HEADER TRANSPORT PROTEIN 22-MAY-15 4ZZA TITLE RAFFINOSE AND PANOSE BINDING PROTEIN FROM BIFIDOBACTERIUM ANIMALIS TITLE 2 SUBSP. LACTIS BL-04, BOUND WITH RAFFINOSE, SELENOMETHIONINE TITLE 3 DERIVATIVE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUGAR BINDING PROTEIN OF ABC TRANSPORTER SYSTEM; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 42-437; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BIFIDOBACTERIUM ANIMALIS SUBSP. LACTIS BL-04; SOURCE 3 ORGANISM_TAXID: 580050; SOURCE 4 GENE: BALAC_1599; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI B; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 37762; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: DE3 KEYWDS RAFFINOSE, ABC TRANSPORTER, COMPLEX, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.FREDSLUND,M.EJBY,J.M.ANDERSEN,D.J.SLOTBOOM,M.ABOU HACHEM REVDAT 3 29-JUL-20 4ZZA 1 COMPND REMARK HET HETNAM REVDAT 3 2 1 FORMUL LINK SITE ATOM REVDAT 2 16-AUG-17 4ZZA 1 JRNL REMARK REVDAT 1 29-JUN-16 4ZZA 0 JRNL AUTH M.EJBY,F.FREDSLUND,J.M.ANDERSEN,A.VUJICIC ZAGAR, JRNL AUTH 2 J.R.HENRIKSEN,T.L.ANDERSEN,B.SVENSSON,D.J.SLOTBOOM, JRNL AUTH 3 M.ABOU HACHEM JRNL TITL AN ATP BINDING CASSETTE TRANSPORTER MEDIATES THE UPTAKE OF JRNL TITL 2 ALPHA-(1,6)-LINKED DIETARY OLIGOSACCHARIDES IN JRNL TITL 3 BIFIDOBACTERIUM AND CORRELATES WITH COMPETITIVE GROWTH ON JRNL TITL 4 THESE SUBSTRATES. JRNL REF J. BIOL. CHEM. V. 291 20220 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27502277 JRNL DOI 10.1074/JBC.M116.746529 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 48981 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2449 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3170 - 5.1890 0.98 2915 154 0.2160 0.2373 REMARK 3 2 5.1890 - 4.1194 0.99 2797 147 0.1439 0.1663 REMARK 3 3 4.1194 - 3.5989 1.00 2788 147 0.1373 0.1741 REMARK 3 4 3.5989 - 3.2699 1.00 2756 145 0.1526 0.1875 REMARK 3 5 3.2699 - 3.0356 1.00 2746 144 0.1685 0.2136 REMARK 3 6 3.0356 - 2.8566 1.00 2741 144 0.1768 0.2389 REMARK 3 7 2.8566 - 2.7136 1.00 2740 145 0.1864 0.2300 REMARK 3 8 2.7136 - 2.5955 1.00 2701 142 0.1736 0.2269 REMARK 3 9 2.5955 - 2.4956 1.00 2743 144 0.1732 0.2295 REMARK 3 10 2.4956 - 2.4095 1.00 2713 143 0.1666 0.2225 REMARK 3 11 2.4095 - 2.3341 1.00 2732 144 0.1629 0.2069 REMARK 3 12 2.3341 - 2.2674 1.00 2706 142 0.1706 0.2176 REMARK 3 13 2.2674 - 2.2077 1.00 2691 142 0.1651 0.2138 REMARK 3 14 2.2077 - 2.1538 1.00 2720 143 0.1691 0.2076 REMARK 3 15 2.1538 - 2.1049 1.00 2694 142 0.1742 0.2279 REMARK 3 16 2.1049 - 2.0601 1.00 2694 142 0.1794 0.2163 REMARK 3 17 2.0601 - 2.0189 0.98 2655 139 0.1909 0.2395 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 5974 REMARK 3 ANGLE : 1.292 8111 REMARK 3 CHIRALITY : 0.076 893 REMARK 3 PLANARITY : 0.007 1057 REMARK 3 DIHEDRAL : 13.562 2154 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 3262 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZZA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000210155. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9805 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92158 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 43.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.47700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 21% PEG 4000, 1.0 M REMARK 280 MAGNESIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.69250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.76500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.47450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.76500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.69250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.47450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 42 REMARK 465 SER A 43 REMARK 465 HIS A 44 REMARK 465 MSE A 45 REMARK 465 GLY A 46 REMARK 465 SER A 47 REMARK 465 GLY A 48 REMARK 465 GLN A 49 REMARK 465 ASN A 85 REMARK 465 SER A 86 REMARK 465 ALA A 87 REMARK 465 ASN A 88 REMARK 465 ALA A 89 REMARK 465 GLN A 90 REMARK 465 THR A 91 REMARK 465 ASP A 92 REMARK 465 LEU A 93 REMARK 465 ARG A 94 REMARK 465 THR A 95 REMARK 465 ARG A 96 REMARK 465 PHE A 97 REMARK 465 VAL A 98 REMARK 465 LYS A 99 REMARK 465 ASP A 100 REMARK 465 VAL A 430 REMARK 465 GLN A 431 REMARK 465 ALA A 432 REMARK 465 ARG A 433 REMARK 465 ASP A 434 REMARK 465 PHE A 435 REMARK 465 ARG A 436 REMARK 465 LYS A 437 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 MSE B 0 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 GLY B 3 REMARK 465 ASN B 40 REMARK 465 SER B 41 REMARK 465 ALA B 42 REMARK 465 ASN B 43 REMARK 465 ALA B 44 REMARK 465 GLN B 45 REMARK 465 THR B 46 REMARK 465 ASP B 47 REMARK 465 LEU B 48 REMARK 465 ARG B 49 REMARK 465 THR B 50 REMARK 465 ARG B 51 REMARK 465 LYS B 384 REMARK 465 VAL B 385 REMARK 465 GLN B 386 REMARK 465 ALA B 387 REMARK 465 ARG B 388 REMARK 465 ASP B 389 REMARK 465 PHE B 390 REMARK 465 ARG B 391 REMARK 465 LYS B 392 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE21 GLN A 295 O HOH A 1008 1.44 REMARK 500 OE1 GLU B 213 HZ2 LYS B 216 1.57 REMARK 500 HG SER B 272 O HOH B 504 1.57 REMARK 500 HZ1 LYS B 133 O HOH B 508 1.58 REMARK 500 HZ2 LYS B 222 O HOH B 501 1.59 REMARK 500 O HOH B 846 O