data_4A5U # _entry.id 4A5U # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4A5U PDBE EBI-50101 WWPDB D_1290050101 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4A5U _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2011-10-28 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Robin, C.' 1 'Beaurepaire, L.' 2 'Bressanelli, S.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'A Compact Viral Processing Proteinase/Ubiquitin Hydrolase from the Otu Family.' 'Plos Pathog.' 9 3560 ? 2013 ? US 1553-7366 ? ? 23966860 10.1371/JOURNAL.PPAT.1003560 1 'In Praise of Impurity: 30S Ribosomal S15 Protein-Assisted Crystallization of Turnip Yellow Mosaic Virus Proteinase.' 'Acta Crystallogr.,Sect.F' 68 486 ? 2012 ? DK 1744-3091 ? ? 22505427 10.1107/S1744309112008445 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Lombardi, C.' 1 primary 'Ayach, M.' 2 primary 'Beaurepaire, L.' 3 primary 'Chenon, M.' 4 primary 'Andreani, J.' 5 primary 'Guerois, R.' 6 primary 'Jupin, I.' 7 primary 'Bressanelli, S.' 8 1 'Robin, C.' 9 1 'Beaurepaire, L.' 10 1 'Chenon, M.' 11 1 'Jupin, I.' 12 1 'Bressanelli, S.' 13 # _cell.entry_id 4A5U _cell.length_a 135.200 _cell.length_b 135.200 _cell.length_c 41.900 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4A5U _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNA REPLICASE POLYPROTEIN' 17778.873 1 2.7.7.48 ? 'POLYPROTEIN PROCESSING PROTEINASE DOMAIN, RESIDUES 728-879' ? 2 polymer nat '30S RIBOSOMAL PROTEIN S15' 10159.621 1 ? ? 'RESIDUES 2-89' ? 3 water nat water 18.015 194 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MHHHHHHGSSQLLPAPLTNDPTAIGPVLPFEELHPRRYPENTATFLTRLRSLPSNHLPQPTLNCLLSAVSDQTKVSEEHL WESLQTILPDSQLSNEETNTLGLSTEHLTALAHLYNFQATVYSDRGPILFGPSDTIKRIDITHTTGPPSHFSPGKRLLGS ; ;MHHHHHHGSSQLLPAPLTNDPTAIGPVLPFEELHPRRYPENTATFLTRLRSLPSNHLPQPTLNCLLSAVSDQTKVSEEHL WESLQTILPDSQLSNEETNTLGLSTEHLTALAHLYNFQATVYSDRGPILFGPSDTIKRIDITHTTGPPSHFSPGKRLLGS ; A ? 2 'polypeptide(L)' no no ;SLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTQL IERLGLRR ; ;SLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTQL IERLGLRR ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 GLY n 1 9 SER n 1 10 SER n 1 11 GLN n 1 12 LEU n 1 13 LEU n 1 14 PRO n 1 15 ALA n 1 16 PRO n 1 17 LEU n 1 18 THR n 1 19 ASN n 1 20 ASP n 1 21 PRO n 1 22 THR n 1 23 ALA n 1 24 ILE n 1 25 GLY n 1 26 PRO n 1 27 VAL n 1 28 LEU n 1 29 PRO n 1 30 PHE n 1 31 GLU n 1 32 GLU n 1 33 LEU n 1 34 HIS n 1 35 PRO n 1 36 ARG n 1 37 ARG n 1 38 TYR n 1 39 PRO n 1 40 GLU n 1 41 ASN n 1 42 THR n 1 43 ALA n 1 44 THR n 1 45 PHE n 1 46 LEU n 1 47 THR n 1 48 ARG n 1 49 LEU n 1 50 ARG n 1 51 SER n 1 52 LEU n 1 53 PRO n 1 54 SER n 1 55 ASN n 1 56 HIS n 1 57 LEU n 1 58 PRO n 1 59 GLN n 1 60 PRO n 1 61 THR n 1 62 LEU n 1 63 ASN n 1 64 CYS n 1 65 LEU n 1 66 LEU n 1 67 SER n 1 68 ALA n 1 69 VAL n 1 70 SER n 1 71 ASP n 1 72 GLN n 1 73 THR n 1 74 LYS n 1 75 VAL n 1 76 SER n 1 77 GLU n 1 78 GLU n 1 79 HIS n 1 80 LEU n 1 81 TRP n 1 82 GLU n 1 83 SER n 1 84 LEU n 1 85 GLN n 1 86 THR n 1 87 ILE n 1 88 LEU n 1 89 PRO n 1 90 ASP n 1 91 SER n 1 92 GLN n 1 93 LEU n 1 94 SER n 1 95 ASN n 1 96 GLU n 1 97 GLU n 1 98 THR n 1 99 ASN n 1 100 THR n 1 101 LEU n 1 102 GLY n 1 103 LEU n 1 104 SER n 1 105 THR n 1 106 GLU n 1 107 HIS n 1 108 LEU n 1 109 THR n 1 110 ALA n 1 111 LEU n 1 112 ALA n 1 113 HIS n 1 114 LEU n 1 115 TYR n 1 116 ASN n 1 117 PHE n 1 118 GLN n 1 119 ALA n 1 120 THR n 1 121 VAL n 1 122 TYR n 1 123 SER n 1 124 ASP n 1 125 ARG n 1 126 GLY n 1 127 PRO n 1 128 ILE n 1 129 LEU n 1 130 PHE n 1 131 GLY n 1 132 PRO n 1 133 SER n 1 134 ASP n 1 135 THR n 1 136 ILE n 1 137 