HEADER SIGNALING PROTEIN 02-NOV-11 4A6F TITLE CRYSTAL STRUCTURE OF SLM1-PH DOMAIN IN COMPLEX WITH PHOSPHOSERINE CAVEAT 4A6F SEP B 1585 HAS WRONG CHIRALITY AT ATOM CA SEP A 1584 HAS CAVEAT 2 4A6F WRONG CHIRALITY AT ATOM CA SEP A 1585 HAS WRONG CHIRALITY CAVEAT 3 4A6F AT ATOM CA SEP B 1584 HAS WRONG CHIRALITY AT ATOM CA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE-BINDING PROTEIN SLM1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SLM1-PH DOMAIN, RESIDUES 469-583; COMPND 5 SYNONYM: SYNTHETIC LETHAL WITH MSS4 PROTEIN 1, TORC2 EFFECTOR PROTEIN COMPND 6 SLM1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE-BINDING PROTEIN SLM1; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: SLM1-PH DOMAIN, RESIDUES 469-583; COMPND 12 SYNONYM: SYNTHETIC LETHAL WITH MSS4 PROTEIN 1, TORC2 EFFECTOR PROTEIN COMPND 13 SLM1; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET100-D/TOPO; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 12 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 13 ORGANISM_TAXID: 4932; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PET100-D/TOPO KEYWDS SIGNALING PROTEIN, POST TRANSLATIONAL MODIFICATION EXPDTA X-RAY DIFFRACTION AUTHOR K.ANAND,K.MAEDA,A.C.GAVIN REVDAT 4 20-DEC-23 4A6F 1 REMARK REVDAT 3 16-OCT-19 4A6F 1 REMARK REVDAT 2 06-FEB-13 4A6F 1 HETATM REVDAT 1 13-JUN-12 4A6F 0 JRNL AUTH K.ANAND,K.MAEDA,A.C.GAVIN JRNL TITL STRUCTURAL ANALYSES OF SLM1-PH DOMAIN DEMONSTRATE LIGAND JRNL TITL 2 BINDING IN THE NON-CANONICAL SITE JRNL REF PLOS ONE V. 7 36526 2012 JRNL REFN ESSN 1932-6203 JRNL PMID 22574179 JRNL DOI 10.1371/JOURNAL.PONE.0036526 REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.020 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 26460 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1058 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 54.9623 - 3.3599 0.99 3383 142 0.2019 0.2082 REMARK 3 2 3.3599 - 2.6669 1.00 3247 135 0.2182 0.2412 REMARK 3 3 2.6669 - 2.3298 1.00 3223 134 0.2240 0.2775 REMARK 3 4 2.3298 - 2.1167 1.00 3191 133 0.2086 0.2622 REMARK 3 5 2.1167 - 1.9650 1.00 3175 132 0.2117 0.2275 REMARK 3 6 1.9650 - 1.8492 1.00 3186 132 0.2166 0.2492 REMARK 3 7 1.8492 - 1.7565 0.99 3128 130 0.2272 0.2924 REMARK 3 8 1.7565 - 1.6801 0.91 2869 120 0.2393 0.2757 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 43.80 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.91940 REMARK 3 B22 (A**2) : 0.66530 REMARK 3 B33 (A**2) : -2.58470 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1803 REMARK 3 ANGLE : 1.107 2419 REMARK 3 CHIRALITY : 0.077 268 REMARK 3 PLANARITY : 0.005 290 REMARK 3 DIHEDRAL : 15.504 654 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 0.3378 -7.5060 9.3801 REMARK 3 T TENSOR REMARK 3 T11: 0.0436 T22: -0.0022 REMARK 3 T33: 0.0315 T12: 0.0015 REMARK 3 T13: 0.0083 T23: 0.0465 REMARK 3 L TENSOR REMARK 3 L11: 0.7943 L22: 0.3181 REMARK 3 L33: 0.9037 L12: -0.6195 REMARK 3 L13: -0.4113 L23: 0.8465 REMARK 3 S TENSOR REMARK 3 S11: -0.0548 S12: 0.0994 S13: 0.1018 REMARK 3 S21: 0.0532 S22: 0.0686 S23: -0.0686 REMARK 3 S31: 0.1676 S32: -0.0673 S33: -0.0149 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4A6F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1290050150. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26485 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.340 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.340 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4A5K REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.82500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.23500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.82500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.23500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2004 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2028 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 464 REMARK 465 HIS A 465 REMARK 465 THR A 531 REMARK 465 SER A 532 REMARK 465 SER A 533 REMARK 465 PRO A 534 REMARK 465 ASN A 535 REMARK 465 SER A 536 REMARK 465 THR A 537 REMARK 465 ASN A 550 REMARK 465 GLY A 551 REMARK 465 ILE A 552 REMARK 465 ILE A 553 REMARK 465 ARG A 554 REMARK 465 SER A 583 REMARK 465 ASP B 464 REMARK 465 HIS B 465 REMARK 465 PRO B 466 REMARK 465 SER B 533 REMARK 465 PRO B 534 REMARK 465 ASN B 535 REMARK 465 GLY B 551 REMARK 465 ARG B 555 REMARK 465 ARG B 556 REMARK 465 SER B 584 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 467 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 480 CD CE NZ REMARK 470 LYS B 480 CE NZ REMARK 470 GLN B 549 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE1 HIS A 557 NE1 TRP A 559 1.33 REMARK 500 CE1 HIS A 557 CE2 TRP A 559 1.73 REMARK 500 CB PHE A 467 O1P SEP A 1584 2.04 REMARK 500 NH1 ARG B 478 O2P SEP B 1584 2.09 REMARK 500 NE2 HIS A 557 CE2 TRP A 559 2.10 REMARK 500 CE1 HIS A 557 CD1 TRP A 559 2.17 REMARK 500 CB PHE A 467 O3P SEP A 1584 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O SEP B 1585 O HOH B 2002 2555 0.34 REMARK 500 C SEP B 1585 O HOH B 2002 2555 0.98 REMARK 500 CD LYS B 483 O SEP A 1585 3555 1.68 REMARK 500 OXT SEP B 1585 O HOH B 2002 2555 2.12 REMARK 500 CA SEP B 1585 O HOH B 2002 2555 2.13 REMARK 500 O3P SEP B 1584 O HOH A 2026 4545 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 468 48.32 -79.37 REMARK 500 THR A 523 -69.47 -107.17 REMARK 500 THR B 523 -85.96 -106.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2061 DISTANCE = 5.95 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1583 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SEP A 1584 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SEP A 1585 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SEP B 1584 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SEP B 1585 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1586 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4A5K RELATED DB: PDB REMARK 900 STRUCTURAL ANALYSES OF SLM1-PH DOMAIN DEMONSTRATE LIGAND BINDING IN REMARK 900 THE NON-CANONICAL SITE REMARK 900 RELATED ID: 4A6H RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SLM1-PH DOMAIN IN COMPLEX WITH INOSITOL-4- REMARK 900 PHOSPHATE REMARK 900 RELATED ID: 4A6K RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SLM1-PH DOMAIN IN COMPLEX WITH D-MYO-INOSITOL- REMARK 900 4-PHOSPHATE DBREF 4A6F A 469 583 UNP P40485 SLM1_YEAST 469 583 DBREF 4A6F B 469 584 UNP P40485 SLM1_YEAST 469 583 SEQADV 4A6F ASP A 464 UNP P40485 EXPRESSION TAG SEQADV 4A6F HIS A 465 UNP P40485 EXPRESSION TAG SEQADV 4A6F PRO A 466 UNP P40485 EXPRESSION TAG SEQADV 4A6F PHE A 467 UNP P40485 EXPRESSION TAG SEQADV 4A6F THR A 468 UNP P40485 EXPRESSION TAG SEQADV 4A6F ASP B 464 UNP P40485 EXPRESSION TAG SEQADV 4A6F HIS B 465 UNP P40485 EXPRESSION TAG SEQADV 4A6F PRO B 466 UNP P40485 