7494 REMARK 3 S TENSOR REMARK 3 S11: -0.0190 S12: 0.4224 S13: 0.0231 REMARK 3 S21: -0.6761 S22: 0.1693 S23: 0.4221 REMARK 3 S31: 0.6576 S32: -0.2320 S33: -0.2356 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 819 THROUGH 835 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.9996 -22.3912 -24.0306 REMARK 3 T TENSOR REMARK 3 T11: 0.2868 T22: 0.1206 REMARK 3 T33: 0.1742 T12: -0.0043 REMARK 3 T13: 0.0048 T23: 0.0535 REMARK 3 L TENSOR REMARK 3 L11: 5.1346 L22: 0.5951 REMARK 3 L33: 3.4789 L12: 1.1460 REMARK 3 L13: 4.1707 L23: 1.0414 REMARK 3 S TENSOR REMARK 3 S11: 0.1204 S12: 0.1420 S13: -0.3756 REMARK 3 S21: -0.1924 S22: -0.0126 S23: -0.1435 REMARK 3 S31: 0.3925 S32: 0.2404 S33: -0.1222 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 836 THROUGH 856 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.2766 -31.0423 -30.0430 REMARK 3 T TENSOR REMARK 3 T11: 0.7465 T22: 0.2062 REMARK 3 T33: 0.4305 T12: -0.0961 REMARK 3 T13: -0.1545 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 5.4265 L22: 0.9133 REMARK 3 L33: 3.8658 L12: 1.2658 REMARK 3 L13: 1.1061 L23: 1.7579 REMARK 3 S TENSOR REMARK 3 S11: -0.1092 S12: 0.5879 S13: -0.8066 REMARK 3 S21: -0.9100 S22: 0.0836 S23: 0.3026 REMARK 3 S31: 0.5214 S32: -0.2387 S33: -0.0880 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 857 THROUGH 870 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.2505 -33.2472 -28.3930 REMARK 3 T TENSOR REMARK 3 T11: 0.8338 T22: 0.4458 REMARK 3 T33: 0.9272 T12: -0.2104 REMARK 3 T13: -0.3968 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 1.2417 L22: 0.0406 REMARK 3 L33: 1.6699 L12: 0.0694 REMARK 3 L13: -0.9225 L23: 0.1400 REMARK 3 S TENSOR REMARK 3 S11: -0.5389 S12: 0.6169 S13: 0.4816 REMARK 3 S21: -0.9081 S22: 0.2164 S23: 0.9736 REMARK 3 S31: -0.0395 S32: -0.5907 S33: 0.2857 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 871 THROUGH 884 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5317 -28.8393 -22.0625 REMARK 3 T TENSOR REMARK 3 T11: 0.4369 T22: 0.6090 REMARK 3 T33: 0.6837 T12: -0.3029 REMARK 3 T13: -0.1187 T23: 0.2658 REMARK 3 L TENSOR REMARK 3 L11: 3.7163 L22: 2.5079 REMARK 3 L33: 1.7450 L12: 1.2222 REMARK 3 L13: 0.1017 L23: -0.5623 REMARK 3 S TENSOR REMARK 3 S11: -0.1797 S12: 0.2353 S13: 0.0666 REMARK 3 S21: -0.1945 S22: 0.1632 S23: 0.3141 REMARK 3 S31: 0.0295 S32: -0.1974 S33: -0.1547 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 885 THROUGH 906 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.4939 -22.5545 -22.3364 REMARK 3 T TENSOR REMARK 3 T11: 0.2631 T22: 0.4619 REMARK 3 T33: 0.3656 T12: -0.1640 REMARK 3 T13: -0.0789 T23: 