HEADER LYASE 28-SEP-11 4A2S TITLE STRUCTURE OF THE ENGINEERED RETRO-ALDOLASE RA95.5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TIM-BARREL FOLD, RESIDUES 1-245; COMPND 5 SYNONYM: IGPS, ENGINEERED RETRO-ALDOL ENZYME RA95.5-5; COMPND 6 EC: 4.1.1.48; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: THE SEQUENCE WAS DESIGNED BASED ON INDOLE-3-GLYCEROL COMPND 10 PHOSPHATE SYNTHASE NATURALLY FOUND IN SULFOLOBUS SOLFATARICUS. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 2287; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: GOLD; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-29B(PLUS) KEYWDS LYASE, ENGINEERED ENZYME, DIRECTED EVOLUTION EXPDTA X-RAY DIFFRACTION AUTHOR L.GIGER,S.CANER,P.KAST,D.BAKER,N.BAN,D.HILVERT REVDAT 8 20-DEC-23 4A2S 1 REMARK REVDAT 7 15-MAY-19 4A2S 1 JRNL REMARK LINK ATOM REVDAT 6 31-JUL-13 4A2S 1 JRNL REVDAT 5 19-JUN-13 4A2S 1 JRNL REVDAT 4 12-JUN-13 4A2S 1 JRNL REVDAT 3 06-FEB-13 4A2S 1 REMARK HETATM REVDAT 2 21-NOV-12 4A2S 1 HETATM REVDAT 1 07-NOV-12 4A2S 0 JRNL AUTH L.GIGER,S.CANER,R.OBEXER,P.KAST,D.BAKER,N.BAN,D.HILVERT JRNL TITL EVOLUTION OF A DESIGNED RETRO-ALDOLASE LEADS TO COMPLETE JRNL TITL 2 ACTIVE SITE REMODELING. JRNL REF NAT.CHEM.BIOL. V. 9 494 2013 JRNL REFN ESSN 1552-4469 JRNL PMID 23748672 JRNL DOI 10.1038/NCHEMBIO.1276 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 62213 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.133 REMARK 3 R VALUE (WORKING SET) : 0.132 REMARK 3 FREE R VALUE : 0.162 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1866 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 7.9983 - 3.2241 1.00 4877 151 0.1510 0.1663 REMARK 3 2 3.2241 - 2.5876 0.99 4690 145 0.1322 0.1748 REMARK 3 3 2.5876 - 2.2690 1.00 4700 146 0.1113 0.1414 REMARK 3 4 2.2690 - 2.0655 1.00 4669 144 0.1053 0.1258 REMARK 3 5 2.0655 - 1.9196 0.99 4603 142 0.0998 0.1443 REMARK 3 6 1.9196 - 1.8078 1.00 4674 145 0.1001 0.1449 REMARK 3 7 1.8078 - 1.7182 1.00 4631 143 0.1053 0.1532 REMARK 3 8 1.7182 - 1.6441 1.00 4618 143 0.1182 0.1593 REMARK 3 9 1.6441 - 1.5813 1.00 4581 142 0.1280 0.1598 REMARK 3 10 1.5813 - 1.5271 1.00 4633 143 0.1457 0.1639 REMARK 3 11 1.5271 - 1.4797 1.00 4599 141 0.1755 0.2325 REMARK 3 12 1.4797 - 1.4376 1.00 4573 142 0.2032 0.2578 REMARK 3 13 1.4376 - 1.4000 0.98 4499 139 0.2386 0.2810 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.30 REMARK 3 SHRINKAGE RADIUS : 0.05 REMARK 3 K_SOL : 0.60 REMARK 3 B_SOL : 92.55 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.08730 REMARK 3 B22 (A**2) : -3.25440 REMARK 3 B33 (A**2) : 0.59360 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2296 REMARK 3 ANGLE : 1.546 3125 REMARK 3 CHIRALITY : 0.113 350 REMARK 3 PLANARITY : 0.007 408 REMARK 3 DIHEDRAL : 17.170 923 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4A2S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-SEP-11. REMARK 100 THE DEPOSITION ID IS D_1290049768. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62630 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 150.