HOH B 884 1.83 REMARK 500 O HOH B 810 O HOH B 922 1.91 REMARK 500 NZ LYS B 222 O HOH B 501 1.91 REMARK 500 O HOH B 628 O HOH B 787 1.92 REMARK 500 O HOH A 1247 O HOH A 1294 1.92 REMARK 500 O HOH B 775 O HOH B 893 1.94 REMARK 500 OE2 GLU B 213 O HOH B 502 1.97 REMARK 500 O HOH A 1021 O HOH A 1163 1.99 REMARK 500 OE2 GLU A 266 O HOH A 1001 2.00 REMARK 500 O HOH B 746 O HOH B 798 2.00 REMARK 500 O HOH A 1117 O HOH A 1134 2.02 REMARK 500 N PHE B 52 O HOH B 503 2.03 REMARK 500 O HOH A 1216 O HOH A 1288 2.03 REMARK 500 O HOH B 921 O HOH B 933 2.05 REMARK 500 O HOH A 1294 O HOH A 1357 2.06 REMARK 500 N VAL A 50 O HOH A 1002 2.07 REMARK 500 O HOH B 768 O HOH B 872 2.08 REMARK 500 OG SER B 272 O HOH B 504 2.08 REMARK 500 O HOH B 503 O HOH B 702 2.08 REMARK 500 O HOH A 1405 O HOH A 1410 2.09 REMARK 500 OE2 GLU A 385 O HOH A 1003 2.12 REMARK 500 O HOH B 573 O HOH B 702 2.12 REMARK 500 O HOH B 609 O HOH B 892 2.13 REMARK 500 O HOH A 1376 O HOH A 1398 2.13 REMARK 500 OD1 ASN B 311 O HOH B 505 2.14 REMARK 500 O HOH B 756 O HOH B 799 2.14 REMARK 500 O HOH A 1314 O HOH A 1358 2.15 REMARK 500 O HOH B 571 O HOH B 909 2.15 REMARK 500 O HOH B 571 O HOH B 812 2.16 REMARK 500 O GLY B 196 O HOH B 506 2.16 REMARK 500 OE1 GLU A 385 O HOH A 1004 2.17 REMARK 500 O HOH A 1359 O HOH B 906 2.18 REMARK 500 OD1 ASP B 270 O HOH B 504 2.19 REMARK 500 O HOH A 1411 O HOH A 1412 2.19 REMARK 500 O HOH B 805 O HOH B 854 2.19 REMARK 500 OE2 GLU A 426 O HOH A 1005 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1368 O HOH B 719 3655 2.06 REMARK 500 O HOH A 1186 O HOH B 504 3555 2.07 REMARK 500 O HOH A 1027 O HOH B 504 3555 2.11 REMARK 500 OD1 ASP A 53 O HOH B 504 3555 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 211 49.82 -141.97 REMARK 500 THR B 166 52.17 -144.83 REMARK 500 ASP B 219 34.69 -94.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 939 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH B 940 DISTANCE = 6.94 ANGSTROMS DBREF 4ZZA A 42 437 UNP C6A9Y6 C6A9Y6_BIFLB 42 437 DBREF 4ZZA B -3 392 UNP C6A9Y6 C6A9Y6_BIFLB 42 437 SEQADV 4ZZA SER A 43 UNP C6A9Y6 ASN 43 CONFLICT SEQADV 4ZZA HIS A 44 UNP C6A9Y6 SER 44 CONFLICT SEQADV 4ZZA MSE A 45 UNP C6A9Y6 ALA 45 CONFLICT SEQADV 4ZZA SER B -2 UNP C6A9Y6 ASN 43 CONFLICT SEQADV 4ZZA HIS B -1 UNP C6A9Y6 SER 44 CONFLICT SEQADV 4ZZA MSE B 0 UNP C6A9Y6 ALA 45 CONFLICT SEQRES 1 A 396 GLY SER HIS MSE GLY SER GLY GLN VAL THR LEU ASP PHE SEQRES 2 A 396 PHE GLN PHE LYS ALA GLU ALA ALA ASP TRP PHE LYS GLN SEQRES 3 A 396 ALA ALA GLN GLU PHE GLU LYS GLU ASN PRO ASP ILE ARG SEQRES 4 A 396 ILE ASN ILE ASN ASN SER ALA ASN