0.2266 REMARK 3 L TENSOR REMARK 3 L11: 1.7456 L22: 0.5898 REMARK 3 L33: 1.6891 L12: 0.6784 REMARK 3 L13: -1.1778 L23: -0.8419 REMARK 3 S TENSOR REMARK 3 S11: -0.0667 S12: 0.2528 S13: 0.0938 REMARK 3 S21: -0.1984 S22: 0.3489 S23: 0.4767 REMARK 3 S31: 0.1877 S32: -0.6972 S33: -0.3586 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 907 THROUGH 945 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.0122 -9.1127 -32.7296 REMARK 3 T TENSOR REMARK 3 T11: 0.0957 T22: 0.2460 REMARK 3 T33: 0.1770 T12: -0.0437 REMARK 3 T13: 0.0005 T23: 0.0621 REMARK 3 L TENSOR REMARK 3 L11: 0.5943 L22: 2.4804 REMARK 3 L33: 1.7836 L12: 0.6393 REMARK 3 L13: -0.9771 L23: -0.5321 REMARK 3 S TENSOR REMARK 3 S11: -0.0480 S12: -0.1099 S13: -0.2005 REMARK 3 S21: 0.0067 S22: 0.0703 S23: 0.3399 REMARK 3 S31: 0.1511 S32: -0.4476 S33: -0.0506 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 946 THROUGH 954 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8218 -10.6618 -24.6867 REMARK 3 T TENSOR REMARK 3 T11: 0.2058 T22: 0.5446 REMARK 3 T33: 0.3978 T12: -0.0105 REMARK 3 T13: 0.0749 T23: 0.2032 REMARK 3 L TENSOR REMARK 3 L11: 5.8940 L22: 2.1775 REMARK 3 L33: 3.6718 L12: -0.2642 REMARK 3 L13: -2.1923 L23: 2.2740 REMARK 3 S TENSOR REMARK 3 S11: 0.0329 S12: 0.3361 S13: 0.3085 REMARK 3 S21: 0.1566 S22: -0.1010 S23: 0.6320 REMARK 3 S31: 0.1194 S32: -0.5354 S33: 0.0556 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 955 THROUGH 968 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.3322 -4.7143 -39.0134 REMARK 3 T TENSOR REMARK 3 T11: 0.1202 T22: 0.1465 REMARK 3 T33: 0.0726 T12: -0.0445 REMARK 3 T13: -0.0022 T23: 0.0292 REMARK 3 L TENSOR REMARK 3 L11: 1.4597 L22: 1.1479 REMARK 3 L33: 6.2744 L12: -0.9263 REMARK 3 L13: 0.0733 L23: -0.2839 REMARK 3 S TENSOR REMARK 3 S11: -0.0501 S12: 0.1371 S13: -0.0330 REMARK 3 S21: -0.0656 S22: 0.0471 S23: 0.0809 REMARK 3 S31: -0.2598 S32: 0.1840 S33: -0.0082 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 969 THROUGH 992 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.0995 -13.4842 -32.3750 REMARK 3 T TENSOR REMARK 3 T11: 0.1083 T22: 0.1187 REMARK 3 T33: 0.1371 T12: -0.0395 REMARK 3 T13: -0.0043 T23: 0.0313 REMARK 3 L TENSOR REMARK 3 L11: 0.4766 L22: 1.0160 REMARK 3 L33: 8.5854 L12: -0.3705 REMARK 3 L13: 0.1658 L23: -1.7277 REMARK 3 S TENSOR REMARK 3 S11: 0.0115 S12: -0.0224 S13: -0.2636 REMARK 3 S21: 0.0712 S22: 0.0249 S23: 0.1033 REMARK 3 S31: 0.2509 S32: -0.0151 S33: -0.0100 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 993 THROUGH 1007 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.1655 -8.1394 -13.0260 REMARK 3 