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.02000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.87000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.450 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1LBL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES KOH PH 7.6, 23% W/V PEG REMARK 280 3350,20 MM NA2HPO4, 28 DEG. CELSIUS., VAPOR DIFFUSION, REMARK 280 TEMPERATURE 301K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.90500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.60500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.40500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.60500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.90500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.40500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LYS 10 TO GLU REMARK 400 ENGINEERED RESIDUE IN CHAIN A, PHE 22 TO VAL REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 51 TO TYR REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LYS 53 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LEU 83 TO LYS REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LYS 110 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 159 TO LEU REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASN 180 TO PHE REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ARG 182 TO MET REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASP 183 TO ASN REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LEU 184 TO PHE REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 210 TO LYS REMARK 400 ENGINEERED RESIDUE IN CHAIN A, SER 211 TO LEU REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLY 233 TO SER REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 249 REMARK 465 SER A 250 REMARK 465 LEU A 251 REMARK 465 GLU A 252 REMARK 465 HIS A 253 REMARK 465 HIS A 254 REMARK 465 HIS A 255 REMARK 465 HIS A 256 REMARK 465 HIS A 257 REMARK 465 HIS A 258 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C MET A 237 H ARG A 238 1.31 REMARK 500 OE2 GLU A 94 HE ARG A 97 1.47 REMARK 500 C SER A 181 H MET A 182 1.56 REMARK 500 C ILE A 247 H GLU A 248 1.57 REMARK 500 C SER A 181 H MET A 182 1.58 REMARK 500 C ILE A 247 H GLU A 248 1.58 REMARK 500 NH1 ARG A 216 OE2 GLU A 220 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 64 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 64 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 MET A 109 CB - CG - SD ANGL. DEV. = -22.8 DEGREES REMARK 500 ARG A 140 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 140 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 57 -9.44 -56.63 REMARK 500 LEU A 60 109.99 -37.80 REMARK 500 TYR A 76 -39.98 -131.03 REMARK 500 PHE A 180 -84.15 -97.57 REMARK 500 PHE A 180 -86.57 -97.57 REMARK 500 SER A 181 55.84 70.46 REMARK 500 SER A 181 48.95 78.49 REMARK 500 SER A 233 -89.16 -115.79 REMARK 500 SER A 233 -84.64 -114.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3NK A 1083 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3NK A 1210 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4A2R RELATED DB: PDB REMARK 900 STRUCTURE OF THE ENGINEERED RETRO-ALDOLASE RA95.5-5 REMARK 900 RELATED ID: 1LBL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE(IGPS) IN REMARK 900 COMPLEX WITH 1-(O-CARBOXYPHENYLAMINO )-1-DEOXYRIBULOSE 5'-PHOSPHATE REMARK 900 (CDRP) REMARK 900 RELATED ID: 1JUL RELATED DB: PDB REMARK 900 INDOLE-3-GLYCEROLPHOSPHATE SYNTHASE FROM SULFOLOBUS SOLFATARICUS IN REMARK 900 A SECOND ORTHORHOMBIC CRYSTAL FORM REMARK 900 RELATED ID: 1JUK RELATED DB: PDB REMARK 900 INDOLE-3-GLYCEROLPHOSPHATE SYNTHASE FROM SULFOLOBUS SOLFATARICUS IN REMARK 900 A TRIGONAL CRYSTAL FORM REMARK 900 RELATED ID: 1IGS RELATED DB: PDB REMARK 900 INDOLE-3-GLYCEROLPHOSPHATE SYNTHASE FROM SULFOLOBUS SOLFATARICUS AT REMARK 900 2.0 A RESOLUTION REMARK 900 RELATED ID: 2C3Z RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A TRUNCATED VARIANT OF INDOLE-3- GLYCEROL REMARK 900 PHOSPHATE SYNTHASE FROM SULFOLOBUS SOLFATARICUS REMARK 900 RELATED ID: 1A53 RELATED DB: PDB REMARK 900 COMPLEX OF INDOLE-3-GLYCEROLPHOSPHATE SYNTHASE FROM SULFOLOBUS REMARK 900 SOLFATARICUS WITH INDOLE-3-GLYCEROLPHOSPHATE AT 2.0 A RESOLUTION REMARK 900 RELATED ID: 1LBF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF INDOLE-3-GLYCEROL PHOSPHATE SYNTASE (IGPS)WITH REMARK 900 REDUCED 1-(O-CABOXYPHENYLAMINO)-1- DEOXYRIBULOSE5-PHOSPHATE (RCDRP) DBREF 4A2S A 1 245 UNP Q06121 TRPC_SULSO 1 245 SEQADV 4A2S GLU A 10 UNP Q06121 LYS 10 ENGINEERED MUTATION SEQADV 4A2S VAL A 22 UNP Q06121 PHE 22 ENGINEERED MUTATION SEQADV 4A2S TYR A 51 UNP Q06121 GLU 51 ENGINEERED MUTATION SEQADV 4A2S SER A 53 UNP Q06121 LYS 53 ENGINEERED MUTATION SEQADV 4A2S LYS A 83 UNP Q06121 LEU 83 ENGINEERED MUTATION SEQADV 4A2S SER A 110 UNP Q06121 LYS 110 ENGINEERED MUTATION SEQADV 4A2S LEU A 159 UNP Q06121 GLU 159 ENGINEERED MUTATION SEQADV 4A2S PHE A 180 UNP Q06121 ASN 180 ENGINEERED MUTATION SEQADV 4A2S MET A 182 UNP Q06121 ARG 182 ENGINEERED MUTATION SEQADV 4A2S ASN A 183 UNP Q06121 ASP 183 ENGINEERED MUTATION SEQADV 4A2S PHE A 184 UNP Q06121 LEU 184 ENGINEERED MUTATION SEQADV 4A2S LYS A 210 UNP Q06121 GLU 210 ENGINEERED MUTATION SEQADV 4A2S LEU A 211 UNP Q06121 SER 211 ENGINEERED MUTATION SEQADV 4A2S SER A 233 UNP Q06121 GLY 233 ENGINEERED MUTATION SEQADV 4A2S LEU A 246 UNP Q06121 EXPRESSION TAG SEQADV 4A2S ILE A 247 UNP Q06121 EXPRESSION TAG SEQADV 4A2S GLU A 248 UNP Q06121 EXPRESSION TAG SEQADV 4A2S GLY A 249 UNP Q06121 EXPRESSION TAG SEQADV 4A2S SER A 250 UNP Q06121 EXPRESSION TAG SEQADV 4A2S LEU A 251 UNP Q06121 EXPRESSION TAG SEQADV 4A2S GLU A 252 UNP Q06121 EXPRESSION TAG SEQADV 4A2S HIS A 253 UNP Q06121 EXPRESSION TAG SEQADV 4A2S HIS A 254 UNP Q06121 EXPRESSION TAG SEQADV 4A2S HIS A 255 UNP Q06121 EXPRESSION TAG SEQADV 4A2S HIS A 256 UNP Q06121 EXPRESSION TAG SEQADV 4A2S HIS A 257 UNP Q06121 EXPRESSION TAG SEQADV 4A2S HIS A 258 UNP Q06121 EXPRESSION TAG SEQRES 1 A 258 MET PRO ARG TYR LEU LYS GLY TRP LEU GLU ASP VAL VAL SEQRES 2 A 258 GLN LEU SER LEU ARG ARG PRO SER VAL ARG ALA SER ARG SEQRES 3 A 258 GLN ARG PRO ILE ILE SER LEU ASN GLU ARG ILE LEU GLU SEQRES 4 A 258 PHE ASN LYS ARG ASN ILE THR ALA ILE ILE ALA TYR TYR SEQRES 5 A 258 SER ARG LYS SER PRO SER GLY LEU ASP VAL GLU ARG ASP SEQRES 6 A 258 PRO ILE GLU TYR ALA LYS PHE MET GLU ARG TYR ALA VAL SEQRES 7 A 258 GLY LEU SER ILE LYS THR GLU GLU LYS TYR PHE ASN GLY SEQRES 8 A 258 SER TYR GLU THR LEU ARG LYS ILE ALA SER SER VAL SER SEQRES 9 A 258 ILE PRO ILE LEU MET SER ASP PHE ILE VAL LYS GLU SER SEQRES 10 A 258 GLN ILE ASP ASP ALA TYR ASN LEU GLY ALA ASP THR VAL SEQRES 11 A 258 LEU LEU ILE VAL LYS ILE LEU THR GLU ARG GLU LEU GLU SEQRES 12 A 258 SER LEU LEU GLU TYR ALA ARG SER TYR GLY MET GLU PRO SEQRES 13 A 258 LEU ILE LEU ILE ASN ASP GLU ASN ASP LEU ASP ILE ALA SEQRES 14 A 258 LEU ARG ILE GLY ALA ARG PHE ILE GLY ILE PHE SER MET SEQRES 15 A 258 ASN PHE GLU THR GLY GLU ILE ASN LYS GLU ASN GLN ARG SEQRES 16 A 258 LYS LEU ILE SER MET ILE PRO SER ASN VAL VAL LYS VAL SEQRES 17 A 258 ALA LYS LEU GLY ILE SER GLU ARG ASN GLU ILE GLU GLU SEQRES 18 A 258 LEU ARG LYS LEU GLY VAL ASN ALA PHE LEU ILE SER SER SEQRES 19 A 258 SER LEU MET ARG ASN PRO GLU LYS ILE LYS GLU LEU ILE SEQRES 20 A 258 GLU GLY SER LEU GLU HIS HIS HIS HIS HIS HIS HET 3NK A1083 62 HET 3NK A1210 31 HETNAM 3NK 1-(6-METHOXYNAPHTHALEN-2-YL)BUTANE-1,3-DIONE FORMUL 2 3NK 2(C15 H14 O3) FORMUL 4 HOH *208(H2 O) HELIX 1 1 LYS A 6 ARG A 18 1 13 HELIX 2 2 SER A 32 ARG A 43 1 12 HELIX 3 3 ASP A 65 ARG A 75 1 11 HELIX 4 4 SER A 92 SER A 101 1 10 HELIX 5 5 LYS A 115 GLY A 126 1 12 HELIX 6 6 LYS A 135 LEU A 137 5 3 HELIX 7 7 THR A 138 TYR A 152 1 15 HELIX 8 8 ASP A 162 ILE A 172 1 11 HELIX 9 9 ASN A 190 MET A 200 1 11 HELIX 10 10 GLU A 215 LEU A 225 1 11 HELIX 11 11 SER A 233 ASN A 239 1 7 HELIX 12 12 GLU A 241 GLU A 248 1 8 SHEET 1 AA 9 ILE A 48 TYR A 52 0 SHEET 2 AA 9 ALA A 229 ILE A 232 1 O PHE A 230 N ILE A 49 SHEET 3 AA 9 VAL A 206 LYS A 210 1 O ALA A 209 N LEU A 231 SHEET 4 AA 9 PHE A 176 ILE A 179 1 O ILE A 177 N VAL A 208 SHEET 5 AA 9 LEU A 157 ILE A 160 1 O ILE A 158 N GLY A 178 SHEET 6 AA 9 THR A 129 ILE A 133 1 O VAL A 130 N LEU A 157 SHEET 7 AA 9 ILE A 107 SER A 110 1 O MET A 109 N LEU A 131 SHEET 8 AA 9 GLY A 79 LYS A 83 1 O LEU A 80 N LEU A 108 SHEET 9 AA 9 ILE A 48 TYR A 52 1 O ALA A 50 N SER A 81 LINK NZ ALYS A 83 C13A3NK A1083 1555 1555 1.35 LINK NZ BLYS A 83 C13B3NK A1083 1555 1555 1.35 LINK NZ LYS A 210 C13 3NK A1210 1555 1555 1.35 SITE 1 AC1 15 TRP A 8 LEU A 9 LYS A 83 PHE A 89 SITE 2 AC1 15 SER A 110 ASP A 111 PHE A 112 ILE A 133 SITE 3 AC1 15 LYS A 135 LEU A 159 ASN A 161 PHE A 180 SITE 4 AC1 15 PHE A 184 3NK A1210 HOH A2107 SITE 1 AC2 6 TRP A 8 SER A 58 MET A 182 PHE A 184 SITE 2 AC2 6 LYS A 210 3NK A1083 CRYST1 53.810 62.810 93.210 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018584 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015921 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010728 0.00000