ALA GLN THR ASP LEU SEQRES 5 A 396 ARG THR ARG PHE VAL LYS ASP ARG VAL PRO ASP VAL ILE SEQRES 6 A 396 THR PHE ASN GLY ASP TYR SER PHE GLY THR PHE ALA ALA SEQRES 7 A 396 SER GLY VAL PHE HIS ASP PHE THR ASP ASP PRO LEU VAL SEQRES 8 A 396 SER GLU LEU ASN GLU GLY MSE VAL ASN ILE ALA LYS ASN SEQRES 9 A 396 LEU VAL GLN THR SER ASP PRO ALA LYS LYS ARG LEU TYR SEQRES 10 A 396 GLY LEU PRO PHE ALA GLY ASN ALA SER GLY TYR ILE TYR SEQRES 11 A 396 ASN LYS ASP LEU PHE ARG LYS VAL GLY LEU ASP PRO ASP SEQRES 12 A 396 ASN PRO PRO GLN THR TRP ASP GLU PHE ILE ALA MSE LEU SEQRES 13 A 396 LYS LYS PHE ARG ASP ALA GLY ILE ASN PRO VAL GLN ALA SEQRES 14 A 396 THR LEU ALA ASP ALA TRP THR THR GLN ALA PRO LEU ALA SEQRES 15 A 396 SER LEU ALA GLY THR LEU VAL PRO GLU SER GLU TYR ALA SEQRES 16 A 396 ALA LEU LYS SER GLY ASP THR THR PHE LYS GLN ILE TRP SEQRES 17 A 396 THR GLU PRO ILE GLU LYS GLU ILE GLU LEU PHE LYS TYR SEQRES 18 A 396 ALA ASP SER GLU LYS GLY VAL THR TYR GLN GLN GLY THR SEQRES 19 A 396 GLN ASN PHE ALA LYS GLY THR ALA ALA ILE ILE PRO LEU SEQRES 20 A 396 GLY THR TYR ALA ILE PRO GLN ILE THR MSE VAL ASN LYS SEQRES 21 A 396 ASP ILE ASP LEU GLY PHE ALA GLN MSE PRO ALA THR ASN SEQRES 22 A 396 ASP ALA SER LYS GLN ILE LEU THR ALA GLY ASP ASP VAL SEQRES 23 A 396 ILE LEU THR MSE GLY ALA ASN SER ARG HIS LYS GLU GLN SEQRES 24 A 396 SER MSE ARG PHE ILE ARG PHE LEU MSE SER LYS LYS GLN SEQRES 25 A 396 LEU GLU ASN TYR ALA ASP ALA GLN SER ALA ILE THR PRO SEQRES 26 A 396 LEU LYS GLU THR TYR PHE GLY ASN LYS ALA LEU GLU PRO SEQRES 27 A 396 VAL ARG PRO PHE PHE GLU SER ASN ARG VAL ALA ASP PHE SEQRES 28 A 396 CYS ASP HIS TYR ILE PRO SER SER ILE ASN ILE GLY GLY SEQRES 29 A 396 TYR LEU GLN SER ALA ILE MSE SER GLY ASN VAL ASN GLN SEQRES 30 A 396 PHE ILE ASP SER MSE GLN ASN GLU TRP ASN LYS VAL GLN SEQRES 31 A 396 ALA ARG ASP PHE ARG LYS SEQRES 1 B 396 GLY SER HIS MSE GLY SER GLY GLN VAL THR LEU ASP PHE SEQRES 2 B 396 PHE GLN PHE LYS ALA GLU ALA ALA ASP TRP PHE LYS GLN SEQRES 3 B 396 ALA ALA GLN GLU PHE GLU LYS GLU ASN PRO ASP ILE ARG SEQRES 4 B 396 ILE ASN ILE ASN ASN SER ALA ASN ALA GLN THR ASP LEU SEQRES 5 B 396 ARG THR ARG PHE VAL LYS ASP ARG VAL PRO ASP VAL ILE SEQRES 6 B 396 THR PHE ASN GLY ASP TYR SER PHE GLY THR PHE ALA ALA SEQRES 7 B 396 SER GLY VAL PHE HIS ASP PHE THR ASP ASP PRO LEU VAL SEQRES 8 B 396 SER GLU LEU ASN GLU GLY MSE VAL ASN ILE ALA LYS ASN SEQRES 9 B 396 LEU VAL GLN THR SER ASP PRO ALA LYS LYS ARG LEU TYR SEQRES 10 B 396 GLY LEU PRO PHE ALA GLY ASN ALA SER GLY TYR ILE TYR SEQRES 11 B 396 ASN LYS ASP LEU PHE ARG LYS VAL GLY LEU ASP PRO ASP SEQRES 12 B 396 ASN PRO