LYS n 1 138 ARG n 1 139 ILE n 1 140 ASP n 1 141 ILE n 1 142 THR n 1 143 HIS n 1 144 THR n 1 145 THR n 1 146 GLY n 1 147 PRO n 1 148 PRO n 1 149 SER n 1 150 HIS n 1 151 PHE n 1 152 SER n 1 153 PRO n 1 154 GLY n 1 155 LYS n 1 156 ARG n 1 157 LEU n 1 158 LEU n 1 159 GLY n 1 160 SER n 2 1 SER n 2 2 LEU n 2 3 SER n 2 4 THR n 2 5 GLU n 2 6 ALA n 2 7 THR n 2 8 ALA n 2 9 LYS n 2 10 ILE n 2 11 VAL n 2 12 SER n 2 13 GLU n 2 14 PHE n 2 15 GLY n 2 16 ARG n 2 17 ASP n 2 18 ALA n 2 19 ASN n 2 20 ASP n 2 21 THR n 2 22 GLY n 2 23 SER n 2 24 THR n 2 25 GLU n 2 26 VAL n 2 27 GLN n 2 28 VAL n 2 29 ALA n 2 30 LEU n 2 31 LEU n 2 32 THR n 2 33 ALA n 2 34 GLN n 2 35 ILE n 2 36 ASN n 2 37 HIS n 2 38 LEU n 2 39 GLN n 2 40 GLY n 2 41 HIS n 2 42 PHE n 2 43 ALA n 2 44 GLU n 2 45 HIS n 2 46 LYS n 2 47 LYS n 2 48 ASP n 2 49 HIS n 2 50 HIS n 2 51 SER n 2 52 ARG n 2 53 ARG n 2 54 GLY n 2 55 LEU n 2 56 LEU n 2 57 ARG n 2 58 MET n 2 59 VAL n 2 60 SER n 2 61 GLN n 2 62 ARG n 2 63 ARG n 2 64 LYS n 2 65 LEU n 2 66 LEU n 2 67 ASP n 2 68 TYR n 2 69 LEU n 2 70 LYS n 2 71 ARG n 2 72 LYS n 2 73 ASP n 2 74 VAL n 2 75 ALA n 2 76 ARG n 2 77 TYR n 2 78 THR n 2 79 GLN n 2 80 LEU n 2 81 ILE n 2 82 GLU n 2 83 ARG n 2 84 LEU n 2 85 GLY n 2 86 LEU n 2 87 ARG n 2 88 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'TURNIP YELLOW MOSAIC VIRUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 12154 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector 'PGEX MODIFIED' _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _entity_src_nat.entity_id 2 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'ESCHERICHIA COLI' _entity_src_nat.pdbx_ncbi_taxonomy_id 469008 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain 'BL21(DE3)' _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP POLR_TYMV 1 ? ? P10358 ? 2 UNP E8Y371_ECOKO 2 ? ? E8Y371 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4A5U A 9 ? 160 ? P10358 728 ? 879 ? 728 879 2 2 4A5U B 1 ? 88 ? E8Y371 2 ? 89 ? 1 88 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4A5U MET A 1 ? UNP P10358 ? ? 'expression tag' 720 1 1 4A5U HIS A 2 ? UNP P10358 ? ? 'expression tag' 721 2 1 4A5U HIS A 3 ? UNP P10358 ? ? 'expression tag' 722 3 1 4A5U HIS A 4 ? UNP P10358 ? ? 'expression tag' 723 4 1 4A5U HIS A 5 ? UNP P10358 ? ? 'expression tag' 724 5 1 4A5U HIS A 6 ? UNP P10358 ? ? 'expression tag' 725 6 1 4A5U HIS A 7 ? UNP P10358 ? ? 'expression tag' 726 7 1 4A5U GLY A 8 ? UNP P10358 ? ? 'expression tag' 727 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4A5U _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.99 _exptl_crystal.density_percent_sol 69 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1M HEPES PH 7.5 2.5 M AMMONIUM FORMATE' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2009-12-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8856 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SOLEIL BEAMLINE PROXIMA 1' _diffrn_source.pdbx_synchrotron_site SOLEIL _diffrn_source.pdbx_synchrotron_beamline 'PROXIMA 1' _diffrn_source.pdbx_wavelength 0.8856 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4A5U _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 39.50 _reflns.d_resolution_high 2.00 _reflns.number_obs 29613 _reflns.number_all ? _reflns.percent_possible_obs 99.0 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.80 _reflns.B_iso_Wilson_estimate 27.24 _reflns.pdbx_redundancy 3.72 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.05 _reflns_shell.percent_possible_all 99.5 _reflns_shell.Rmerge_I_obs 0.06 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.20 _reflns_shell.pdbx_redundancy 