T TENSOR REMARK 3 T11: 0.4349 T22: 0.3747 REMARK 3 T33: 0.2552 T12: 0.1082 REMARK 3 T13: 0.0583 T23: 0.0240 REMARK 3 L TENSOR REMARK 3 L11: 7.8134 L22: 7.1538 REMARK 3 L33: 6.9720 L12: -2.5282 REMARK 3 L13: -2.5587 L23: 2.4683 REMARK 3 S TENSOR REMARK 3 S11: -0.4685 S12: -0.8237 S13: 0.4108 REMARK 3 S21: 1.0350 S22: 0.3446 S23: 0.7207 REMARK 3 S31: -0.9152 S32: -0.9118 S33: 0.0765 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZYU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000210121. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0001 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK SI(111) SAGITALLY REMARK 200 FOCUSED MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24596 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.37400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 4X74 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18 % PEG4000, 2 % PEG400, 0.33 M NACL, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.31400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.65700 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.65700 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 67.31400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 807 REMARK 465 LYS A 1008 REMARK 465 GLU A 1009 REMARK 465 GLU A 1010 REMARK 465 HIS A 1011 REMARK 465 HIS A 1012 REMARK 465 HIS A 1013 REMARK 465 HIS A 1014 REMARK 465 HIS A 1015 REMARK 465 HIS A 1016 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 844 CG CD CE NZ REMARK 470 LYS A 866 CG CD CE NZ REMARK 470 LYS A 869 CG CD CE NZ REMARK 470 GLU A1000 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1291 O HOH A 1299 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 896 40.39 -105.95 REMARK 500 PRO A 916 49.30 -85.23 REMARK 500 THR A 939 -154.20 -123.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1323 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH A1324 DISTANCE = 6.68 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GAR A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3YA A 1102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EW2 RELATED DB: PDB REMARK 900 4EW2 IS THE SAME PROTEIN COMPLEXED WITH 10S-METHYLTHIO-DDATHF REMARK 900 RELATED ID: 4EW3 RELATED DB: PDB REMARK 900 4EW3 IS THE SAME PROTEIN COMPLEXED WITH 10R-METHYLTHIO-DDATHF REMARK 900 RELATED ID: 1RBM RELATED DB: PDB REMARK 900 1RBM IS THE SAME PROTEIN COMPLEXED WITH POLYGLUTAMINATED 10- REMARK 900 (TRIFLUOROACETYL)-5,10-DIDEAZAACYCLIC-5,6,7,8-TETRAHYDROFOLIC ACID REMARK 900 RELATED ID: 1RBQ RELATED DB: PDB REMARK 900 1RBQ IS THE SAME PROTEIN COMPLEXED WITH 