PRO GLN THR TRP ASP GLU PHE ILE ALA MSE LEU SEQRES 13 B 396 LYS LYS PHE ARG ASP ALA GLY ILE ASN PRO VAL GLN ALA SEQRES 14 B 396 THR LEU ALA ASP ALA TRP THR THR GLN ALA PRO LEU ALA SEQRES 15 B 396 SER LEU ALA GLY THR LEU VAL PRO GLU SER GLU TYR ALA SEQRES 16 B 396 ALA LEU LYS SER GLY ASP THR THR PHE LYS GLN ILE TRP SEQRES 17 B 396 THR GLU PRO ILE GLU LYS GLU ILE GLU LEU PHE LYS TYR SEQRES 18 B 396 ALA ASP SER GLU LYS GLY VAL THR TYR GLN GLN GLY THR SEQRES 19 B 396 GLN ASN PHE ALA LYS GLY THR ALA ALA ILE ILE PRO LEU SEQRES 20 B 396 GLY THR TYR ALA ILE PRO GLN ILE THR MSE VAL ASN LYS SEQRES 21 B 396 ASP ILE ASP LEU GLY PHE ALA GLN MSE PRO ALA THR ASN SEQRES 22 B 396 ASP ALA SER LYS GLN ILE LEU THR ALA GLY ASP ASP VAL SEQRES 23 B 396 ILE LEU THR MSE GLY ALA ASN SER ARG HIS LYS GLU GLN SEQRES 24 B 396 SER MSE ARG PHE ILE ARG PHE LEU MSE SER LYS LYS GLN SEQRES 25 B 396 LEU GLU ASN TYR ALA ASP ALA GLN SER ALA ILE THR PRO SEQRES 26 B 396 LEU LYS GLU THR TYR PHE GLY ASN LYS ALA LEU GLU PRO SEQRES 27 B 396 VAL ARG PRO PHE PHE GLU SER ASN ARG VAL ALA ASP PHE SEQRES 28 B 396 CYS ASP HIS TYR ILE PRO SER SER ILE ASN ILE GLY GLY SEQRES 29 B 396 TYR LEU GLN SER ALA ILE MSE SER GLY ASN VAL ASN GLN SEQRES 30 B 396 PHE ILE ASP SER MSE GLN ASN GLU TRP ASN LYS VAL GLN SEQRES 31 B 396 ALA ARG ASP PHE ARG LYS MODRES 4ZZA MSE A 139 MET MODIFIED RESIDUE MODRES 4ZZA MSE A 196 MET MODIFIED RESIDUE MODRES 4ZZA MSE A 298 MET MODIFIED RESIDUE MODRES 4ZZA MSE A 310 MET MODIFIED RESIDUE MODRES 4ZZA MSE A 331 MET MODIFIED RESIDUE MODRES 4ZZA MSE A 342 MET MODIFIED RESIDUE MODRES 4ZZA MSE A 349 MET MODIFIED RESIDUE MODRES 4ZZA MSE A 412 MET MODIFIED RESIDUE MODRES 4ZZA MSE A 423 MET MODIFIED RESIDUE MODRES 4ZZA MSE B 94 MET MODIFIED RESIDUE MODRES 4ZZA MSE B 151 MET MODIFIED RESIDUE MODRES 4ZZA MSE B 253 MET MODIFIED RESIDUE MODRES 4ZZA MSE B 265 MET MODIFIED RESIDUE MODRES 4ZZA MSE B 286 MET MODIFIED RESIDUE MODRES 4ZZA MSE B 297 MET MODIFIED RESIDUE MODRES 4ZZA MSE B 304 MET MODIFIED RESIDUE MODRES 4ZZA MSE B 367 MET MODIFIED RESIDUE MODRES 4ZZA MSE B 378 MET MODIFIED RESIDUE HET MSE A 139 12 HET MSE A 196 12 HET MSE A 298 12 HET MSE A 310 12 HET MSE A 331 12 HET MSE A 342 12 HET MSE A 349 12 HET MSE A 412 12 HET MSE A 423 12 HET MSE B 94 12 HET MSE B 151 12 HET MSE B 253 12 HET MSE B 265 12 HET MSE B 286 12 HET MSE B 297 12 HET MSE B 304 12 HET MSE B 367 12 HET MSE B 378 12 HET FRU C 1 23 HET GLC C 2 21 HET GLA C 3 22 HET FRU D 1 22 HET GLC D 2 21 HET GLA D 3 22 HETNAM MSE SELENOMETHIONINE HETNAM FRU BETA-D-FRUCTOFURANOSE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM GLA ALPHA-D-GALACTOPYRANOSE FORMUL 1 MSE 18(C5 H11 N O2 SE) FORMUL 3 FRU 2(C6 H12 O6) FORMUL 3 GLC 2(C6 H12 O6) FORMUL 3 GLA 2(C6 H12 O6) FORMUL 5 HOH *853(H2 O) HELIX 1 AA1 LYS A 58 GLU A 60 5 3 HELIX 2 AA2 ALA A 61 ASN A 76 1 16 HELIX 3 AA3 ASP A 111 GLY A 121 1 11 HELIX 4 AA4 LEU A 131 LEU A 135 5 5 HELIX 5 AA5 ASN A 136 LEU A 146 1 11 HELIX 6 AA6 ASP A 151 LYS A 155 5 5 HELIX 7 AA7 LYS A 173 VAL A 179 1 7 HELIX 8 AA8 THR A 189 ALA A 203 1 15 HELIX 9 AA9 ASP A 214 THR A 217 5 4 HELIX 10 AB1 THR A 218 VAL A 230 1 13 HELIX 11 AB2 GLU A 232 SER A 240 1 9 HELIX 12 AB3 THR A 244 LYS A 261 1 18 HELIX 13 AB4 THR A 270 LYS A 280 1 11 HELIX 14 AB5 GLY A 289 TYR A 291 5 3 HELIX 15 AB6 ALA A 292 MSE A 298 1 7 HELIX 16 AB7 ASP A 315 GLN A 319 5 5 HELIX 17 AB8 HIS A 337 MSE A 349 1 13 HELIX 18 AB9 SER A 350 SER A 362 1 13 HELIX 19 AC1 ASN A 374 PRO A 379 5 6 HELIX 20 AC2 VAL A 380 SER A 386 1 7 HELIX 21 AC3 PHE A 392 ILE A 397 5 6 HELIX 22 AC4 ASN A 402 GLY A 414 1 13 HELIX 23 AC5 ASN A 415 LYS A 429 1 15 HELIX 24 AC6 LYS B 13 GLU B 15 5 3 HELIX 25 AC7 ALA B 16 ASN B 31 1 16 HELIX 26 AC8 VAL B 53 VAL B 57 5 5 HELIX 27 AC9 ASP B 66 SER B 75 1 10 HELIX 28 AD1 ASP B 84 LEU B 90 5 7 HELIX 29 AD2 ASN B 91 VAL B 102 1 12 HELIX 30 AD3 ASP B 106 LYS B 110 5 5 HELIX 31 AD4 LYS B 128 VAL B 134 1 7 HELIX 32 AD5 THR B 144 ALA B 158 1 15 HELIX 33 AD6 ASP B 169 THR B 172 5 4 HELIX 34 AD7 THR B 173 VAL B 185 1 13 HELIX 35 AD8 GLU B 187 SER B 195 1 9 HELIX 36 AD9 THR B 199 PHE B 215 1 17 HELIX 37 AE1 LYS B 216 ALA B 218 5 3 HELIX 38 AE2 THR B 225 LYS B 235 1 11 HELIX 39 AE3 GLY B 244 TYR B 246 5 3 HELIX 40 AE4 ALA B 247 MSE B 253 1 7 HELIX 41 AE5 ASP B 270 GLN B 274 5 5 HELIX 42 AE6 HIS B 292 MSE B 304 1 13 HELIX 43 AE7 SER B 305 SER B 317 1 13 HELIX 44 AE8 ASN B 329 PRO B 334 5 6 HELIX 45 AE9 VAL B 335 SER B 341 1 7 HELIX 46 AF1 PHE B 347 ILE B 352 5 6 HELIX 47 AF2 PRO B 353 ILE B 356 5 4 HELIX 48 AF3 ASN B 357 GLY B 369 1 13 HELIX 49 AF4 ASN B 370 ASN B 383 1 14 SHEET 1 AA1 5 ARG A 80 ASN A 84 0 SHEET 2 AA1 5 THR A 51 GLN A 56 1 N LEU A 52 O ARG A 80 SHEET 3 AA1 5 VAL A 105 PHE A 108 1 O VAL A 105 N PHE A 55 SHEET 4 AA1 5 LEU A 321 MSE A 331 -1 O THR A 330 N ILE A 106 SHEET 5 AA1 5 LEU A 160 ALA A 166 -1 N LEU A 160 O LEU A 329 SHEET 1 AA2 5 ARG A 80 ASN A 84 0 SHEET 2 AA2 5 THR A 51 GLN A 56 1 N LEU A 52 O ARG A 80 SHEET 3 AA2 5 VAL A 105 PHE A 108 1 O VAL A 105 N PHE A 55 SHEET 4 AA2 5 LEU A 321 MSE A 331 -1 O THR A 330 N ILE A 106 SHEET 5 AA2 5 VAL A 389 ALA A 390 1 O ALA A 390 N ALA A 323 SHEET 1 AA3 3 ILE A 285 ILE A 286 0 SHEET 2 AA3 3 TYR A 169 