HEADER ISOMERASE 04-OCT-11 4A3Q TITLE THE 2.15 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF STAPHYLOCOCCUS TITLE 2 AUREUS ALANINE RACEMASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALANINE RACEMASE 1; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.1.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 STRAIN: MU50; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET26B KEYWDS ISOMERASE, PLP-DEPENDENT ENZYMES EXPDTA X-RAY DIFFRACTION AUTHOR E.R.SCALETTI,S.R.LUCKNER,K.L.KRAUSE REVDAT 3 20-DEC-23 4A3Q 1 REMARK LINK REVDAT 2 28-MAR-12 4A3Q 1 JRNL REVDAT 1 28-DEC-11 4A3Q 0 JRNL AUTH E.R.SCALETTI,S.R.LUCKNER,K.L.KRAUSE JRNL TITL STRUCTURAL FEATURES AND KINETIC CHARACTERIZATION OF ALANINE JRNL TITL 2 RACEMASE FROM STAPHYLOCOCCUS AUREUS (MU50) JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 68 82 2012 JRNL REFN ISSN 0907-4449 JRNL PMID 22194336 JRNL DOI 10.1107/S0907444911050682 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 46865 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2519 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3055 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 164 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5632 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 103 REMARK 3 SOLVENT ATOMS : 266 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.215 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.188 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.093 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5837 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7910 ; 1.350 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 708 ; 6.087 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 261 ;36.179 ;24.866 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1031 ;14.219 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;16.955 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 896 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4288 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3554 ; 0.881 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5756 ; 1.656 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2283 ; 2.427 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2154 ; 4.033 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 170-176 AND 257-274 ARE DISORDERED REMARK 4 REMARK 4 4A3Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-OCT-11. REMARK 100 THE DEPOSITION ID IS D_1290049873. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU-MSC R-AXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49388 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 51.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.19000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1SFT REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE TRIHYDRATE (PH REMARK 280 5.0), 1.8 M AMMONIUM SULFATE. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.57000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.99500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.97000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.99500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.57000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.97000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -225.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 170 REMARK 465 CYS A 171 REMARK 465 ALA A 172 REMARK 465 ASP A 173 REMARK 465 GLU A 174 REMARK 465 PRO A 175 REMARK 465 GLY A 176 REMARK 465 LEU A 257 REMARK 465 GLN A 258 REMARK 465 ALA A 259 REMARK 465 GLY A 260 REMARK 465 GLU A 261 REMARK 465 SER A 262 REMARK 465 VAL A 263 REMARK 465 SER A 264 REMARK 465 TYR A 265 REMARK 465 GLY A 266 REMARK 465 ALA A 267 REMARK 465 THR A 268 REMARK 465 TYR A 269 REMARK 465 THR A 270 REMARK 465 ALA A 271 REMARK 465 THR A 272 REMARK 465 ASP A 273 REMARK 465 PRO A 274 REMARK 465 MET B 1 REMARK 465 ALA B 170 REMARK 465 CYS B 171 REMARK 465 ALA B 172 REMARK 465 ASP B 173 REMARK 465 GLU B 174 REMARK 465 PRO B 175 REMARK 465 GLY B 176 REMARK 465 ASP B 177 REMARK 465 MET B 178 REMARK 465 GLN B 258 REMARK 465 ALA B 259 REMARK 465 GLY B 260 REMARK 465 GLU B 261 REMARK 465 SER B 262 REMARK 465 VAL B 263 REMARK 465 SER B 264 REMARK 465 TYR B 265 REMARK 465 GLY B 266 REMARK 465 ALA B 267 REMARK 465 THR B 268 REMARK 465 TYR B 269 REMARK 465 THR B 270 REMARK 465 ALA B 271 REMARK 465 THR B 272 REMARK 465 ASP B 273 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 138 CG CD NE CZ NH1 NH2 REMARK 470 THR A 256 OG1 CG2 REMARK 470 MET B 136 CG SD CE REMARK 470 ARG B 138 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 257 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 138 -129.20 -111.09 REMARK 500 CYS A 201 -12.85 -140.63 REMARK 500 ASN A 300 49.24 36.86 REMARK 500 ASN A 334 44.49 -88.29 REMARK 500 GLU A 337 78.43 -104.12 REMARK 500 THR A 351 -159.49 -145.85 REMARK 500 THR B 134 48.26 -108.38 REMARK 500 ARG B 138 -94.08 -90.74 REMARK 500 ASN B 203 -164.94 -79.93 REMARK 500 CYS B 212 71.13 50.44 REMARK 500 ILE B 291 -9.81 -59.11 REMARK 500 ASN B 300 49.57 34.46 REMARK 500 ASN B 334 45.62 -85.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP A 1039 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1383 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1384 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1385 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1386 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1387 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1388 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1389 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP B 1039 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1383 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1384 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1385 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1386 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1387 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1388 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1389 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1390 DBREF 4A3Q A 1 382 UNP P63479 ALR1_STAAM 1 382 DBREF 4A3Q B 1 382 UNP P63479 ALR1_STAAM 1 382 SEQRES 1 A 382 MET SER ASP LYS TYR TYR ARG SER ALA TYR MET ASN VAL SEQRES 2 A 382 ASP LEU ASN ALA VAL ALA SER ASN PHE LYS VAL PHE SER SEQRES 3 A 382 THR LEU HIS PRO ASN LYS THR VAL MET ALA VAL VAL LYS SEQRES 4 A 382 ALA ASN ALA TYR GLY LEU GLY SER VAL LYS VAL ALA ARG SEQRES 5 A 382 HIS LEU MET GLU ASN GLY ALA THR PHE PHE ALA VAL ALA SEQRES 6 A 382 THR LEU ASP GLU ALA ILE GLU LEU ARG MET HIS GLY ILE SEQRES 7 A 382 THR ALA LYS ILE LEU VAL LEU GLY VAL LEU PRO ALA LYS SEQRES 8 A 382 ASP ILE ASP LYS ALA ILE GLN HIS ARG VAL ALA LEU THR SEQRES 9 A 382 VAL PRO SER LYS GLN TRP LEU LYS GLU ALA ILE LYS ASN SEQRES 10 A 382 ILE SER GLY GLU GLN GLU LYS LYS LEU TRP LEU HIS ILE SEQRES 11 A 382 LYS LEU ASP THR GLY MET GLY ARG LEU GLY ILE LYS ASP SEQRES 12 A 382 THR ASN THR TYR GLN GLU VAL ILE GLU ILE ILE GLN GLN SEQRES 13 A 382 TYR GLU GLN LEU VAL PHE GLU GLY VAL PHE THR HIS PHE SEQRES 14 A 382 ALA CYS ALA ASP GLU PRO GLY ASP MET THR THR GLU GLN SEQRES 15 A 382 TYR GLN ARG PHE LYS ASP MET VAL ASN GLU ALA ILE LYS SEQRES 16 A 382 PRO GLU TYR ILE HIS CYS GLN ASN SER ALA GLY SER LEU SEQRES 17 A 382 LEU MET ASP CYS GLN PHE CYS ASN ALA ILE ARG PRO GLY SEQRES 18 A 382 ILE SER LEU TYR GLY TYR TYR PRO SER GLU TYR VAL GLN SEQRES 19 A 382 GLN LYS VAL LYS VAL HIS LEU LYS PRO SER VAL GLN LEU SEQRES 20 A 382 ILE ALA ASN VAL VAL GLN THR LYS THR LEU GLN ALA GLY SEQRES 21 A 382 GLU SER VAL SER TYR GLY ALA THR TYR THR ALA THR ASP SEQRES 22 A 382 PRO THR THR ILE ALA LEU LEU PRO ILE GLY TYR ALA ASP SEQRES 23 A 382 GLY TYR LEU ARG ILE MET GLN GLY SER PHE VAL ASN VAL SEQRES 24 A 382 ASN GLY HIS GLN CYS GLU VAL ILE GLY ARG VAL CYS MET SEQRES 25 A 382 ASP GLN THR ILE VAL LYS VAL PRO ASP GLN VAL LYS ALA SEQRES 26 A 382 GLY ASP SER VAL ILE LEU ILE ASP ASN HIS ARG GLU SER SEQRES 27 A 382 PRO GLN SER VAL GLU VAL VAL ALA GLU LYS GLN HIS THR SEQRES 28 A 382 ILE ASN TYR GLU VAL LEU CYS ASN LEU SER ARG ARG LEU SEQRES 29 A 382 PRO ARG ILE TYR HIS ASP GLY ASP GLN ARG PHE VAL THR SEQRES 30 A 382 ASN GLU LEU LEU LYS SEQRES 1 B 382 MET SER ASP LYS TYR TYR ARG SER ALA TYR MET ASN VAL SEQRES 2 B 382 ASP LEU ASN ALA VAL ALA SER ASN PHE LYS VAL PHE SER SEQRES 3 B 382 THR LEU HIS PRO ASN LYS THR VAL MET ALA VAL VAL LYS SEQRES 4 B 382 ALA ASN ALA TYR GLY LEU GLY SER VAL LYS VAL ALA ARG SEQRES 5 B 382 HIS LEU MET GLU ASN GLY ALA THR PHE PHE ALA VAL ALA SEQRES 6 B 382 THR LEU ASP GLU ALA ILE GLU LEU ARG MET HIS GLY ILE SEQRES 7 B 382 THR ALA LYS ILE LEU VAL LEU GLY VAL LEU PRO ALA LYS SEQRES 8 B 382 ASP ILE ASP LYS ALA ILE GLN HIS ARG VAL ALA LEU THR SEQRES 9 B 382 VAL PRO SER LYS GLN TRP LEU LYS GLU ALA ILE LYS ASN SEQRES 10 B 382 ILE SER GLY GLU GLN GLU LYS LYS LEU TRP LEU HIS ILE SEQRES 11 B 382 LYS LEU ASP THR GLY MET GLY ARG LEU GLY ILE LYS ASP SEQRES 12 B 382 THR ASN THR TYR GLN GLU VAL ILE GLU ILE ILE GLN GLN SEQRES 13 B 382 TYR GLU GLN LEU VAL PHE GLU GLY VAL PHE THR HIS PHE SEQRES 14 B 382 ALA CYS ALA ASP GLU PRO GLY ASP MET THR THR GLU GLN SEQRES 15 B 382 TYR GLN ARG PHE LYS ASP MET VAL ASN GLU ALA ILE LYS SEQRES 16 B 382 PRO GLU TYR ILE HIS CYS GLN ASN SER ALA GLY SER LEU SEQRES 17 B 382 LEU MET ASP CYS GLN PHE CYS ASN ALA ILE ARG PRO GLY SEQRES 18 B 382 ILE SER LEU TYR GLY TYR TYR PRO SER GLU TYR VAL GLN SEQRES 19 B 382 GLN LYS VAL LYS VAL HIS LEU LYS PRO SER VAL GLN LEU SEQRES 20 B 382 ILE ALA ASN VAL VAL GLN THR LYS THR LEU GLN ALA GLY SEQRES 21 B 382 GLU SER VAL SER TYR GLY ALA THR TYR THR ALA THR ASP SEQRES 22 B 382 PRO THR THR ILE ALA LEU LEU PRO ILE GLY TYR ALA ASP SEQRES 23 B 382 GLY TYR LEU ARG ILE MET GLN GLY SER PHE VAL ASN VAL SEQRES 24 B 382 ASN GLY HIS GLN CYS GLU VAL ILE GLY ARG VAL CYS MET SEQRES 25 B 382 ASP GLN THR ILE VAL LYS VAL PRO ASP GLN VAL LYS ALA SEQRES 26 B 382 GLY ASP SER VAL ILE LEU ILE ASP ASN HIS ARG GLU SER SEQRES 27 B 382 PRO GLN SER VAL GLU VAL VAL ALA GLU LYS GLN HIS THR SEQRES 28 B 382 ILE ASN TYR GLU VAL LEU CYS ASN LEU SER ARG ARG LEU SEQRES 29 B 382 PRO ARG ILE TYR HIS ASP GLY ASP GLN ARG PHE VAL THR SEQRES 30 B 382 ASN GLU LEU LEU LYS HET PLP A1039 15 HET SO4 A1383 5 HET SO4 A1384 5 HET SO4 A1385 5 HET SO4 A1386 5 HET SO4 A1387 5 HET SO4 A1388 5 HET ACT A1389 4 HET PLP B1039 15 HET SO4 B1383 5 HET SO4 B1384 5 HET SO4 B1385 5 HET SO4 B1386 5 HET SO4 B1387 5 HET SO4 B1388 5 HET SO4 B1389 5 HET ACT B1390 4 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 3 PLP 2(C8 H10 N O6 P) FORMUL 4 SO4 13(O4 S 2-) FORMUL 10 ACT 2(C2 H3 O2 1-) FORMUL 20 HOH *266(H2 O) HELIX 1 1 LEU A 15 LEU A 28 1 14 HELIX 2 2 SER A 47 ASN A 57 1 11 HELIX 3 3 LEU A 67 MET A 75 1 9 HELIX 4 4 ILE A 93 HIS A 99 1 7 HELIX 5 5 LYS A 108 ASN A 117 1 10 HELIX 6 6 THR A 144 GLN A 156 1 13 HELIX 7 7 ASP A 177 ASN A 191 1 15 HELIX 8 8 SER A 204 LEU A 209 1 6 HELIX 9 9 GLU A 231 LYS A 236 1 6 HELIX 10 10 VAL A 342 GLN A 349 1 8 HELIX 11 11 ASN A 353 ASN A 359 1 7 HELIX 12 12 LEU B 15 LEU B 28 1 14 HELIX 13 13 SER B 47 GLU B 56 1 10 HELIX 14 14 LEU B 67 HIS B 76 1 10 HELIX 15 15 ILE B 93 HIS B 99 1 7 HELIX 16 16 LYS B 108 ASN B 117 1 10 HELIX 17 17 THR B 144 GLN B 156 1 13 HELIX 18 18 THR B 179 ASN B 191 1 13 HELIX 19 19 SER B 204 LEU B 209 1 6 HELIX 20 20 GLU B 231 LYS B 236 1 6 HELIX 21 21 VAL B 342 GLN B 349 1 8 HELIX 22 22 ASN B 353 ASN B 359 1 7 SHEET 1 1 1 ALA A 9 ASP A 14 0 SHEET 1 2 1 THR A 33 VAL A 34 0 SHEET 1 3 1 ALA A 36 VAL A 37 0 SHEET 1 4 1 PHE A 61 VAL A 64 0 SHEET 1 5 1 LYS A 81 VAL A 84 0 SHEET 1 6 1 VAL A 101 VAL A 105 0 SHEET 1 7 1 LEU A 126 LYS A 131 0 SHEET 1 8 1 LEU A 160 PHE A 166 0 SHEET 1 9 1 TYR A 198 GLN A 202 0 SHEET 1 10 1 ALA A 217 ILE A 218 0 SHEET 1 11 1 VAL A 245 VAL A 251 0 SHEET 1 12 1 GLN A 253 LYS A 255 0 SHEET 1 13 1 THR A 276 LEU A 280 0 SHEET 1 14 1 SER A 295 VAL A 299 0 SHEET 1 15 1 HIS A 302 VAL A 306 0 SHEET 1 16 1 THR A 315 VAL A 319 0 SHEET 1 17 1 ASP A 327 ILE A 332 0 SHEET 1 18 1 ARG A 366 ASP A 370 0 SHEET 1 19 1 GLN A 373 THR A 377 0 SHEET 1 20 1 ALA B 9 ASP B 14 0 SHEET 1 21 1 THR B 33 VAL B 34 0 SHEET 1 22 1 ALA B 36 VAL B 37 0 SHEET 1 23 1 PHE B 61 VAL B 64 0 SHEET 1 24 1 LYS B 81 VAL B 84 0 SHEET 1 25 1 LEU B 103 VAL B 105 0 SHEET 1 26 1 LEU B 126 LYS B 131 0 SHEET 1 27 1 LEU B 160 PHE B 166 0 SHEET 1 28 1 TYR B 198 HIS B 200 0 SHEET 1 29 1 ALA B 217 ILE B 218 0 SHEET 1 30 1 VAL B 245 VAL B 251 0 SHEET 1 31 1 GLN B 253 THR B 256 0 SHEET 1 32 1 THR B 276 LEU B 280 0 SHEET 1 33 1 SER B 295 VAL B 299 0 SHEET 1 34 1 HIS B 302 VAL B 306 0 SHEET 1 35 1 THR B 315 LYS B 318 0 SHEET 1 36 1 ASP B 327 ILE B 332 0 SHEET 1 37 1 ARG B 366 ASP B 370 0 SHEET 1 38 1 GLN B 373 THR B 377 0 LINK NZ LYS A 39 C4A PLP A1039 1555 1555 1.36 LINK NZ LYS B 39 C4A PLP B1039 1555 1555 1.36 SITE 1 AC1 10 LYS A 39 TYR A 43 HIS A 168 ASN A 203 SITE 2 AC1 10 SER A 204 ARG A 219 GLY A 221 ILE A 222 SITE 3 AC1 10 TYR A 354 HOH A2032 SITE 1 AC2 6 TYR A 228 GLN A 234 HIS A 240 LEU A 241 SITE 2 AC2 6 ARG A 336 HOH A2118 SITE 1 AC3 4 SER A 107 LYS A 108 GLN A 109 THR A 146 SITE 1 AC4 4 VAL A 48 LYS A 49 ARG A 52 HIS A 76 SITE 1 AC5 4 HIS A 335 ARG A 336 GLU A 337 HOH A2138 SITE 1 AC6 4 HIS A 29 PRO A 30 ASN A 31 LYS A 32 SITE 1 AC7 6 LYS A 131 ARG A 138 LEU A 139 HIS A 168 SITE 2 AC7 6 HOH A2080 GLN B 314 SITE 1 AC8 5 CYS A 311 MET A 312 HOH A2135 LYS B 39 SITE 2 AC8 5 PLP B1039 SITE 1 AC9 10 ACT A1389 LYS B 39 TYR B 43 HIS B 168 SITE 2 AC9 10 SER B 204 ARG B 219 GLY B 221 ILE B 222 SITE 3 AC9 10 TYR B 354 HOH B2015 SITE 1 BC1 7 TYR B 228 GLN B 234 HIS B 240 LEU B 241 SITE 2 BC1 7 ARG B 336 HOH B2067 HOH B2076 SITE 1 BC2 3 LYS B 49 ARG B 52 HIS B 76 SITE 1 BC3 7 SER A 361 ARG A 362 HOH A2152 LEU B 360 SITE 2 BC3 7 SER B 361 ARG B 362 HOH B2105 SITE 1 BC4 3 SER B 107 LYS B 108 GLN B 109 SITE 1 BC5 4 HIS B 335 ARG B 336 GLU B 337 HOH B2096 SITE 1 BC6 8 LYS A 108 LYS A 112 HIS B 29 PRO B 30 SITE 2 BC6 8 ASN B 31 LYS B 32 ASP B 211 GLN B 213 SITE 1 BC7 4 LYS B 131 ARG B 138 LEU B 139 HIS B 168 SITE 1 BC8 7 LYS A 39 TYR A 354 TYR B 284 CYS B 311 SITE 2 BC8 7 MET B 312 HOH B2078 HOH B2091 CRYST1 65.140 113.940 125.990 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015352 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008777 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007937 0.00000