3.74 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4A5U _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 29610 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 39.029 _refine.ls_d_res_high 2.000 _refine.ls_percent_reflns_obs 99.04 _refine.ls_R_factor_obs 0.1704 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1678 _refine.ls_R_factor_R_free 0.2011 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.7 _refine.ls_number_reflns_R_free 2275 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 33.2 _refine.aniso_B[1][1] 2.7292 _refine.aniso_B[2][2] 2.7292 _refine.aniso_B[3][3] -1.6959 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.367 _refine.solvent_model_param_bsol 58.886 _refine.pdbx_solvent_vdw_probe_radii 1.00 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.73 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct MIRAS _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.56 _refine.pdbx_overall_phase_error 18.23 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1797 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 194 _refine_hist.number_atoms_total 1991 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 39.029 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.007 ? ? 1879 'X-RAY DIFFRACTION' ? f_angle_d 1.050 ? ? 2558 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 13.509 ? ? 722 'X-RAY DIFFRACTION' ? f_chiral_restr 0.069 ? ? 297 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 335 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 2.0000 2.0715 2719 0.2224 99.00 0.2769 . . 220 . . 'X-RAY DIFFRACTION' . 2.0715 2.1544 2691 0.2001 99.00 0.2402 . . 223 . . 'X-RAY DIFFRACTION' . 2.1544 2.2525 2720 0.1890 99.00 0.2469 . . 220 . . 'X-RAY DIFFRACTION' . 2.2525 2.3712 2720 0.1685 99.00 0.1979 . . 241 . . 'X-RAY DIFFRACTION' . 2.3712 2.5197 2710 0.1636 99.00 0.2222 . . 222 . . 'X-RAY DIFFRACTION' . 2.5197 2.7142 2747 0.1676 100.00 0.2076 . . 228 . . 'X-RAY DIFFRACTION' . 2.7142 2.9873 2748 0.1754 99.00 0.2060 . . 234 . . 'X-RAY DIFFRACTION' . 2.9873 3.4194 2732 0.1704 99.00 0.2122 . . 223 . . 'X-RAY DIFFRACTION' . 3.4194 4.3072 2746 0.1480 98.00 0.1770 . . 228 . . 'X-RAY DIFFRACTION' . 4.3072 39.0363 2802 0.1609 98.00 0.1773 . . 236 . . # _struct.entry_id 4A5U _struct.title 'Turnip yellow mosaic virus proteinase and Escherichia coli 30S ribosomal S15' _struct.pdbx_descriptor 'RNA REPLICASE POLYPROTEIN (E.C.2.7.7.48), 30S RIBOSOMAL PROTEIN S15' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4A5U _struct_keywords.pdbx_keywords 'TRANSFERASE/RNA BINDING PROTEIN' _struct_keywords.text 'TRANSFERASE-RNA BINDING PROTEIN COMPLEX, CYSTEINE PROTEINASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 14 ? ASN A 19 ? PRO A 733 ASN A 738 1 ? 6 HELX_P HELX_P2 2 PHE A 30 ? HIS A 34 ? PHE A 749 HIS A 753 1 ? 5 HELX_P HELX_P3 3 ASN A 63 ? LYS A 74 ? ASN A 782 LYS A 793 1 ? 12 HELX_P HELX_P4 4 SER A 76 ? GLN A 85 ? SER A 795 GLN A 804 1 ? 10 HELX_P HELX_P5 5 PRO A 89 ? LEU A 93 ? PRO A 808 LEU A 812 5 ? 5 HELX_P HELX_P6 6 ASN A 95 ? GLY A 102 ? ASN A 814 GLY A 821 1 ? 8 HELX_P HELX_P7 7 SER A 104 ? ASN A 116 ? SER A 823 ASN A 835 1 ? 13 HELX_P HELX_P8 8 SER B 3 ? GLY B 15 ? SER B 3 GLY B 15 1 ? 13 HELX_P HELX_P9 9 SER B 23 ? PHE B 42 ? SER B 23 PHE B 42 1 ? 20 HELX_P HELX_P10 10 SER B 51 ? ASP B 73 ? SER B 51 ASP B 73 1 ? 