data_4A2N # _entry.id 4A2N # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4A2N PDBE EBI-49809 WWPDB D_1290049809 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4A2N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2011-09-27 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yang, J.' 1 'Kulkarni, K.' 2 'Manolaridis, I.' 3 'Zhang, Z.' 4 'Dodd, R.B.' 5 'Mas-Droux, C.' 6 'Barford, D.' 7 # _citation.id primary _citation.title 'Mechanism of Isoprenylcysteine Carboxyl Methylation from the Crystal Structure of the Integral Membrane Methyltransferase Icmt.' _citation.journal_abbrev Mol.Cell _citation.journal_volume 44 _citation.page_first 997 _citation.page_last ? _citation.year 2011 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22195972 _citation.pdbx_database_id_DOI 10.1016/J.MOLCEL.2011.10.020 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Yang, J.' 1 primary 'Kulkarni, K.' 2 primary 'Manolaridis, I.' 3 primary 'Zhang, Z.' 4 primary 'Dodd, R.B.' 5 primary 'Mas-Droux, C.' 6 primary 'Barford, D.' 7 # _cell.entry_id 4A2N _cell.length_a 114.920 _cell.length_b 114.920 _cell.length_c 169.291 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A2N _symmetry.space_group_name_H-M 'P 62 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ISOPRENYLCYSTEINE CARBOXYL METHYLTRANSFERASE' 22839.248 1 ? ? ? ? 2 non-polymer syn S-ADENOSYL-L-HOMOCYSTEINE 384.411 1 ? ? ? ? 3 non-polymer syn 'PALMITIC ACID' 256.424 1 ? ? ? ? 4 non-polymer syn CARDIOLIPIN 1464.043 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MNENLWKICFIVMFIIWVFVRKVYGTRAMKNKSKKKVRPNFEKSLVFLNFIGMVFLPLTAVFSSYLDSFNINLPDSIRLF ALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSNWVVLIFGIVAWAILY FIRVPKEEELLIEEFGDEYIEYMGKTGRLFPKVV ; _entity_poly.pdbx_seq_one_letter_code_can ;MNENLWKICFIVMFIIWVFVRKVYGTRAMKNKSKKKVRPNFEKSLVFLNFIGMVFLPLTAVFSSYLDSFNINLPDSIRLF ALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSNWVVLIFGIVAWAILY FIRVPKEEELLIEEFGDEYIEYMGKTGRLFPKVV ; _entity_poly.pdbx_strand_id B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ASN n 1 3 GLU n 1 4 ASN n 1 5 LEU n 1 6 TRP n 1 7 LYS n 1 8 ILE n 1 9 CYS n 1 10 PHE n 1 11 ILE n 1 12 VAL n 1 13 MET n 1 14 PHE n 1 15 ILE n 1 16 ILE n 1 17 TRP n 1 18 VAL n 1 19 PHE n 1 20 VAL n 1 21 ARG n 1 22 LYS n 1 23 VAL n 1 24 TYR n 1 25 GLY n 1 26 THR n 1 27 ARG n 1 28 ALA n 1 29 MET n 1 30 LYS n 1 31 ASN n 1 32 LYS n 1 33 SER n 1 34 LYS n 1 35 LYS n 1 36 LYS n 1 37 VAL n 1 38 ARG n 1 39 PRO n 1 40 ASN n 1 41 PHE n 1 42 GLU n 1 43 LYS n 1 44 SER n 1 45 LEU n 1 46 VAL n 1 47 PHE n 1 48 LEU n 1 49 ASN n 1 50 PHE n 1 51 ILE n 1 52 GLY n 1 53 MET n 1 54 VAL n 1 55 PHE n 1 56 LEU n 1 57 PRO n 1 58 LEU n 1 59 THR n 1 60 ALA n 1 61 VAL n 1 62 PHE n 1 63 SER n 1 64 SER n 1 65 TYR n 1 66 LEU n 1 67 ASP n 1 68 SER n 1 69 PHE n 1 70 ASN n 1 71 ILE n 1 72 ASN n 1 73 LEU n 1 74 PRO n 1 75 ASP n 1 76 SER n 1 77 ILE n 1 78 ARG n 1 79 LEU n 1 80 PHE n 1 81 ALA n 1 82 LEU n 1 83 ILE n 1 84 VAL n 1 85 THR n 1 86 PHE n 1 87 LEU n 1 88 ASN n 1 89 ILE n 1 90 GLY n 1 91 LEU n 1 92 PHE n 1 93 THR n 1 94 LYS n 1 95 ILE n 1 96 HIS n 1 97 LYS n 1 98 ASP n 1 99 LEU n 1 100 GLY n 1 101 ASN n 1 102 ASN n 1 103 TRP n 1 104 SER n 1 105 ALA n 1 106 ILE n 1 107 LEU n 1 108 GLU n 1 109 ILE n 1 110 LYS n 1 111 ASP n 1 112 GLY n 1 113 HIS n 1 114 LYS n 1 115 LEU n 1 116 VAL n 1 117 LYS n 1 118 GLU n 1 119 GLY n 1 120 ILE n 1 121 TYR n 1 122 LYS n 1 123 ASN n 1 124 ILE n 1 125 ARG n 1 126 HIS n 1 127 PRO n 1 128 MET n 1 129 TYR n 1 130 ALA n 1 131 HIS n 1 