10-(TRIFLUOROACETYL)-5,10- REMARK 900 DIDEAZAACYCLIC-5,6,7,8-TETRAHYDROFOLIC ACID REMARK 900 RELATED ID: 1RBY RELATED DB: PDB REMARK 900 1RBY IS THE SAME PROTEIN COMPLEXED WITH 10-(TRIFLUOROACETYL)-5,10- REMARK 900 DIDEAZAACYCLIC-5,6,7,8-TETRAHYDROFOLIC ACID AND BETA-GAR REMARK 900 RELATED ID: 1RBZ RELATED DB: PDB REMARK 900 1RBZ IS THE SAME PROTEIN COMPLEXED WITH POLYGLUTAMINATED 10- REMARK 900 (TRIFLUOROACETYL)-5,10-DIDEAZAACYCLIC-5,6,7,8-TETRAHYDROFOLIC ACID REMARK 900 RELATED ID: 1RC0 RELATED DB: PDB REMARK 900 1RC0 IS THE SAME PROTEIN COMPLEXED WITH POLYGLUTAMINATED 10- REMARK 900 (TRIFLUOROACETYL)-5,10-DIDEAZAACYCLIC-5,6,7,8-TETRAHYDROFOLIC ACID REMARK 900 RELATED ID: 1RC1 RELATED DB: PDB REMARK 900 1RC1 IS THE SAME PROTEIN COMPLEXED WITH POLYGLUTAMINATED 10- REMARK 900 (TRIFLUOROACETYL)-5,10-DIDEAZAACYCLIC-5,6,7,8-TETRAHYDROFOLIC ACID REMARK 900 RELATED ID: 1NJS RELATED DB: PDB REMARK 900 1NJS IS THE SAME PROTEIN COMPLEXED WITH A HYDROLYZED FORM OF 10- REMARK 900 (TRIFLUOROACETYL)-5,10-DIDEAZAACYCLIC-5,6,7,8-TETRAHYDROFOLIC ACID REMARK 900 RELATED ID: 1MEJ RELATED DB: PDB REMARK 900 1MEJ IS THE SAME PROTEIN IN APO FORM AT PH 8.5 REMARK 900 RELATED ID: 1MEO RELATED DB: PDB REMARK 900 1MEO IS THE SAME PROTEIN IN APO FORM AT PH 4.2 REMARK 900 RELATED ID: 1ZLX RELATED DB: PDB REMARK 900 1ZLX IS THE SAME PROTEIN IN APO FORM REMARK 900 RELATED ID: 1ZLY RELATED DB: PDB REMARK 900 1ZLY IS THE SAME PROTEIN COMPLEXED WITH 4-[(4-{[(2-AMINO-4-OXO-3,4- REMARK 900 DIHYDROQUINAZOLIN- 6-YL)METHYL]AMINO}BENZOYL)AMINO]BUTANOIC ACID REMARK 900 AND 5-O-PHOSPHONO-BETA-D-RIBOFURANOSYLAMINE REMARK 900 RELATED ID: 4ZYT RELATED DB: PDB REMARK 900 RELATED ID: 4ZYV RELATED DB: PDB REMARK 900 RELATED ID: 4ZYW RELATED DB: PDB REMARK 900 RELATED ID: 4ZYX RELATED DB: PDB REMARK 900 RELATED ID: 4ZYY RELATED DB: PDB REMARK 900 RELATED ID: 4ZYZ RELATED DB: PDB REMARK 900 RELATED ID: 4ZZ0 RELATED DB: PDB REMARK 900 RELATED ID: 4ZZ1 RELATED DB: PDB REMARK 900 RELATED ID: 4ZZ2 RELATED DB: PDB REMARK 900 RELATED ID: 4ZZ3 RELATED DB: PDB DBREF 4ZYU A 808 1010 UNP P22102 PUR2_HUMAN 808 1010 SEQADV 4ZYU MET A 807 UNP P22102 INITIATING METHIONINE SEQADV 4ZYU HIS A 1011 UNP P22102 EXPRESSION TAG SEQADV 4ZYU HIS A 1012 UNP P22102 EXPRESSION TAG SEQADV 4ZYU HIS A 1013 UNP P22102 EXPRESSION TAG SEQADV 4ZYU HIS A 1014 UNP P22102 EXPRESSION TAG SEQADV 4ZYU HIS A 1015 UNP P22102 EXPRESSION TAG SEQADV 4ZYU HIS A 1016 UNP P22102 EXPRESSION TAG SEQRES 1 A 210 MET ALA ARG VAL ALA VAL LEU ILE SER GLY THR GLY SER SEQRES 2 A 210 ASN LEU GLN ALA LEU ILE ASP SER THR ARG GLU PRO ASN SEQRES 3 A 210 SER SER ALA GLN ILE ASP ILE VAL ILE SER ASN LYS ALA SEQRES 4 A 210 ALA VAL ALA GLY LEU ASP LYS ALA GLU ARG ALA GLY ILE SEQRES 5 A 210 PRO THR ARG VAL ILE ASN HIS LYS LEU TYR LYS ASN ARG SEQRES 6 A 210 VAL GLU PHE ASP SER ALA ILE ASP LEU VAL LEU GLU GLU SEQRES 7 A 210 PHE SER ILE ASP ILE VAL CYS LEU ALA GLY PHE MET ARG SEQRES 8 A 210 ILE LEU SER GLY PRO PHE VAL GLN LYS TRP ASN GLY LYS SEQRES 9 A 210 MET LEU ASN ILE HIS PRO SER LEU LEU PRO SER PHE LYS SEQRES 10 A 210 GLY SER ASN ALA HIS GLU GLN ALA LEU GLU THR GLY VAL SEQRES 11 A 210 THR VAL THR GLY CYS THR VAL HIS PHE VAL ALA GLU ASP SEQRES 12 A 210 VAL ASP ALA GLY GLN ILE ILE LEU GLN GLU ALA VAL PRO SEQRES 13 A 210 VAL LYS ARG GLY ASP THR VAL ALA THR LEU SER GLU ARG SEQRES 14 A 210 VAL LYS LEU ALA GLU HIS LYS ILE PHE PRO ALA ALA LEU SEQRES 15 A 210 GLN LEU VAL ALA SER GLY THR VAL GLN LEU GLY GLU ASN SEQRES 16 A 210 GLY LYS ILE CYS TRP VAL LYS GLU GLU HIS HIS HIS HIS SEQRES 17 A 210 HIS HIS HET GAR A1101 18 HET 3YA A1102 33 HETNAM GAR GLYCINAMIDE RIBONUCLEOTIDE HETNAM 3YA N-{4-[4-(2-AMINO-4-OXO-1,4-DIHYDROTHIENO[2,3- HETNAM 2 3YA D]PYRIMIDIN-6-YL)BUTYL]BENZOYL}-L-GLUTAMIC ACID FORMUL 2 GAR C7 H13 N2 O8 P 2- FORMUL 3 3YA C22 H24 N4 O6 S FORMUL 4 HOH *124(H2 O) HELIX 1 AA1 GLY A 818 ARG A 829 1 12 HELIX 2 AA2 VAL A 847 ALA A 856 1 10 HELIX 3 AA3 ASN A 870 PHE A 885 1 16 HELIX 4 AA4 SER A 900 TRP A 907 1 8 HELIX 5 AA5 ASN A 926 GLY A 935 1 10 HELIX 6 AA6 THR A 968 SER A 993 1 26 SHEET 1 AA1 7 THR A 860 VAL A 862 0 SHEET 2 AA1 7 GLN A 836 SER A 842 1 N SER A 842 O ARG A 861 SHEET 3 AA1 7 ARG A 809 ILE A 814 1 N VAL A 810 O GLN A 836 SHEET 4 AA1 7 ILE A 889 LEU A 892 1 O CYS A 891 N ALA A 811 SHEET 5 AA1 7 MET A 911 HIS A 915 1 O LEU A 912 N LEU A 892 SHEET 6 AA1 7 VAL A 938 PHE A 945 -1 O THR A 942 N HIS A 915 SHEET 7 AA1 7 ILE A 955 PRO A 962 -1 O ILE A 956 N VAL A 943 SHEET 1 AA2 2 VAL A 996 LEU A 998 0 SHEET 2 AA2 2 ILE A1004 TRP A1006 -1 O CYS A1005 N GLN A 997 CISPEP 1 LEU A 919 PRO A 920 0 11.92 SITE 1 AC1 16 THR A 817 GLY A 818 SER A 819 ASN A 820 SITE 2 AC1 16 GLY A 894 ILE A 914 PRO A 916 LYS A 977 SITE 3 AC1 16 GLU A 980 3YA A1102 HOH A1201 HOH A1208 SITE 4 AC1 16 HOH A1229 HOH A1243 HOH A1260 HOH A1273 SITE 1 AC2 16 ARG A 871 PHE A 895 MET A 896 ARG A 897 SITE 2 AC2 16 ILE A 898 LEU A 899 VAL A 904 ASN A 913 SITE 3 AC2 16 VAL A 946 ALA A 947 GLU A 948 VAL A 950 SITE 4 AC2 16 ASP A 951 GAR A1101 HOH A1201 HOH A1238 CRYST1 75.202 75.202 100.971 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013298 0.007677 0.000000 0.00000 SCALE2 0.000000 0.015355 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009904 0.00000