23 HELX_P HELX_P11 11 ASP B 73 ? LEU B 84 ? ASP B 73 LEU B 84 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLY 146 A . ? GLY 865 A PRO 147 A ? PRO 866 A 1 8.13 2 PRO 147 A . ? PRO 866 A PRO 148 A ? PRO 867 A 1 -2.50 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? AB ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? parallel AB 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ALA A 23 ? PRO A 29 ? ALA A 742 PRO A 748 AA 2 LEU A 46 ? ARG A 50 ? LEU A 765 ARG A 769 AB 1 GLY A 126 ? PHE A 130 ? GLY A 845 PHE A 849 AB 2 PHE A 117 ? SER A 123 ? PHE A 836 SER A 842 AB 3 LYS A 137 ? THR A 144 ? LYS A 856 THR A 863 AB 4 HIS A 150 ? PRO A 153 ? HIS A 869 PRO A 872 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N LEU A 28 ? N LEU A 747 O THR A 47 ? O THR A 766 AB 1 2 N PHE A 130 ? N PHE A 849 O ALA A 119 ? O ALA A 838 AB 2 3 N GLN A 118 ? N GLN A 837 O LYS A 137 ? O LYS A 856 AB 3 4 N THR A 144 ? N THR A 863 O HIS A 150 ? O HIS A 869 # _database_PDB_matrix.entry_id 4A5U _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4A5U _atom_sites.fract_transf_matrix[1][1] 0.007396 _atom_sites.fract_transf_matrix[1][2] 0.004270 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008541 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023866 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 720 ? ? ? A . n A 1 2 HIS 2 721 ? ? ? A . n A 1 3 HIS 3 722 ? ? ? A . n A 1 4 HIS 4 723 ? ? ? A . n A 1 5 HIS 5 724 ? ? ? A . n A 1 6 HIS 6 725 ? ? ? A . n A 1 7 HIS 7 726 ? ? ? A . n A 1 8 GLY 8 727 ? ? ? A . n A 1 9 SER 9 728 ? ? ? A . n A 1 10 SER 10 729 ? ? ? A . n A 1 11 GLN 11 730 ? ? ? A . n A 1 12 LEU 12 731 ? ? ? A . n A 1 13 LEU 13 732 732 LEU LEU A . n A 1 14 PRO 14 733 733 PRO PRO A . n A 1 15 ALA 15 734 734 ALA ALA A . n A 1 16 PRO 16 735 735 PRO PRO A . n A 1 17 LEU 17 736 736 LEU LEU A . n A 1 18 THR 18 737 737 THR THR A . n A 1 19 ASN 19 738 738 ASN ASN A . n A 1 20 ASP 20 739 739 ASP ASP A . n A 1 21 PRO 21 740 740 PRO PRO A . n A 1 22 THR 22 741 741 THR THR A . n A 1 23 ALA 23 742 742 ALA ALA A . n A 1 24 ILE 24 743 743 ILE ILE A . n A 1 25 GLY 25 744 744 GLY GLY A . n A 1 26 PRO 26 745 745 PRO PRO A . n A 1 27 VAL 27 746 746 VAL VAL A . n A 1 28 LEU 28 747 747 LEU LEU A . n A 1 29 PRO 29 748 748 PRO PRO A . n A 1 30 PHE 30 749 749 PHE PHE A . n A 1 31 GLU 31 750 750 GLU GLU A . n A 1 32 GLU 32 751 751 GLU GLU A . n A 1 33 LEU 33 752 752 LEU LEU A . n A 1 34 HIS 34 753 753 HIS HIS A . n A 1 35 PRO 35 754 754 PRO PRO A . n A 1 36 ARG 36 755 755 ARG ARG A . n A 1 37 ARG 37 756 756 ARG ARG A . n A 1 38 TYR 38 757 757 TYR TYR A . n A 1 39 PRO 39 758 758 PRO PRO A . n A 1 40 GLU 40 759 759 GLU GLU A . n A 1 41 ASN 41 760 760 ASN ASN A . n A 1 42 THR 42 761 761 THR THR A . n A 1 43 ALA 43 762 762 ALA ALA A . n A 1 44 THR 44 763 763 THR THR A . n A 1 45 PHE 45 764 764 PHE PHE A . n A 1 46 LEU 46 765 765 LEU LEU A . n A 1 47 THR 47 766 766 THR THR A . n A 1 48 ARG 48 767 767 ARG ARG A . n A 1 49 LEU 49 768 768 LEU LEU A . n A 1 50 ARG 50 769 769 ARG ARG A . n A 1 51 SER 51 770 770 SER SER A . n A 1 52 LEU 52 771 771 LEU LEU A . n A 1 53 PRO 53 772 772 PRO PRO A . n A 1 54 SER 54 773 773 SER SER A . n A 1 55 ASN 55 774 774 ASN ASN A . n A 1 56 HIS 56 775 775 HIS HIS A . n A 1 57 LEU 57 776 776 LEU LEU A . n A 1 58 PRO 58 777 777 PRO PRO A . n A 1 59 GLN 59 778 778 GLN GLN A . n A 1 60 PRO 60 779 779 PRO PRO A . n A 1 61 THR 61 780 780 THR THR A . n A 1 62 LEU 62 781 781 LEU LEU A . n A 1 63 ASN 63 782 782 ASN ASN A . n A 1 64 CYS 64 783 783 CYS CYS A . n A 1 65 LEU 65 784 784 LEU LEU A . n A 1 66 LEU 66 785 785 LEU LEU A . n A 1 67 SER 67 786 786 SER SER A . n A 1 68 ALA 68 787 787 ALA ALA A . n A 1 69 VAL 69 788 788 VAL VAL A . n A 1 70 SER 70 789 789 SER SER A . n A 1 71 ASP 71 790 790 ASP ASP A . n A 1 72 GLN 72 791 791 GLN GLN A . n A 1 73 THR 73 792 792 THR