132 LEU n 1 133 TRP n 1 134 LEU n 1 135 TRP n 1 136 VAL n 1 137 ILE n 1 138 THR n 1 139 GLN n 1 140 GLY n 1 141 ILE n 1 142 ILE n 1 143 LEU n 1 144 SER n 1 145 ASN n 1 146 TRP n 1 147 VAL n 1 148 VAL n 1 149 LEU n 1 150 ILE n 1 151 PHE n 1 152 GLY n 1 153 ILE n 1 154 VAL n 1 155 ALA n 1 156 TRP n 1 157 ALA n 1 158 ILE n 1 159 LEU n 1 160 TYR n 1 161 PHE n 1 162 ILE n 1 163 ARG n 1 164 VAL n 1 165 PRO n 1 166 LYS n 1 167 GLU n 1 168 GLU n 1 169 GLU n 1 170 LEU n 1 171 LEU n 1 172 ILE n 1 173 GLU n 1 174 GLU n 1 175 PHE n 1 176 GLY n 1 177 ASP n 1 178 GLU n 1 179 TYR n 1 180 ILE n 1 181 GLU n 1 182 TYR n 1 183 MET n 1 184 GLY n 1 185 LYS n 1 186 THR n 1 187 GLY n 1 188 ARG n 1 189 LEU n 1 190 PHE n 1 191 PRO n 1 192 LYS n 1 193 VAL n 1 194 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain DSMZ-GMBH _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'METHANOSARCINA ACETIVORANS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2214 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant C41 _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PTRIEX _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name POPIN-GFP _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8TMG0_METAC _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q8TMG0 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4A2N _struct_ref_seq.pdbx_strand_id B _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 194 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8TMG0 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 194 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 194 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CDL non-polymer . CARDIOLIPIN ;DIPHOSPHATIDYL GLYCEROL; BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL ; 'C81 H156 O17 P2 -2' 1464.043 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PLM non-polymer . 'PALMITIC ACID' ? 'C16 H32 O2' 256.424 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SAH 'L-peptide linking' n S-ADENOSYL-L-HOMOCYSTEINE ? 'C14 H20 N6 O5 S' 384.411 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4A2N _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 7.15 _exptl_crystal.density_percent_sol 80.2 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;0.1 M AMMONIUM SULPHATE, 0.3 M SODIUM FORMATE, 0.1 M SODIUM CACODYLATE PH 6.5, 3% (V/V) POLYGLUTAMIC ACID AND 20%-26% (W/V) PEG 550 MME ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2010-10-04 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.93900 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I03 _diffrn_source.pdbx_wavelength 0.93900 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4A2N _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 47.54 _reflns.d_resolution_high 3.40 _reflns.number_obs 9625 _reflns.number_all ? _reflns.percent_possible_obs 98.3 _reflns.pdbx_Rmerge_I_obs 0.13 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 9.30 _reflns.B_iso_Wilson_estimate 97.06 _reflns.pdbx_redundancy 6.7 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 3.40 _reflns_shell.d_res_low 3.58 _reflns_shell.percent_possible_all 99.0 _reflns_shell.Rmerge_I_obs 0.86 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.10 _reflns_shell.pdbx_redundancy 7.0 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4A2N _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 9625 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.02 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 38.947 _refine.ls_d_res_high 3.400 _refine.ls_percent_reflns_obs 98.20 _refine.ls_R_factor_obs 0.2400 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2384 _refine.ls_R_factor_R_free 0.2749 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 462 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 108.81 _refine.aniso_B[1][1] -13.2349 _refine.aniso_B[2][2] -13.2349 _refine.aniso_B[3][3] 26.4697 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.278 _refine.solvent_model_param_bsol 54.518 _refine.pdbx_solvent_vdw_probe_radii 0.80 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.49 _refine.pdbx_ls_cross_valid_method ? _refine.details 'SIDE CHAIN ATOMS FOR WHICH ELECTRON DENSITY IS NOT OBSERVED ARE NOT INCLUDED IN THE REFINEMENT.' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values MLHL _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.50 _refine.pdbx_overall_phase_error 25.86 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1554 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 58 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1612 _refine_hist.d_res_high 3.400 _refine_hist.d_res_low 38.947 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.010 ? ? 1658 'X-RAY DIFFRACTION' ? f_angle_d 1.341 ? ? 2255 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 19.687 ? ? 583 'X-RAY DIFFRACTION' ? f_chiral_restr 0.087 ? ? 254 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 267 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 3.4000 3.6129 2680 0.3517 99.00 0.3503 . . 151 . . 'X-RAY DIFFRACTION' . 3.6129 3.8916 2683 0.2847 99.00 0.3343 . . 147 . . 'X-RAY DIFFRACTION' . 3.8916 4.2828 2712 0.2394 99.00 0.2496 . . 121 . . 'X-RAY DIFFRACTION' . 4.2828 4.9015 2675 0.1952 99.00 0.2652 . . 143 . . 'X-RAY DIFFRACTION' . 4.9015 6.1714 2692 0.2292 98.00 0.2665 . . 125 . . 'X-RAY DIFFRACTION' . 6.1714 38.9499 2636 0.2245 96.00 0.2477 . . 136 . . # _struct.entry_id 4A2N _struct.title 'Crystal Structure of Ma-ICMT' _struct.pdbx_descriptor 'ISOPRENYLCYSTEINE CARBOXYL METHYLTRANSFERASE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4A2N _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'TRANSFERASE, MEMBRANE PROTEIN, RAS AND RHO GTPASES SIGNALLING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 2 ? MET A 29 ? ASN B 2 MET B 29 1 ? 28 HELX_P HELX_P2 2 ARG A 38 ? VAL A 54 ? ARG B 38 VAL B 54 1 ? 17 HELX_P HELX_P3 3 VAL A 54 ? PHE A 62 ? VAL B 54 PHE B 62 1 ? 9 HELX_P HELX_P4 4 SER A 64 ? ASN A 70 ? SER B 64 ASN B 70 5 ? 7 HELX_P HELX_P5 5 PRO A 74 ? GLY A 100 ? PRO B 74 GLY B 100 1 ? 27 HELX_P HELX_P6 6 ASN A 101 ? TRP A 103 ? ASN B 101 TRP B 103 5 ? 3 HELX_P HELX_P7 7 HIS A 126 ? SER A 144 ? HIS B 126 SER B 144 1 ? 19 HELX_P HELX_P8 8 ASN A 145 ? THR A 186 ? ASN B 145 THR B 186 1 ? 42 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id BA _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id BA _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id BA 1 SER A 33 ? LYS A 35 ? SER B 33 LYS B 35 BA 2 ILE A 109 ? LYS A 110 ? ILE B 109 LYS B 110 # _pdbx_struct_sheet_hbond.sheet_id BA _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id LYS _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 34 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id LYS _pdbx_struct_sheet_hbond.range_1_auth_asym_id B _pdbx_struct_sheet_hbond.range_1_auth_seq_id 34 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id ILE _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 109 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id ILE _pdbx_struct_sheet_hbond.range_2_auth_asym_id B _pdbx_struct_sheet_hbond.range_2_auth_seq_id 109 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 15 'BINDING SITE FOR RESIDUE SAH B 1193' AC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE PLM B 1194' AC3 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE CDL B 1195' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 15 TRP A 103 ? TRP B 103 . ? 