EXPRESSION TAG SEQADV 4A6F PHE B 467 UNP P40485 EXPRESSION TAG SEQADV 4A6F THR B 468 UNP P40485 EXPRESSION TAG SEQADV 4A6F TYR B 560 UNP P40485 TRP 559 CONFLICT SEQRES 1 A 120 ASP HIS PRO PHE THR GLU ILE LYS SER GLY PHE LEU GLU SEQRES 2 A 120 ARG ARG SER LYS PHE LEU LYS SER TYR SER LYS GLY TYR SEQRES 3 A 120 TYR VAL LEU THR PRO ASN PHE LEU HIS GLU PHE LYS THR SEQRES 4 A 120 ALA ASP ARG LYS LYS ASP LEU VAL PRO VAL MET SER LEU SEQRES 5 A 120 ALA LEU SER GLU CYS THR VAL THR GLU HIS SER ARG LYS SEQRES 6 A 120 ASN SER THR SER SER PRO ASN SER THR GLY SER ASP ALA SEQRES 7 A 120 LYS PHE VAL LEU HIS ALA LYS GLN ASN GLY ILE ILE ARG SEQRES 8 A 120 ARG GLY HIS ASN TRP VAL PHE LYS ALA ASP SER TYR GLU SEQRES 9 A 120 SER MET MET SER TRP PHE ASP ASN LEU LYS ILE LEU THR SEQRES 10 A 120 SER THR SER SEQRES 1 B 120 ASP HIS PRO PHE THR GLU ILE LYS SER GLY PHE LEU GLU SEQRES 2 B 120 ARG ARG SER LYS PHE LEU LYS SER TYR SER LYS GLY TYR SEQRES 3 B 120 TYR VAL LEU THR PRO ASN PHE LEU HIS GLU PHE LYS THR SEQRES 4 B 120 ALA ASP ARG LYS LYS ASP LEU VAL PRO VAL MET SER LEU SEQRES 5 B 120 ALA LEU SER GLU CYS THR VAL THR GLU HIS SER ARG LYS SEQRES 6 B 120 ASN SER THR SER SER PRO ASN SER THR GLY SER ASP ALA SEQRES 7 B 120 LYS PHE VAL LEU HIS ALA LYS GLN ASN GLY ILE ILE ARG SEQRES 8 B 120 ARG GLY HIS ASN TYR VAL PHE LYS ALA ASP SER TYR GLU SEQRES 9 B 120 SER MET MET SER TRP PHE ASP ASN LEU LYS ILE LEU THR SEQRES 10 B 120 SER THR SER HET PO4 A1583 5 HET SEP A1584 13 HET SEP A1585 13 HET PO4 A1586 5 HET SEP B1584 13 HET SEP B1585 11 HETNAM PO4 PHOSPHATE ION HETNAM SEP PHOSPHOSERINE HETSYN SEP PHOSPHONOSERINE FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 SEP 4(C3 H8 N O6 P) FORMUL 9 HOH *174(H2 O) HELIX 1 1 SER A 565 LEU A 579 1 15 HELIX 2 2 SER B 566 SER B 582 1 17 SHEET 1 AA 7 MET A 513 ALA A 516 0 SHEET 2 AA 7 PHE A 496 PHE A 500 -1 O LEU A 497 N LEU A 515 SHEET 3 AA 7 SER A 484 LEU A 492 -1 O TYR A 489 N PHE A 500 SHEET 4 AA 7 LYS A 471 SER A 479 -1 O LYS A 471 N LEU A 492 SHEET 5 AA 7 ASN A 558 LYS A 562 -1 O VAL A 560 N ARG A 478 SHEET 6 AA 7 LYS A 542 ALA A 547 -1 O PHE A 543 N PHE A 561 SHEET 7 AA 7 CYS A 520 HIS A 525 -1 O THR A 521 N HIS A 546 SHEET 1 BA 7 MET B 513 ALA B 516 0 SHEET 2 BA 7 PHE B 496 PHE B 500 -1 O LEU B 497 N LEU B 515 SHEET 3 BA 7 SER B 484 LEU B 492 -1 O TYR B 489 N PHE B 500 SHEET 4 BA 7 LYS B 471 SER B 479 -1 O LYS B 471 N LEU B 492 SHEET 5 BA 7 TYR B 560 LYS B 563 -1 O VAL B 561 N ARG B 478 SHEET 6 BA 7 LYS B 542 ALA B 547 -1 O PHE B 543 N PHE B 562 SHEET 7 BA 7 CYS B 520 HIS B 525 -1 O THR B 521 N HIS B 546 CISPEP 1 PHE B 467 THR B 468 0 5.88 SITE 1 AC1 8 PHE A 474 THR A 502 ALA A 503 HOH A2035 SITE 2 AC1 8 PHE B 474 THR B 502 ALA B 503 HOH B2033 SITE 1 AC2 3 PHE A 467 ASN A 575 ILE A 578 SITE 1 AC3 5 ARG A 478 TYR A 485 LYS A 542 LYS A 562 SITE 2 AC3 5 LYS B 483 SITE 1 AC4 9 LEU A 482 LYS A 483 HOH A2026 ARG B 478 SITE 2 AC4 9 TYR B 485 SER B 536 THR B 537 LYS B 542 SITE 3 AC4 9 LYS B 563 SITE 1 AC5 6 THR A 582 HOH A2031 PHE B 467 THR B 468 SITE 2 AC5 6 GLU B 469 HOH B2002 SITE 1 AC6 9 THR A 493 ASN A 495 PHE A 496 HIS A 498 SITE 2 AC6 9 HOH A2003 THR B 493 ASN B 495 PHE B 496 SITE 3 AC6 9 HIS B 498 CRYST1 37.540 73.650 82.470 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026638 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013578 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012126 0.00000