THR A . n A 1 74 LYS 74 793 793 LYS LYS A . n A 1 75 VAL 75 794 794 VAL VAL A . n A 1 76 SER 76 795 795 SER SER A . n A 1 77 GLU 77 796 796 GLU GLU A . n A 1 78 GLU 78 797 797 GLU GLU A . n A 1 79 HIS 79 798 798 HIS HIS A . n A 1 80 LEU 80 799 799 LEU LEU A . n A 1 81 TRP 81 800 800 TRP TRP A . n A 1 82 GLU 82 801 801 GLU GLU A . n A 1 83 SER 83 802 802 SER SER A . n A 1 84 LEU 84 803 803 LEU LEU A . n A 1 85 GLN 85 804 804 GLN GLN A . n A 1 86 THR 86 805 805 THR THR A . n A 1 87 ILE 87 806 806 ILE ILE A . n A 1 88 LEU 88 807 807 LEU LEU A . n A 1 89 PRO 89 808 808 PRO PRO A . n A 1 90 ASP 90 809 809 ASP ASP A . n A 1 91 SER 91 810 810 SER SER A . n A 1 92 GLN 92 811 811 GLN GLN A . n A 1 93 LEU 93 812 812 LEU LEU A . n A 1 94 SER 94 813 813 SER SER A . n A 1 95 ASN 95 814 814 ASN ASN A . n A 1 96 GLU 96 815 815 GLU GLU A . n A 1 97 GLU 97 816 816 GLU GLU A . n A 1 98 THR 98 817 817 THR THR A . n A 1 99 ASN 99 818 818 ASN ASN A . n A 1 100 THR 100 819 819 THR THR A . n A 1 101 LEU 101 820 820 LEU LEU A . n A 1 102 GLY 102 821 821 GLY GLY A . n A 1 103 LEU 103 822 822 LEU LEU A . n A 1 104 SER 104 823 823 SER SER A . n A 1 105 THR 105 824 824 THR THR A . n A 1 106 GLU 106 825 825 GLU GLU A . n A 1 107 HIS 107 826 826 HIS HIS A . n A 1 108 LEU 108 827 827 LEU LEU A . n A 1 109 THR 109 828 828 THR THR A . n A 1 110 ALA 110 829 829 ALA ALA A . n A 1 111 LEU 111 830 830 LEU LEU A . n A 1 112 ALA 112 831 831 ALA ALA A . n A 1 113 HIS 113 832 832 HIS HIS A . n A 1 114 LEU 114 833 833 LEU LEU A . n A 1 115 TYR 115 834 834 TYR TYR A . n A 1 116 ASN 116 835 835 ASN ASN A . n A 1 117 PHE 117 836 836 PHE PHE A . n A 1 118 GLN 118 837 837 GLN GLN A . n A 1 119 ALA 119 838 838 ALA ALA A . n A 1 120 THR 120 839 839 THR THR A . n A 1 121 VAL 121 840 840 VAL VAL A . n A 1 122 TYR 122 841 841 TYR TYR A . n A 1 123 SER 123 842 842 SER SER A . n A 1 124 ASP 124 843 843 ASP ASP A . n A 1 125 ARG 125 844 844 ARG ARG A . n A 1 126 GLY 126 845 845 GLY GLY A . n A 1 127 PRO 127 846 846 PRO PRO A . n A 1 128 ILE 128 847 847 ILE ILE A . n A 1 129 LEU 129 848 848 LEU LEU A . n A 1 130 PHE 130 849 849 PHE PHE A . n A 1 131 GLY 131 850 850 GLY GLY A . n A 1 132 PRO 132 851 851 PRO PRO A . n A 1 133 SER 133 852 852 SER SER A . n A 1 134 ASP 134 853 853 ASP ASP A . n A 1 135 THR 135 854 854 THR THR A . n A 1 136 ILE 136 855 855 ILE ILE A . n A 1 137 LYS 137 856 856 LYS LYS A . n A 1 138 ARG 138 857 857 ARG ARG A . n A 1 139 ILE 139 858 858 ILE ILE A . n A 1 140 ASP 140 859 859 ASP ASP A . n A 1 141 ILE 141 860 860 ILE ILE A . n A 1 142 THR 142 861 861 THR THR A . n A 1 143 HIS 143 862 862 HIS HIS A . n A 1 144 THR 144 863 863 THR THR A . n A 1 145 THR 145 864 864 THR THR A . n A 1 146 GLY 146 865 865 GLY GLY A . n A 1 147 PRO 147 866 866 PRO PRO A . n A 1 148 PRO 148 867 867 PRO PRO A . n A 1 149 SER 149 868 868 SER SER A . n A 1 150 HIS 150 869 869 HIS HIS A . n A 1 151 PHE 151 870 870 PHE PHE A . n A 1 152 SER 152 871 871 SER SER A . n A 1 153 PRO 153 872 872 PRO PRO A . n A 1 154 GLY 154 873 873 GLY GLY A . n A 1 155 LYS 155 874 874 LYS LYS A . n A 1 156 ARG 156 875 875 ARG ARG A . n A 1 157 LEU 157 876 876 LEU LEU A . n A 1 158 LEU 158 877 877 LEU LEU A . n A 1 159 GLY 159 878 878 GLY GLY A . n A 1 160 SER 160 879 879 SER SER A . n B 2 1 SER 1 1 1 SER SER B . n B 2 2 LEU 2 2 2 LEU LEU B . n B 2 3 SER 3 3 3 SER SER B . n B 2 4 THR 4 4 4 THR THR B . n B 2 5 GLU 5 5 5 GLU GLU B . n B 2 6 ALA 6 6 6 ALA ALA B . n B 2 7 THR 7 7 7 THR THR B . n B 2 8 ALA 8 8 8 ALA ALA B . n B 2 9 LYS 9 9 9 LYS LYS B . n B 2 10 ILE 10 10 10 ILE ILE B . n B 2 11 VAL 11 11 11 VAL VAL B . n B 2 12 SER 12 12 12 SER SER B . n B 2 13 GLU 13 13 13 GLU GLU B . n B 2 14 PHE 14 14 14 PHE PHE B . n B 2 15 GLY 15 15 15 GLY GLY B . n B 2 16 ARG 16 16 16 ARG ARG B . n B 2 17 ASP 17 17 17 ASP ASP B . n B 2 18 ALA 18 18 18 ALA ALA B . n B 2 19 ASN 19 19 19 ASN ASN B . n B 2 20 ASP 20 20 20 ASP ASP B . n B 2 21 THR 21 21 21 THR THR B . n B 2 22 GLY 22 22 22 GLY GLY B . n B 2 23 SER 23 23 23 SER SER B . n B 2 24 THR 24 24 24 THR THR B . n B 2 25 GLU 25 25 25 GLU GLU B . n B 2 26 VAL 26 26 26 VAL VAL B . n B 2 27 GLN 27 27 27 GLN GLN B . n B 2 28 VAL 28 28 28 VAL VAL B . n B 2 29 ALA 29 29 29 ALA ALA B . n B 2 30 LEU 30 30 30 LEU LEU B . n B 2 31 LEU 31 31 31 LEU LEU B . n B 2 32 THR 32 32 32 THR THR B . n B 2 33 ALA 33 33 33 ALA ALA B . n B 2 34 GLN 34 34 34 GLN GLN B . n B 2 35 ILE 35 35 35 ILE ILE B . n B 2 36 ASN 36 36 36 ASN ASN B . n B 2 37 HIS 37 37 37 HIS HIS B . n B 2 38 LEU 38 38 38 LEU LEU B . n B 2 39 GLN 39 39 39 GLN GLN B . n B 2 40 GLY 40 40 40 GLY GLY B . n B 2 41 HIS 41 41 41 HIS HIS B . n B 2 42 PHE 42 42 42 PHE PHE B . n B 2 43 ALA 43 43 ? ? ? B . n B 2 44 GLU 44 44 ? ? ? B . n B 2 45 HIS 45 45 ? ? ? B . n B 2 46 LYS 46 46 ? ? ? B . n B 2 47 LYS 47 47 ? ? ? B . n B 2 48 ASP 48 48 ? ? ? B . n B 2 49 HIS 49 49 ? ? ? B . n B 2 50 HIS 50 50 ? ? ? B . n B 2 51 SER 51 51 51 SER SER B . n B 2 52 ARG 52 52 52 ARG ARG B . n B 2 53 ARG 53 53 53 ARG ARG B . n B 2 54 GLY 54 54 54 GLY GLY B . n B 2 55 LEU 55 55 55 LEU LEU B . n B 2 56 LEU 56 56 56 LEU LEU B . n B 2 57 ARG 57 57 57 ARG ARG B . n B 2 58 MET 58 58 58 MET MET B . n B 2 59 VAL 59 59 59 VAL VAL B . n B 2 60 SER 60 60 60 SER SER B . n B 2 61 GLN 61 61 61 GLN GLN B . n B 2 62 ARG 62 62 62 ARG ARG B . n B 2 63 ARG 63 63 63 ARG ARG B . n B 2 64 LYS 64 64 64 LYS LYS B . n B 2 65 LEU 65 65 65 LEU LEU B . n B 2 66 LEU 66 66 66 LEU LEU B . n B 2 67 ASP 67 67 67 ASP ASP B . n B 2 68 TYR 68 68 68 TYR TYR B . n B 2 69 LEU 69 69 69 LEU LEU B . n B 2 70 LYS 70 70 70 LYS LYS B . n B 2 71 ARG 71 71 71 ARG ARG B . n B 2 72 LYS 72 72 72 LYS LYS B . n B 2 73 ASP 73 73 73 ASP ASP B . n B 2 74 VAL 74 74 74 VAL VAL B . n B 2 75 ALA 75 75 75 ALA ALA B . n B 2 76 ARG 76 76 76 ARG ARG B . n B 2 77 TYR 77 77 77 TYR TYR B . n B 2 78 THR 78 78 78 THR THR B . n B 2 79 GLN 79 79 79 GLN GLN B . n B 2 80 LEU 80 80 80 LEU LEU B . n B 2 81 ILE 81 81 81 ILE ILE B . n B 2 82 GLU 82 82 82 GLU GLU B . n B 2 83 ARG 83 83 83 ARG ARG B . n B 2 84 LEU 84 84 84 LEU LEU B . n B 2 85 GLY 85 85 85 GLY GLY B . n B 2 86 LEU 86 86 86 LEU LEU B . n B 2 87 ARG 87 87 87 ARG ARG B . n B 2 88 ARG 88 88 88 ARG ARG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 2001 2001 HOH HOH A . C 3 HOH 2 2002 2002 HOH HOH A . C 3 HOH 3 2003 2003 HOH HOH A . C 3 HOH 4 2004 2004 HOH HOH A . C 3 HOH 5 2005 2005 HOH HOH A . C 3 HOH 6 2006 2006 HOH HOH A . C 3 HOH 7 2007 2007 HOH HOH A . C 3 HOH 8 2008 2008 HOH HOH A . C 3 HOH 9 2009 2009 HOH HOH A . C 3 HOH 10 2010 2010 HOH HOH A . C 3 HOH 11 2011 2011 HOH HOH A . C 3 HOH 12 2012 2012 HOH HOH A . C 3 HOH 13 2013 2013 HOH HOH A . C 3 HOH 14 2014 2014 HOH HOH A . C 3 HOH 15 2015 2015 HOH HOH A . C 3 HOH 16 2016 2016 HOH HOH A . C 3 HOH 17 2017 2017 HOH HOH A . C 3 HOH 18 2018 2018 HOH HOH A . C 3 HOH 19 2019 2019 HOH HOH A . C 3 HOH 20 2020 2020 HOH HOH A . C 3 HOH 21 2021 2021 HOH HOH A . C 3 HOH 22 2022 2022 HOH HOH A . C 3 HOH 23 2023 2023 HOH HOH A . C 3 HOH 24 2024 2024 HOH HOH A . C 3 HOH 25 2025 2025 HOH HOH A . C 3 HOH 26 2026 2026 HOH HOH A . C 3 HOH 27 2027 2027 HOH HOH A . C 3 HOH 28 2028 2028 HOH HOH A . C 3 HOH 29 2029 2029 HOH HOH A . C 3 HOH 30 2030 2030 HOH HOH