1_555 ? 2 AC1 15 SER A 104 ? SER B 104 . ? 1_555 ? 3 AC1 15 LEU A 107 ? LEU B 107 . ? 1_555 ? 4 AC1 15 GLU A 108 ? GLU B 108 . ? 1_555 ? 5 AC1 15 ILE A 109 ? ILE B 109 . ? 1_555 ? 6 AC1 15 HIS A 113 ? HIS B 113 . ? 1_555 ? 7 AC1 15 LEU A 115 ? LEU B 115 . ? 1_555 ? 8 AC1 15 VAL A 116 ? VAL B 116 . ? 1_555 ? 9 AC1 15 TYR A 121 ? TYR B 121 . ? 1_555 ? 10 AC1 15 HIS A 126 ? HIS B 126 . ? 1_555 ? 11 AC1 15 PRO A 127 ? PRO B 127 . ? 1_555 ? 12 AC1 15 MET A 128 ? MET B 128 . ? 1_555 ? 13 AC1 15 TYR A 129 ? TYR B 129 . ? 1_555 ? 14 AC1 15 GLU A 167 ? GLU B 167 . ? 1_555 ? 15 AC1 15 LEU A 171 ? LEU B 171 . ? 1_555 ? 16 AC2 2 ARG A 21 ? ARG B 21 . ? 1_555 ? 17 AC2 2 MET A 53 ? MET B 53 . ? 1_555 ? 18 AC3 8 TYR A 24 ? TYR B 24 . ? 4_665 ? 19 AC3 8 PHE A 86 ? PHE B 86 . ? 1_555 ? 20 AC3 8 GLY A 90 ? GLY B 90 . ? 1_555 ? 21 AC3 8 THR A 93 ? THR B 93 . ? 4_665 ? 22 AC3 8 THR A 93 ? THR B 93 . ? 1_555 ? 23 AC3 8 LYS A 94 ? LYS B 94 . ? 1_555 ? 24 AC3 8 LYS A 97 ? LYS B 97 . ? 1_555 ? 25 AC3 8 LYS A 97 ? LYS B 97 . ? 4_665 ? # _database_PDB_matrix.entry_id 4A2N _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4A2N _atom_sites.fract_transf_matrix[1][1] 0.008702 _atom_sites.fract_transf_matrix[1][2] 0.005024 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010048 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005907 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET B . n A 1 2 ASN 2 2 2 ASN ASN B . n A 1 3 GLU 3 3 3 GLU GLU B . n A 1 4 ASN 4 4 4 ASN ASN B . n A 1 5 LEU 5 5 5 LEU LEU B . n A 1 6 TRP 6 6 6 TRP TRP B . n A 1 7 LYS 7 7 7 LYS LYS B . n A 1 8 ILE 8 8 8 ILE ILE B . n A 1 9 CYS 9 9 9 CYS CYS B . n A 1 10 PHE 10 10 10 PHE PHE B . n A 1 11 ILE 11 11 11 ILE ILE B . n A 1 12 VAL 12 12 12 VAL VAL B . n A 1 13 MET 13 13 13 MET MET B . n A 1 14 PHE 14 14 14 PHE PHE B . n A 1 15 ILE 15 15 15 ILE ILE B . n A 1 16 ILE 16 16 16 ILE ILE B . n A 1 17 TRP 17 17 17 TRP TRP B . n A 1 18 VAL 18 18 18 VAL VAL B . n A 1 19 PHE 19 19 19 PHE PHE B . n A 1 20 VAL 20 20 20 VAL VAL B . n A 1 21 ARG 21 21 21 ARG ARG B . n A 1 22 LYS 22 22 22 LYS LYS B . n A 1 23 VAL 23 23 23 VAL VAL B . n A 1 24 TYR 24 24 24 TYR TYR B . n A 1 25 GLY 25 25 25 GLY GLY B . n A 1 26 THR 26 26 26 THR THR B . n A 1 27 ARG 27 27 27 ARG ARG B . n A 1 28 ALA 28 28 28 ALA ALA B . n A 1 29 MET 29 29 29 MET MET B . n A 1 30 LYS 30 30 30 LYS LYS B . n A 1 31 ASN 31 31 31 ASN ASN B . n A 1 32 LYS 32 32 32 LYS LYS B . n A 1 33 SER 33 33 33 SER SER B . n A 1 34 LYS 34 34 34 LYS LYS B . n A 1 35 LYS 35 35 35 LYS LYS B . n A 1 36 LYS 36 36 36 LYS LYS B . n A 1 37 VAL 37 37 37 VAL VAL B . n A 1 38 ARG 38 38 38 ARG ARG B . n A 1 39 PRO 39 39 39 PRO PRO B . n A 1 40 ASN 40 40 40 ASN ASN B . n A 1 41 PHE 41 41 41 PHE PHE B . n A 1 42 GLU 42 42 42 GLU GLU B . n A 1 43 LYS 43 43 43 LYS LYS B . n A 1 44 SER 44 44 44 SER SER B . n A 1 45 LEU 45 45 45 LEU LEU B . n A 1 46 VAL 46 46 46 VAL VAL B . n A 1 47 PHE 47 47 47 PHE PHE B . n A 1 48 LEU 48 48 48 LEU LEU B . n A 1 49 ASN 49 49 49 ASN ASN B . n A 1 50 PHE 50 50 50 PHE PHE B . n A 1 51 ILE 51 51 51 ILE ILE B . n A 1 52 GLY 52 52 52 GLY GLY B . n A 