ASN A 172 -1 N ILE A 170 O ILE A 286 SHEET 3 AA3 3 LEU A 305 ALA A 308 -1 O ALA A 308 N TYR A 169 SHEET 1 AA4 5 ILE B 34 ASN B 39 0 SHEET 2 AA4 5 VAL B 5 GLN B 11 1 N LEU B 7 O ARG B 35 SHEET 3 AA4 5 VAL B 60 PHE B 63 1 O THR B 62 N PHE B 10 SHEET 4 AA4 5 ASP B 280 MSE B 286 -1 O ILE B 283 N PHE B 63 SHEET 5 AA4 5 LEU B 115 GLY B 119 -1 N LEU B 115 O LEU B 284 SHEET 1 AA5 3 ILE B 240 ILE B 241 0 SHEET 2 AA5 3 TYR B 124 ASN B 127 -1 N ILE B 125 O ILE B 241 SHEET 3 AA5 3 LEU B 260 ALA B 263 -1 O ALA B 263 N TYR B 124 SHEET 1 AA6 2 LEU B 276 THR B 277 0 SHEET 2 AA6 2 VAL B 344 ALA B 345 1 O ALA B 345 N LEU B 276 LINK C GLY A 138 N MSE A 139 1555 1555 1.32 LINK C MSE A 139 N VAL A 140 1555 1555 1.33 LINK C ALA A 195 N MSE A 196 1555 1555 1.33 LINK C MSE A 196 N LEU A 197 1555 1555 1.33 LINK C THR A 297 N MSE A 298 1555 1555 1.32 LINK C MSE A 298 N VAL A 299 1555 1555 1.33 LINK C GLN A 309 N MSE A 310 1555 1555 1.32 LINK C MSE A 310 N PRO A 311 1555 1555 1.33 LINK C THR A 330 N MSE A 331 1555 1555 1.33 LINK C MSE A 331 N GLY A 332 1555 1555 1.33 LINK C SER A 341 N MSE A 342 1555 1555 1.33 LINK C MSE A 342 N ARG A 343 1555 1555 1.34 LINK C LEU A 348 N MSE A 349 1555 1555 1.34 LINK C MSE A 349 N SER A 350 1555 1555 1.33 LINK C ILE A 411 N MSE A 412 1555 1555 1.33 LINK C MSE A 412 N SER A 413 1555 1555 1.33 LINK C SER A 422 N MSE A 423 1555 1555 1.34 LINK C MSE A 423 N GLN A 424 1555 1555 1.32 LINK C GLY B 93 N MSE B 94 1555 1555 1.32 LINK C MSE B 94 N VAL B 95 1555 1555 1.33 LINK C ALA B 150 N MSE B 151 1555 1555 1.33 LINK C MSE B 151 N LEU B 152 1555 1555 1.33 LINK C THR B 252 N MSE B 253 1555 1555 1.33 LINK C MSE B 253 N VAL B 254 1555 1555 1.34 LINK C GLN B 264 N MSE B 265 1555 1555 1.32 LINK C MSE B 265 N PRO B 266 1555 1555 1.35 LINK C THR B 285 N MSE B 286 1555 1555 1.33 LINK C MSE B 286 N GLY B 287 1555 1555 1.34 LINK C SER B 296 N MSE B 297 1555 1555 1.33 LINK C MSE B 297 N ARG B 298 1555 1555 1.34 LINK C LEU B 303 N MSE B 304 1555 1555 1.33 LINK C MSE B 304 N SER B 305 1555 1555 1.32 LINK C ILE B 366 N MSE B 367 1555 1555 1.34 LINK C MSE B 367 N SER B 368 1555 1555 1.32 LINK C SER B 377 N MSE B 378 1555 1555 1.34 LINK C MSE B 378 N GLN B 379 1555 1555 1.34 LINK O2 FRU C 1 C1 GLC C 2 1555 1555 1.40 LINK O6 GLC C 2 C1 GLA C 3 1555 1555 1.39 LINK O2 FRU D 1 C1 GLC D 2 1555 1555 1.40 LINK O6 GLC D 2 C1 GLA D 3 1555 1555 1.38 CRYST1 55.385 90.949 145.530 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018055 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010995 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006871 0.00000