A . C 3 HOH 31 2031 2031 HOH HOH A . C 3 HOH 32 2032 2032 HOH HOH A . C 3 HOH 33 2033 2033 HOH HOH A . C 3 HOH 34 2034 2034 HOH HOH A . C 3 HOH 35 2035 2035 HOH HOH A . C 3 HOH 36 2036 2036 HOH HOH A . C 3 HOH 37 2037 2037 HOH HOH A . C 3 HOH 38 2038 2038 HOH HOH A . C 3 HOH 39 2039 2039 HOH HOH A . C 3 HOH 40 2040 2040 HOH HOH A . C 3 HOH 41 2041 2041 HOH HOH A . C 3 HOH 42 2042 2042 HOH HOH A . C 3 HOH 43 2043 2043 HOH HOH A . C 3 HOH 44 2044 2044 HOH HOH A . C 3 HOH 45 2045 2045 HOH HOH A . C 3 HOH 46 2046 2046 HOH HOH A . C 3 HOH 47 2047 2047 HOH HOH A . C 3 HOH 48 2048 2048 HOH HOH A . C 3 HOH 49 2049 2049 HOH HOH A . C 3 HOH 50 2050 2050 HOH HOH A . C 3 HOH 51 2051 2051 HOH HOH A . C 3 HOH 52 2052 2052 HOH HOH A . C 3 HOH 53 2053 2053 HOH HOH A . C 3 HOH 54 2054 2054 HOH HOH A . C 3 HOH 55 2055 2055 HOH HOH A . C 3 HOH 56 2056 2056 HOH HOH A . C 3 HOH 57 2057 2057 HOH HOH A . C 3 HOH 58 2058 2058 HOH HOH A . C 3 HOH 59 2059 2059 HOH HOH A . C 3 HOH 60 2060 2060 HOH HOH A . C 3 HOH 61 2061 2061 HOH HOH A . C 3 HOH 62 2062 2062 HOH HOH A . C 3 HOH 63 2063 2063 HOH HOH A . C 3 HOH 64 2064 2064 HOH HOH A . C 3 HOH 65 2065 2065 HOH HOH A . C 3 HOH 66 2066 2066 HOH HOH A . C 3 HOH 67 2067 2067 HOH HOH A . C 3 HOH 68 2068 2068 HOH HOH A . C 3 HOH 69 2069 2069 HOH HOH A . C 3 HOH 70 2070 2070 HOH HOH A . C 3 HOH 71 2071 2071 HOH HOH A . C 3 HOH 72 2072 2072 HOH HOH A . C 3 HOH 73 2073 2073 HOH HOH A . C 3 HOH 74 2074 2074 HOH HOH A . C 3 HOH 75 2075 2075 HOH HOH A . C 3 HOH 76 2076 2076 HOH HOH A . C 3 HOH 77 2077 2077 HOH HOH A . C 3 HOH 78 2078 2078 HOH HOH A . C 3 HOH 79 2079 2079 HOH HOH A . C 3 HOH 80 2080 2080 HOH HOH A . C 3 HOH 81 2081 2081 HOH HOH A . C 3 HOH 82 2082 2082 HOH HOH A . C 3 HOH 83 2083 2083 HOH HOH A . C 3 HOH 84 2084 2084 HOH HOH A . C 3 HOH 85 2085 2085 HOH HOH A . C 3 HOH 86 2086 2086 HOH HOH A . C 3 HOH 87 2087 2087 HOH HOH A . C 3 HOH 88 2088 2088 HOH HOH A . C 3 HOH 89 2089 2089 HOH HOH A . C 3 HOH 90 2090 2090 HOH HOH A . C 3 HOH 91 2091 2091 HOH HOH A . C 3 HOH 92 2092 2092 HOH HOH A . C 3 HOH 93 2093 2093 HOH HOH A . C 3 HOH 94 2094 2094 HOH HOH A . C 3 HOH 95 2095 2095 HOH HOH A . C 3 HOH 96 2096 2096 HOH HOH A . C 3 HOH 97 2097 2097 HOH HOH A . C 3 HOH 98 2098 2098 HOH HOH A . C 3 HOH 99 2099 2099 HOH HOH A . C 3 HOH 100 2100 2100 HOH HOH A . C 3 HOH 101 2101 2101 HOH HOH A . C 3 HOH 102 2102 2102 HOH HOH A . C 3 HOH 103 2103 2103 HOH HOH A . C 3 HOH 104 2104 2104 HOH HOH A . C 3 HOH 105 2105 2105 HOH HOH A . C 3 HOH 106 2106 2106 HOH HOH A . C 3 HOH 107 2107 2107 HOH HOH A . C 3 HOH 108 2108 2108 HOH HOH A . C 3 HOH 109 2109 2109 HOH HOH A . C 3 HOH 110 2110 2110 HOH HOH A . C 3 HOH 111 2111 2111 HOH HOH A . C 3 HOH 112 2112 2112 HOH HOH A . C 3 HOH 113 2113 2113 HOH HOH A . C 3 HOH 114 2114 2114 HOH HOH A . C 3 HOH 115 2115 2115 HOH HOH A . C 3 HOH 116 2116 2116 HOH HOH A . C 3 HOH 117 2117 2117 HOH HOH A . C 3 HOH 118 2118 2118 HOH HOH A . C 3 HOH 119 2119 2119 HOH HOH A . C 3 HOH 120 2120 2120 HOH HOH A . C 3 HOH 121 2121 2121 HOH HOH A . C 3 HOH 122 2122 2122 HOH HOH A . C 3 HOH 123 2123 2123 HOH HOH A . C 3 HOH 124 2124 2124 HOH HOH A . C 3 HOH 125 2125 2125 HOH HOH A . C 3 HOH 126 2126 2126 HOH HOH A . C 3 HOH 127 2127 2127 HOH HOH A . C 3 HOH 128 2128 2128 HOH HOH A . C 3 HOH 129 2129 2129 HOH HOH A . C 3 HOH 130 2130 2130 HOH HOH A . C 3 HOH 131 2131 2131 HOH HOH A . C 3 HOH 132 2132 2132 HOH HOH A . C 3 HOH 133 2133 2133 HOH HOH A . C 3 HOH 134 2134 2134 HOH HOH A . C 3 HOH 135 2135 2135 HOH HOH A . C 3 HOH 136 2136 2136 HOH HOH A . C 3 HOH 137 2137 2137 HOH HOH A . C 3 HOH 138 2138 2138 