1 53 MET 53 53 53 MET MET B . n A 1 54 VAL 54 54 54 VAL VAL B . n A 1 55 PHE 55 55 55 PHE PHE B . n A 1 56 LEU 56 56 56 LEU LEU B . n A 1 57 PRO 57 57 57 PRO PRO B . n A 1 58 LEU 58 58 58 LEU LEU B . n A 1 59 THR 59 59 59 THR THR B . n A 1 60 ALA 60 60 60 ALA ALA B . n A 1 61 VAL 61 61 61 VAL VAL B . n A 1 62 PHE 62 62 62 PHE PHE B . n A 1 63 SER 63 63 63 SER SER B . n A 1 64 SER 64 64 64 SER SER B . n A 1 65 TYR 65 65 65 TYR TYR B . n A 1 66 LEU 66 66 66 LEU LEU B . n A 1 67 ASP 67 67 67 ASP ASP B . n A 1 68 SER 68 68 68 SER SER B . n A 1 69 PHE 69 69 69 PHE PHE B . n A 1 70 ASN 70 70 70 ASN ASN B . n A 1 71 ILE 71 71 71 ILE ILE B . n A 1 72 ASN 72 72 72 ASN ASN B . n A 1 73 LEU 73 73 73 LEU LEU B . n A 1 74 PRO 74 74 74 PRO PRO B . n A 1 75 ASP 75 75 75 ASP ASP B . n A 1 76 SER 76 76 76 SER SER B . n A 1 77 ILE 77 77 77 ILE ILE B . n A 1 78 ARG 78 78 78 ARG ARG B . n A 1 79 LEU 79 79 79 LEU LEU B . n A 1 80 PHE 80 80 80 PHE PHE B . n A 1 81 ALA 81 81 81 ALA ALA B . n A 1 82 LEU 82 82 82 LEU LEU B . n A 1 83 ILE 83 83 83 ILE ILE B . n A 1 84 VAL 84 84 84 VAL VAL B . n A 1 85 THR 85 85 85 THR THR B . n A 1 86 PHE 86 86 86 PHE PHE B . n A 1 87 LEU 87 87 87 LEU LEU B . n A 1 88 ASN 88 88 88 ASN ASN B . n A 1 89 ILE 89 89 89 ILE ILE B . n A 1 90 GLY 90 90 90 GLY GLY B . n A 1 91 LEU 91 91 91 LEU LEU B . n A 1 92 PHE 92 92 92 PHE PHE B . n A 1 93 THR 93 93 93 THR THR B . n A 1 94 LYS 94 94 94 LYS LYS B . n A 1 95 ILE 95 95 95 ILE ILE B . n A 1 96 HIS 96 96 96 HIS HIS B . n A 1 97 LYS 97 97 97 LYS LYS B . n A 1 98 ASP 98 98 98 ASP ASP B . n A 1 99 LEU 99 99 99 LEU LEU B . n A 1 100 GLY 100 100 100 GLY GLY B . n A 1 101 ASN 101 101 101 ASN ASN B . n A 1 102 ASN 102 102 102 ASN ASN B . n A 1 103 TRP 103 103 103 TRP TRP B . n A 1 104 SER 104 104 104 SER SER B . n A 1 105 ALA 105 105 105 ALA ALA B . n A 1 106 ILE 106 106 106 ILE ILE B . n A 1 107 LEU 107 107 107 LEU LEU B . n A 1 108 GLU 108 108 108 GLU GLU B . n A 1 109 ILE 109 109 109 ILE ILE B . n A 1 110 LYS 110 110 110 LYS LYS B . n A 1 111 ASP 111 111 111 ASP ASP B . n A 1 112 GLY 112 112 112 GLY GLY B . n A 1 113 HIS 113 113 113 HIS HIS B . n A 1 114 LYS 114 114 114 LYS LYS B . n A 1 115 LEU 115 115 115 LEU LEU B . n A 1 116 VAL 116 116 116 VAL VAL B . n A 1 117 LYS 117 117 117 LYS LYS B . n A 1 118 GLU 118 118 118 GLU GLU B . n A 1 119 GLY 119 119 119 GLY GLY B . n A 1 120 ILE 120 120 120 ILE ILE B . n A 1 121 TYR 121 121 121 TYR TYR B . n A 1 122 LYS 122 122 122 LYS LYS B . n A 1 123 ASN 123 123 123 ASN ASN B . n A 1 124 ILE 124 124 124 ILE ILE B . n A 1 125 ARG 125 125 125 ARG ARG B . n A 1 126 HIS 126 126 126 HIS HIS B . n A 1 127 PRO 127 127 127 PRO PRO B . n A 1 128 MET 128 128 128 MET MET B . n A 1 129 TYR 129 129 129 TYR TYR B . n A 1 130 ALA 130 130 130 ALA ALA B . n A 1 131 HIS 131 131 131 HIS HIS B . n A 1 132 LEU 132 132 132 LEU LEU B . n A 1 133 TRP 133 133 133 TRP TRP B . n A 1 134 LEU 134 134 134 LEU LEU B . n A 1 135 TRP 135 135 135 TRP TRP B . n A 1 136 VAL 136 136 136 VAL VAL B . n A 1 137 ILE 137 137 137 ILE ILE B . n A 1 138 THR 138 138 138 THR THR B . n A 1 139 GLN 139 139 139 GLN GLN B . n A 1 140 GLY 140 140 140 GLY GLY B . n A 1 141 ILE 141 141 141 ILE ILE B . n A 1 142 ILE 142 142 142 ILE ILE B . n A 1 143 LEU 143 143 143 LEU LEU B . n A 1 144 SER 144 144 144 SER SER B . n A 1 145 ASN 145 145 145 ASN ASN B . n A 1 146 TRP 146 146 146 TRP TRP B . n A 1 147 VAL 147 147 147 VAL VAL B . n A 1 148 VAL 148 148 148 VAL VAL B . n A 1 149 LEU 149 149 149 LEU LEU B . n A 1 150 ILE 150 150 150 ILE ILE B . n A 1 151 PHE 151 151 151 PHE PHE B . n A 1 152 GLY 152 152 152 GLY GLY B . n A 1 153 ILE 153 153 153 ILE ILE B . n A 1 154 VAL 154 154 154 VAL VAL B . n A 1 155 ALA 155 155 155 ALA ALA B . n A 1 156 TRP 156 156 156 TRP TRP B . n A 1 157 ALA 157 157 157 ALA ALA B . n A 1 158 ILE 158 158 158 ILE ILE B . n A 1 159 LEU 159 159 159 LEU LEU B . n A 1 160 TYR 160 160 160 TYR TYR B . n A 1 161 PHE 161 161 161 PHE PHE B . n A 1 162 ILE 162 162 162 ILE ILE B . n A 1 163 ARG 163 163 163 ARG ARG B . n A 1 164 VAL 164 164 164 VAL VAL B . n A 1 165 PRO 165 165 165 PRO PRO B . n A 1 166 LYS 166 166 166 LYS LYS B . n A 1 167 GLU 167 167 167 GLU GLU B . n A 1 168 GLU 168 168 168 GLU GLU B . n A 1 169 GLU 169 169 169 GLU GLU B . n A 1 170 LEU 170 170 170 LEU LEU B . n A 1 171 LEU 171 171 171 LEU LEU B . n A 1 172 ILE 172 172 172 ILE ILE B . n A 1 173 GLU 173 173 173 GLU GLU B . n A 1 174 GLU 174 174 174 GLU GLU B . n A 1 175 PHE 175 175 175 PHE PHE B . n A 1 176 GLY 176 176 176 GLY GLY B . n A 1 177 ASP 177 177 177 ASP ASP B . n A 1 178 GLU 178 178 178 GLU GLU B . n A 1 179 TYR 179 179 179 TYR TYR B . n A 1 180 ILE 180 180 180 ILE ILE B . n A 1 181 GLU 181 181 181 GLU GLU B . n A 1 182 TYR 182 182 182 TYR TYR B . n A 1 183 MET 183 183 183 MET MET B . n A 1 184 GLY 184 184 184 GLY GLY B . n A 1 185 LYS 185 185 185 LYS LYS B . n A 1 186 THR 186 186 186 THR THR B . n A 1 187 GLY 187 187 187 GLY GLY B . n A 1 188 ARG 188 188 188 ARG ARG B . n A 1 189 LEU 189 189 189 LEU LEU B . n A 1 190 PHE 190 190 190 PHE PHE B . n A 1 191 PRO 191 191 191 PRO PRO B . n A 1 192 LYS 192 192 192 LYS LYS B . n A 1 193 VAL 193 193 ? ? ? B . n A 1 194 VAL 194 194 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH 1 1193 1193 SAH SAH B . C 3 PLM 1 1194 1194 PLM PLM B . D 4 CDL 1 1195 1195 CDL CDL B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-01-11 2 'Structure model' 1 1 2018-01-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Source and taxonomy' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category entity_src_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id' 2 2 'Structure model' '_entity_src_gen.pdbx_host_org_scientific_name' 3 2 'Structure model' '_entity_src_gen.pdbx_host_org_strain' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 21.4014 44.4165 84.2142 0.5827 1.2472 0.8519 0.0674 0.0151 0.0728 0.4268 0.4029 0.2649 0.4080 -0.1113 -0.0403 -0.1487 1.2458 -1.0515 -0.1288 -0.1411 -0.0993 0.1774 -0.7084 0.0694 'X-RAY DIFFRACTION' 2 ? refined 12.9466 48.6720 95.0824 0.3178 0.9447 0.4810 0.1148 0.0093 -0.0257 0.3138 0.2140 0.7436 -0.2699 0.5077 -0.4212 -0.0845 0.4476 -0.4133 0.1404 -0.0850 -0.5519 -0.0532 -0.2328 0.1477 'X-RAY DIFFRACTION' 3 ? refined 8.1103 49.4990 115.8241 0.8430 1.4567 0.7360 0.1510 -0.0922 0.1963 0.0582 0.1953 0.8259 0.0467 -0.1613 -0.3747 0.0707 0.2199 -0.3562 -0.1834 0.4313 0.7337 0.4025 -0.7846 -0.0916 'X-RAY DIFFRACTION' 4 ? refined 11.4780 56.9625 95.3641 0.1908 0.9475 0.3618 -0.1058 0.0013 0.0793 0.6097 0.2591 0.1566 -0.4047 -0.0625 0.0095 -0.3042 0.1243 -0.0070 0.1286 -0.2281 -0.0687 -0.0575 0.1776 0.0750 'X-RAY DIFFRACTION' 5 ? refined 5.9067 61.8217 114.4620 0.7798 0.8183 0.5946 0.2384 -0.1206 -0.2589 0.2007 0.7035 1.6486 0.1286 -0.4699 0.2983 -0.7291 -0.9226 0.5451 0.7688 -0.1880 -0.2337 0.2972 -1.4023 -0.0406 'X-RAY DIFFRACTION' 6 ? refined 13.8855 67.6874 106.3112 0.8042 0.8348 1.2040 0.0422 0.1165 -0.1585 0.5278 0.2671 0.2425 0.1191 0.2478 -0.0754 -0.3874 -0.8836 0.6659 -0.1600 -0.2633 -0.7323 0.3625 -0.3104 0.0682 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '(CHAIN B AND RESID 1:18)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '(CHAIN B AND RESID 19:107)' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? '(CHAIN B AND RESID 108:113)' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? '(CHAIN B AND RESID 114:166)' 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? '(CHAIN B AND RESID 167:180)' 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? '(CHAIN B AND RESID 181:192)' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOSFLM 'data reduction' . ? 1 SCALA 'data scaling' . ? 2 PHENIX phasing . ? 3 PHASER phasing . ? 4 PHENIX refinement . ? 5 # _pdbx_entry_details.entry_id 4A2N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;C9 ALKYL CHAIN (PLM): THIS IS A PUTATIVE LIGAND CONSISTING OF 8 CARBON ATOMS ARRANGED AS IN (3R, 12R)-3-AMINO-12- METHYLTETRADECANAL. COMPLETE CHEMICAL INFORMATION IS NOT KNOWN ; _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS B 34 ? ? -97.10 -72.99 2 1 ARG B 38 ? ? 37.62 44.06 3 1 VAL B 61 ? ? -98.07 -69.86 4 1 ASN B 123 ? ? 74.73 -10.37 5 1 SER B 144 ? ? 41.80 70.43 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id CA4 _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id B _pdbx_validate_chiral.auth_comp_id CDL _pdbx_validate_chiral.auth_seq_id 1195 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details 'WRONG HAND' _pdbx_validate_chiral.omega . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B MET 1 ? CG ? A MET 1 CG 2 1 Y 1 B MET 1 ? SD ? A MET 1 SD 3 1 Y 1 B MET 1 ? CE ? A MET 1 CE 4 1 Y 1 B LYS 22 ? CG ? A LYS 22 CG 5 1 Y 1 B LYS 22 ? CD ? A LYS 22 CD 6 1 Y 1 B LYS 22 ? CE ? A LYS 22 CE 7 1 Y 1 B LYS 22 ? NZ ? A LYS 22 NZ 8 1 Y 1 B ARG 27 ? CG ? A ARG 27 CG 9 1 Y 1 B ARG 27 ? CD ? A ARG 27 CD 10 1 Y 1 B ARG 27 ? NE ? A ARG 27 NE 11 1 Y 1 B ARG 27 ? CZ ? A ARG 27 CZ 12 1 Y 1 B ARG 27 ? NH1 ? A ARG 27 NH1 13 1 Y 1 B ARG 27 ? NH2 ? A ARG 27 NH2 14 1 Y 1 B LYS 30 ? CG ? A LYS 30 CG 15 1 Y 1 B LYS 30 ? CD ? A LYS 30 CD 16 1 Y 1 B LYS 30 ? CE ? A LYS 30 CE 17 1 Y 1 B LYS 30 ? NZ ? A LYS 30 NZ 18 1 Y 1 B LYS 32 ? CG ? A LYS 32 CG 19 1 Y 1 B LYS 32 ? CD ? A LYS 32 CD 20 1 Y 1 B LYS 32 ? CE ? A LYS 32 CE 21 1 Y 1 B LYS 32 ? NZ ? A LYS 32 NZ 22 1 Y 1 B ASP 67 ? CG ? A ASP 67 CG 23 1 Y 1 B ASP 67 ? OD1 ? A ASP 67 OD1 24 1 Y 1 B ASP 67 ? OD2 ? A ASP 67 OD2 25 1 Y 1 B LYS 114 ? CG ? A LYS 114 CG 26 1 Y 1 B LYS 114 ? CD ? A LYS 114 CD 27 1 Y 1 B LYS 114 ? CE ? A LYS 114 CE 28 1 Y 1 B LYS 114 ? NZ ? A LYS 114 NZ 29 1 Y 1 B LYS 117 ? CG ? A LYS 117 CG 30 1 Y 1 B LYS 117 ? CD ? A LYS 117 CD 31 1 Y 1 B LYS 117 ? CE ? A LYS 117 CE 32 1 Y 1 B LYS 117 ? NZ ? A LYS 117 NZ 33 1 Y 1 B LYS 122 ? CG ? A LYS 122 CG 34 1 Y 1 B LYS 122 ? CD ? A LYS 122 CD 35 1 Y 1 B LYS 122 ? CE ? A LYS 122 CE 36 1 Y 1 B LYS 122 ? NZ ? A LYS 122 NZ 37 1 Y 1 B LYS 166 ? CG ? A LYS 166 CG 38 1 Y 1 B LYS 166 ? CD ? A LYS 166 CD 39 1 Y 1 B LYS 166 ? CE ? A LYS 166 CE 40 1 Y 1 B LYS 166 ? NZ ? A LYS 166 NZ 41 1 Y 1 B LYS 185 ? CG ? A LYS 185 CG 42 1 Y 1 B LYS 185 ? CD ? A LYS 185 CD 43 1 Y 1 B LYS 185 ? CE ? A LYS 185 CE 44 1 Y 1 B LYS 185 ? NZ ? A LYS 185 NZ 45 1 Y 1 B LYS 192 ? CG ? A LYS 192 CG 46 1 Y 1 B LYS 192 ? CD ? A LYS 192 CD 47 1 Y 1 B LYS 192 ? CE ? A LYS 192 CE 48 1 Y 1 B LYS 192 ? NZ ? A LYS 192 NZ 49 1 N 1 B PLM 1194 ? O1 ? C PLM 1 O1 50 1 N 1 B PLM 1194 ? O2 ? C PLM 1 O2 51 1 N 1 B PLM 1194 ? CB ? C PLM 1 CB 52 1 N 1 B PLM 1194 ? CC ? C PLM 1 CC 53 1 N 1 B PLM 1194 ? CD ? C PLM 1 CD 54 1 N 1 B PLM 1194 ? CE ? C PLM 1 CE 55 1 N 1 B PLM 1194 ? CF ? C PLM 1 CF 56 1 N 1 B PLM 1194 ? CG ? C PLM 1 CG 57 1 N 1 B CDL 1195 ? C11 ? D CDL 1 C11 58 1 N 1 B CDL 1195 ? C12 ? D CDL 1 C12 59 1 N 1 B CDL 1195 ? C13 ? D CDL 1 C13 60 1 N 1 B CDL 1195 ? C14 ? D CDL 1 C14 61 1 N 1 B CDL 1195 ? C15 ? D CDL 1 C15 62 1 N 1 B CDL 1195 ? C16 ? D CDL 1 C16 63 1 N 1 B CDL 1195 ? C17 ? D CDL 1 C17 64 1 N 1 B CDL 1195 ? C18 ? D CDL 1 C18 65 1 N 1 B CDL 1195 ? C19 ? D CDL 1 C19 66 1 N 1 B CDL 1195 ? C20 ? D CDL 1 C20 67 1 N 1 B CDL 1195 ? C21 ? D CDL 1 C21 68 1 N 1 B CDL 1195 ? C22 ? D CDL 1 C22 69 1 N 1 B CDL 1195 ? C23 ? D CDL 1 C23 70 1 N 1 B CDL 1195 ? C24 ? D CDL 1 C24 71 1 N 1 B CDL 1195 ? C25 ? D CDL 1 C25 72 1 N 1 B CDL 1195 ? C26 ? D CDL 1 C26 73 1 N 1 B CDL 1195 ? C27 ? D CDL 1 C27 74 1 N 1 B CDL 1195 ? CA7 ? D CDL 1 CA7 75 1 N 1 B CDL 1195 ? OA9 ? D CDL 1 OA9 76 1 N 1 B CDL 1195 ? C31 ? D CDL 1 C31 77 1 N 1 B CDL 1195 ? C32 ? D CDL 1 C32 78 1 N 1 B CDL 1195 ? C33 ? D CDL 1 C33 79 1 N 1 B CDL 1195 ? C34 ? D CDL 1 C34 80 1 N 1 B CDL 1195 ? C35 ? D CDL 1 C35 81 1 N 1 B CDL 1195 ? C36 ? D CDL 1 C36 82 1 N 1 B CDL 1195 ? C37 ? D CDL 1 C37 83 1 N 1 B CDL 1195 ? C38 ? D CDL 1 C38 84 1 N 1 B CDL 1195 ? C39 ? D CDL 1 C39 85 1 N 1 B CDL 1195 ? C40 ? D CDL 1 C40 86 1 N 1 B CDL 1195 ? C41 ? D CDL 1 C41 87 1 N 1 B CDL 1195 ? C42 ? D CDL 1 C42 88 1 N 1 B CDL 1195 ? C43 ? D CDL 1 C43 89 1 N 1 B CDL 1195 ? C44 ? D CDL 1 C44 90 1 N 1 B CDL 1195 ? C45 ? D CDL 1 C45 91 1 N 1 B CDL 1195 ? C46 ? D CDL 1 C46 92 1 N 1 B CDL 1195 ? C47 ? D CDL 1 C47 93 1 N 1 B CDL 1195 ? CB4 ? D CDL 1 CB4 94 1 N 1 B CDL 1195 ? OB6 ? D CDL 1 OB6 95 1 N 1 B CDL 1195 ? CB5 ? D CDL 1 CB5 96 1 N 1 B CDL 1195 ? OB7 ? D CDL 1 OB7 97 1 N 1 B CDL 1195 ? C51 ? D CDL 1 C51 98 1 N 1 B CDL 1195 ? C52 ? D CDL 1 C52 99 1 N 1 B CDL 1195 ? C53 ? D CDL 1 C53 100 1 N 1 B CDL 1195 ? C54 ? D CDL 1 C54 101 1 N 1 B CDL 1195 ? C55 ? D CDL 1 C55 102 1 N 1 B CDL 1195 ? C56 ? D CDL 1 C56 103 1 N 1 B CDL 1195 ? C57 ? D CDL 1 C57 104 1 N 1 B CDL 1195 ? C58 ? D CDL 1 C58 105 1 N 1 B CDL 1195 ? C59 ? D CDL 1 C59 106 1 N 1 B CDL 1195 ? C60 ? D CDL 1 C60 107 1 N 1 B CDL 1195 ? C61 ? D CDL 1 C61 108 1 N 1 B CDL 1195 ? C62 ? D CDL 1 C62 109 1 N 1 B CDL 1195 ? C63 ? D CDL 1 C63 110 1 N 1 B CDL 1195 ? C64 ? D CDL 1 C64 111 1 N 1 B CDL 1195 ? C65 ? D CDL 1 C65 112 1 N 1 B CDL 1195 ? C66 ? D CDL 1 C66 113 1 N 1 B CDL 1195 ? C67 ? D CDL 1 C67 114 1 N 1 B CDL 1195 ? CB6 ? D CDL 1 CB6 115 1 N 1 B CDL 1195 ? OB8 ? D CDL 1 OB8 116 1 N 1 B CDL 1195 ? CB7 ? D CDL 1 CB7 117 1 N 1 B CDL 1195 ? OB9 ? D CDL 1 OB9 118 1 N 1 B CDL 1195 ? C71 ? D CDL 1 C71 119 1 N 1 B CDL 1195 ? C72 ? D CDL 1 C72 120 1 N 1 B CDL 1195 ? C73 ? D CDL 1 C73 121 1 N 1 B CDL 1195 ? C74 ? D CDL 1 C74 122 1 N 1 B CDL 1195 ? C75 ? D CDL 1 C75 123 1 N 1 B CDL 1195 ? C76 ? D CDL 1 C76 124 1 N 1 B CDL 1195 ? C77 ? D CDL 1 C77 125 1 N 1 B CDL 1195 ? C78 ? D CDL 1 C78 126 1 N 1 B CDL 1195 ? C79 ? D CDL 1 C79 127 1 N 1 B CDL 1195 ? C80 ? D CDL 1 C80 128 1 N 1 B CDL 1195 ? C81 ? D CDL 1 C81 129 1 N 1 B CDL 1195 ? C82 ? D CDL 1 C82 130 1 N 1 B CDL 1195 ? C83 ? D CDL 1 C83 131 1 N 1 B CDL 1195 ? C84 ? D CDL 1 C84 132 1 N 1 B CDL 1195 ? C85 ? D CDL 1 C85 133 1 N 1 B CDL 1195 ? C86 ? D CDL 1 C86 134 1 N 1 B CDL 1195 ? C87 ? D CDL 1 C87 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B VAL 193 ? A VAL 193 2 1 Y 1 B VAL 194 ? A VAL 194 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 S-ADENOSYL-L-HOMOCYSTEINE SAH 3 'PALMITIC ACID' PLM 4 CARDIOLIPIN CDL #