HOH HOH A . C 3 HOH 139 2139 2139 HOH HOH A . C 3 HOH 140 2140 2140 HOH HOH A . C 3 HOH 141 2141 2141 HOH HOH A . C 3 HOH 142 2142 2142 HOH HOH A . C 3 HOH 143 2143 2143 HOH HOH A . C 3 HOH 144 2144 2144 HOH HOH A . C 3 HOH 145 2145 2145 HOH HOH A . C 3 HOH 146 2146 2146 HOH HOH A . C 3 HOH 147 2147 2147 HOH HOH A . C 3 HOH 148 2148 2148 HOH HOH A . C 3 HOH 149 2149 2149 HOH HOH A . C 3 HOH 150 2150 2150 HOH HOH A . C 3 HOH 151 2151 2151 HOH HOH A . C 3 HOH 152 2152 2152 HOH HOH A . C 3 HOH 153 2153 2153 HOH HOH A . C 3 HOH 154 2154 2154 HOH HOH A . C 3 HOH 155 2155 2155 HOH HOH A . D 3 HOH 1 2001 2001 HOH HOH B . D 3 HOH 2 2002 2002 HOH HOH B . D 3 HOH 3 2003 2003 HOH HOH B . D 3 HOH 4 2004 2004 HOH HOH B . D 3 HOH 5 2005 2005 HOH HOH B . D 3 HOH 6 2006 2006 HOH HOH B . D 3 HOH 7 2007 2007 HOH HOH B . D 3 HOH 8 2008 2008 HOH HOH B . D 3 HOH 9 2009 2009 HOH HOH B . D 3 HOH 10 2010 2010 HOH HOH B . D 3 HOH 11 2011 2011 HOH HOH B . D 3 HOH 12 2012 2012 HOH HOH B . D 3 HOH 13 2013 2013 HOH HOH B . D 3 HOH 14 2014 2014 HOH HOH B . D 3 HOH 15 2015 2015 HOH HOH B . D 3 HOH 16 2016 2016 HOH HOH B . D 3 HOH 17 2017 2017 HOH HOH B . D 3 HOH 18 2018 2018 HOH HOH B . D 3 HOH 19 2019 2019 HOH HOH B . D 3 HOH 20 2020 2020 HOH HOH B . D 3 HOH 21 2021 2021 HOH HOH B . D 3 HOH 22 2022 2022 HOH HOH B . D 3 HOH 23 2023 2023 HOH HOH B . D 3 HOH 24 2024 2024 HOH HOH B . D 3 HOH 25 2025 2025 HOH HOH B . D 3 HOH 26 2026 2026 HOH HOH B . D 3 HOH 27 2027 2027 HOH HOH B . D 3 HOH 28 2028 2028 HOH HOH B . D 3 HOH 29 2029 2029 HOH HOH B . D 3 HOH 30 2030 2030 HOH HOH B . D 3 HOH 31 2031 2031 HOH HOH B . D 3 HOH 32 2032 2032 HOH HOH B . D 3 HOH 33 2033 2033 HOH HOH B . D 3 HOH 34 2034 2034 HOH HOH B . D 3 HOH 35 2035 2035 HOH HOH B . D 3 HOH 36 2036 2036 HOH HOH B . D 3 HOH 37 2037 2037 HOH HOH B . D 3 HOH 38 2038 2038 HOH HOH B . D 3 HOH 39 2039 2039 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 B HOH 2026 ? D HOH . 2 1 B HOH 2037 ? D HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-11-14 2 'Structure model' 1 1 2013-11-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 11.1820 67.3192 21.2342 0.0802 0.1363 0.1055 0.0277 -0.0056 0.0073 2.0407 2.2385 1.0976 -1.5638 -0.0492 0.3822 -0.0326 -0.0052 0.1392 -0.0147 0.0294 -0.0995 -0.0228 0.0983 0.0061 'X-RAY DIFFRACTION' 2 ? refined 24.8903 43.2589 11.7642 0.2001 0.2949 0.1638 0.1137 -0.0359 -0.0657 2.1414 1.6361 1.5551 -1.1174 -0.2884 0.2217 0.1426 0.3283 -0.3821 -0.2467 -0.1535 0.2303 0.1386 -0.0361 0.0024 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? 'CHAIN A' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? 'CHAIN B' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal XDS 'data reduction' . ? 1 XSCALE 'data scaling' . ? 2 SHELXCD phasing . ? 3 autoSHARP phasing . ? 4 PHENIX refinement . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP B 73 ? ? -160.70 94.42 2 1 ARG B 87 ? ? -95.50 35.31 3 1 ARG B 87 ? ? -95.50 30.78 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 720 ? A MET 1 2 1 Y 1 A HIS 721 ? A HIS 2 3 1 Y 1 A HIS 722 ? A HIS 3 4 1 Y 1 A HIS 723 ? A HIS 4 5 1 Y 1 A HIS 724 ? A HIS 5 6 1 Y 1 A HIS 725 ? A HIS 6 7 1 Y 1 A HIS 726 ? A HIS 7 8 1 Y 1 A GLY 727 ? A GLY 8 9 1 Y 1 A SER 728 ? A SER 9 10 1 Y 1 A SER 729 ? A SER 10 11 1 Y 1 A GLN 730 ? A GLN 11 12 1 Y 1 A LEU 731 ? A LEU 12 13 1 Y 1 B ALA 43 ? B ALA 43 14 1 Y 1 B GLU 44 ? B GLU 44 15 1 Y 1 B HIS 45 ? B HIS 45 16 1 Y 1 B LYS 46 ? B LYS 46 17 1 Y 1 B LYS 47 ? B LYS 47 18 1 Y 1 B ASP 48 ? B ASP 48 19 1 Y 1 B HIS 49 ? B HIS 49 20 1 Y 1 B HIS 50 ? B HIS 50 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #