HEADER SIGNALING PROTEIN 03-NOV-11 4A6H TITLE CRYSTAL STRUCTURE OF SLM1-PH DOMAIN IN COMPLEX WITH INOSITOL-4- TITLE 2 PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE-BINDING PROTEIN SLM1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: PH DOMAIN, RESIDUES 469-583; COMPND 5 SYNONYM: SYNTHETIC LETHAL WITH MSS4 PROTEIN 1, TORC2 EFFECTOR PROTEIN COMPND 6 SLM1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 6 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4932 KEYWDS SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.ANAND,K.MAEDA,A.C.GAVIN REVDAT 3 01-MAY-24 4A6H 1 REMARK REVDAT 2 25-MAR-15 4A6H 1 REMARK HET HETNAM FORMUL REVDAT 2 2 1 HETATM CONECT MASTER REVDAT 1 13-JUN-12 4A6H 0 JRNL AUTH K.ANAND,K.MAEDA,A.C.GAVIN JRNL TITL STRUCTURAL ANALYSES OF SLM1-PH DOMAIN DEMONSTRATE LIGAND JRNL TITL 2 BINDING IN THE NON-CANONICAL SITE JRNL REF PLOS ONE V. 7 36526 2012 JRNL REFN ESSN 1932-6203 JRNL PMID 22574179 JRNL DOI 10.1371/JOURNAL.PONE.0036526 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 73073 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1462 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.8185 - 3.1213 0.97 7409 152 0.1785 0.1807 REMARK 3 2 3.1213 - 2.4776 0.98 7398 151 0.1988 0.2758 REMARK 3 3 2.4776 - 2.1645 0.97 7222 147 0.1923 0.2453 REMARK 3 4 2.1645 - 1.9666 0.96 7240 148 0.1842 0.2237 REMARK 3 5 1.9666 - 1.8257 0.96 7206 147 0.1839 0.2300 REMARK 3 6 1.8257 - 1.7180 0.96 7150 146 0.1935 0.2086 REMARK 3 7 1.7180 - 1.6320 0.95 7080 144 0.2007 0.2439 REMARK 3 8 1.6320 - 1.5609 0.95 7063 144 0.2196 0.2420 REMARK 3 9 1.5609 - 1.5008 0.93 7003 143 0.2356 0.2696 REMARK 3 10 1.5008 - 1.4491 0.92 6840 140 0.2730 0.3213 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.42 REMARK 3 B_SOL : 67.01 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.30110 REMARK 3 B22 (A**2) : 4.93150 REMARK 3 B33 (A**2) : -3.63040 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.25160 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3664 REMARK 3 ANGLE : 1.014 4931 REMARK 3 CHIRALITY : 0.071 535 REMARK 3 PLANARITY : 0.005 591 REMARK 3 DIHEDRAL : 17.237 1367 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 0.1406 0.1989 20.7521 REMARK 3 T TENSOR REMARK 3 T11: 0.0373 T22: 0.0507 REMARK 3 T33: 0.0508 T12: 0.0006 REMARK 3 T13: 0.0012 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 0.1640 L22: 0.1996 REMARK 3 L33: 0.3884 L12: -0.0005 REMARK 3 L13: 0.0005 L23: 0.2791 REMARK 3 S TENSOR REMARK 3 S11: -0.0206 S12: 0.0017 S13: 0.0019 REMARK 3 S21: 0.0066 S22: 0.0067 S23: 0.0166 REMARK 3 S31: -0.0032 S32: 0.0511 S33: 0.0161 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4A6H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-NOV-11. REMARK 100 THE DEPOSITION ID IS D_1290050204. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.06650 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80522 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.010 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: APO STRUCTURE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.80000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 464 REMARK 465 SER A 530 REMARK 465 THR A 531 REMARK 465 SER A 532 REMARK 465 SER A 533 REMARK 465 PRO A 534 REMARK 465 ASN A 535 REMARK 465 SER A 536 REMARK 465 THR A 537 REMARK 465 GLY A 538 REMARK 465 THR A 582 REMARK 465 SER A 583 REMARK 465 ASP B 464 REMARK 465 SER B 530 REMARK 465 THR B 531 REMARK 465 SER B 532 REMARK 465 SER B 533 REMARK 465 PRO B 534 REMARK 465 ASN B 535 REMARK 465 SER B 536 REMARK 465 THR B 537 REMARK 465 GLY B 538 REMARK 465 THR B 582 REMARK 465 SER B 583 REMARK 465 ASP C 464 REMARK 465 HIS C 465 REMARK 465 PRO C 466 REMARK 465 THR C 531 REMARK 465 SER C 532 REMARK 465 SER C 533 REMARK 465 PRO C 534 REMARK 465 ASN C 535 REMARK 465 SER C 536 REMARK 465 THR C 537 REMARK 465 GLY C 538 REMARK 465 THR C 582 REMARK 465 SER C 583 REMARK 465 ASP D 464 REMARK 465 HIS D 465 REMARK 465 ASN D 529 REMARK 465 SER D 530 REMARK 465 THR D 531 REMARK 465 SER D 532 REMARK 465 SER D 533 REMARK 465 PRO D 534 REMARK 465 ASN D 535 REMARK 465 SER D 536 REMARK 465 THR D 537 REMARK 465 GLY D 538 REMARK 465 THR D 582 REMARK 465 SER D 583 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 505 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 480 CD CE NZ REMARK 470 PHE C 467 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS C 507 CG CD CE NZ REMARK 470 ARG C 555 CZ NH1 NH2 REMARK 470 LYS C 577 CE NZ REMARK 470 LYS D 501 CE NZ REMARK 470 ARG D 505 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 555 CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 554 CD NE CZ NH1 NH2 REMARK 480 ARG B 554 CD NE CZ NH1 NH2 REMARK 480 ARG C 554 CD NE CZ NH1 NH2 REMARK 480 PHE D 467 CG CD1 CD2 CE1 CE2 CZ REMARK 480 ARG D 554 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 508 O42 I4D A 1585 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N ALA D 503 O1 PO4 B 1584 1455 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 523 -71.66 -107.41 REMARK 500 THR B 523 -76.75 -109.41 REMARK 500 THR C 523 -75.86 -104.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D2050 DISTANCE = 6.27 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 1582 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 1583 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 D 1582 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1582 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 1582 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 D 1583 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 1584 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1583 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE I4D A 1584 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE I4D A 1585 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE I4D B 1585 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4A6F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SLM1-PH DOMAIN IN COMPLEX WITH PHOSPHOSERINE REMARK 900 RELATED ID: 4A6K RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SLM1-PH DOMAIN IN COMPLEX WITH D-MYO-INOSITOL- REMARK 900 4-PHOSPHATE DBREF 4A6H A 469 583 UNP P40485 SLM1_YEAST 469 583 DBREF 4A6H B 469 583 UNP P40485 SLM1_YEAST 469 583 DBREF 4A6H C 469 583 UNP P40485 SLM1_YEAST 469 583 DBREF 4A6H D 469 583 UNP P40485 SLM1_YEAST 469 583 SEQADV 4A6H ASP A 464 UNP P40485 EXPRESSION TAG SEQADV 4A6H HIS A 465 UNP P40485 EXPRESSION TAG SEQADV 4A6H PRO A 466 UNP P40485 EXPRESSION TAG SEQADV 4A6H PHE A 467 UNP P40485 EXPRESSION TAG SEQADV 4A6H THR A 468 UNP P40485 EXPRESSION TAG SEQADV 4A6H ASP B 464 UNP P40485 EXPRESSION TAG SEQADV 4A6H HIS B 465 UNP P40485 EXPRESSION TAG SEQADV 4A6H PRO B 466 UNP P40485 EXPRESSION TAG SEQADV 4A6H PHE B 467 UNP P40485 EXPRESSION TAG SEQADV 4A6H THR B 468 UNP P40485 EXPRESSION TAG SEQADV 4A6H ASP C 464 UNP P40485 EXPRESSION TAG SEQADV 4A6H HIS C 465 UNP P40485 EXPRESSION TAG SEQADV 4A6H PRO C 466 UNP P40485 EXPRESSION TAG SEQADV 4A6H PHE C 467 UNP P40485 EXPRESSION TAG SEQADV 4A6H THR C 468 UNP P40485 EXPRESSION TAG SEQADV 4A6H ASP D 464 UNP P40485 EXPRESSION TAG SEQADV 4A6H HIS D 465 UNP P40485 EXPRESSION TAG SEQADV 4A6H PRO D 466 UNP P40485 EXPRESSION TAG SEQADV 4A6H PHE D 467 UNP P40485 EXPRESSION TAG SEQADV 4A6H THR D 468 UNP P40485 EXPRESSION TAG SEQRES 1 A 120 ASP HIS PRO PHE THR GLU ILE LYS SER GLY PHE LEU GLU SEQRES 2 A 120 ARG ARG SER LYS PHE LEU LYS SER TYR SER LYS GLY TYR SEQRES 3 A 120 TYR VAL LEU THR PRO ASN PHE LEU HIS GLU PHE LYS THR SEQRES 4 A 120 ALA ASP ARG LYS LYS ASP LEU VAL PRO VAL MET SER LEU SEQRES 5 A 120 ALA LEU SER GLU CYS THR VAL THR GLU HIS SER ARG LYS SEQRES 6 A 120 ASN SER THR SER SER PRO ASN SER THR GLY SER ASP ALA SEQRES 7 A 120 LYS PHE VAL LEU HIS ALA LYS GLN ASN GLY ILE ILE ARG SEQRES 8 A 120 ARG GLY HIS ASN TRP VAL PHE LYS ALA ASP SER TYR GLU SEQRES 9 A 120 SER MET MET SER TRP PHE ASP ASN LEU LYS ILE LEU THR SEQRES 10 A 120 SER THR SER SEQRES 1 B 120 ASP HIS PRO PHE THR GLU ILE LYS SER GLY PHE LEU GLU SEQRES 2 B 120 ARG ARG SER LYS PHE LEU LYS SER TYR SER LYS GLY TYR SEQRES 3 B 120 TYR VAL LEU THR PRO ASN PHE LEU HIS GLU PHE LYS THR SEQRES 4 B 120 ALA ASP ARG LYS LYS ASP LEU VAL PRO VAL MET SER LEU SEQRES 5 B 120 ALA LEU SER GLU CYS THR VAL THR GLU HIS SER ARG LYS SEQRES 6 B 120 ASN SER THR SER SER PRO ASN SER THR GLY SER ASP ALA SEQRES 7 B 120 LYS PHE VAL LEU HIS ALA LYS GLN ASN GLY ILE ILE ARG SEQRES 8 B 120 ARG GLY HIS ASN TRP VAL PHE LYS ALA ASP SER TYR GLU SEQRES 9 B 120 SER MET MET SER TRP PHE ASP ASN LEU LYS ILE LEU THR SEQRES 10 B 120 SER THR SER SEQRES 1 C 120 ASP HIS PRO PHE THR GLU ILE LYS SER GLY PHE LEU GLU SEQRES 2 C 120 ARG ARG SER LYS PHE LEU LYS SER TYR SER LYS GLY TYR SEQRES 3 C 120 TYR VAL LEU THR PRO ASN PHE LEU HIS GLU PHE LYS THR SEQRES 4 C 120 ALA ASP ARG LYS LYS ASP LEU VAL PRO VAL MET SER LEU SEQRES 5 C 120 ALA LEU SER GLU CYS THR VAL THR GLU HIS SER ARG LYS SEQRES 6 C 120 ASN SER THR SER SER PRO ASN SER THR GLY SER ASP ALA SEQRES 7 C 120 LYS PHE VAL LEU HIS ALA LYS GLN ASN GLY ILE ILE ARG SEQRES 8 C 120 ARG GLY HIS ASN TRP VAL PHE LYS ALA ASP SER TYR GLU SEQRES 9 C 120 SER MET MET SER TRP PHE ASP ASN LEU LYS ILE LEU THR SEQRES 10 C 120 SER THR SER SEQRES 1 D 120 ASP HIS PRO PHE THR GLU ILE LYS SER GLY PHE LEU GLU SEQRES 2 D 120 ARG ARG SER LYS PHE LEU LYS SER TYR SER LYS GLY TYR SEQRES 3 D 120 TYR VAL LEU THR PRO ASN PHE LEU HIS GLU PHE LYS THR SEQRES 4 D 120 ALA ASP ARG LYS LYS ASP LEU VAL PRO VAL MET SER LEU SEQRES 5 D 120 ALA LEU SER GLU CYS THR VAL THR GLU HIS SER ARG LYS SEQRES 6 D 120 ASN SER THR SER SER PRO ASN SER THR GLY SER ASP ALA SEQRES 7 D 120 LYS PHE VAL LEU HIS ALA LYS GLN ASN GLY ILE ILE ARG SEQRES 8 D 120 ARG GLY HIS ASN TRP VAL PHE LYS ALA ASP SER TYR GLU SEQRES 9 D 120 SER MET MET SER TRP PHE ASP ASN LEU LYS ILE LEU THR SEQRES 10 D 120 SER THR SER HET PO4 A1582 5 HET PO4 A1583 5 HET I4D A1584 16 HET I4D A1585 16 HET PO4 B1582 5 HET PO4 B1583 5 HET PO4 B1584 5 HET I4D B1585 16 HET PO4 C1582 5 HET PO4 D1582 5 HET PO4 D1583 5 HETNAM PO4 PHOSPHATE ION HETNAM I4D D-MYO-INOSITOL-4-PHOSPHATE FORMUL 5 PO4 8(O4 P 3-) FORMUL 7 I4D 3(C6 H13 O9 P) FORMUL 16 HOH *377(H2 O) HELIX 1 1 SER A 565 THR A 580 1 16 HELIX 2 2 SER B 565 THR B 580 1 16 HELIX 3 3 SER C 565 SER C 581 1 17 HELIX 4 4 SER D 565 SER D 581 1 17 SHEET 1 AA 7 MET A 513 ALA A 516 0 SHEET 2 AA 7 PHE A 496 PHE A 500 -1 O LEU A 497 N LEU A 515 SHEET 3 AA 7 SER A 484 LEU A 492 -1 O TYR A 489 N PHE A 500 SHEET 4 AA 7 LYS A 471 SER A 479 -1 O LYS A 471 N LEU A 492 SHEET 5 AA 7 ASN A 558 LYS A 562 -1 O VAL A 560 N ARG A 478 SHEET 6 AA 7 LYS A 542 ALA A 547 -1 O PHE A 543 N PHE A 561 SHEET 7 AA 7 CYS A 520 HIS A 525 -1 O THR A 521 N HIS A 546 SHEET 1 BA 7 MET B 513 ALA B 516 0 SHEET 2 BA 7 PHE B 496 PHE B 500 -1 O LEU B 497 N LEU B 515 SHEET 3 BA 7 SER B 484 LEU B 492 -1 O TYR B 489 N PHE B 500 SHEET 4 BA 7 LYS B 471 SER B 479 -1 O LYS B 471 N LEU B 492 SHEET 5 BA 7 ASN B 558 LYS B 562 -1 O VAL B 560 N ARG B 478 SHEET 6 BA 7 LYS B 542 ALA B 547 -1 O PHE B 543 N PHE B 561 SHEET 7 BA 7 CYS B 520 HIS B 525 -1 O THR B 521 N HIS B 546 SHEET 1 CA 7 MET C 513 ALA C 516 0 SHEET 2 CA 7 PHE C 496 PHE C 500 -1 O LEU C 497 N LEU C 515 SHEET 3 CA 7 SER C 484 LEU C 492 -1 O TYR C 489 N PHE C 500 SHEET 4 CA 7 LYS C 471 SER C 479 -1 O LYS C 471 N LEU C 492 SHEET 5 CA 7 ASN C 558 LYS C 562 -1 O VAL C 560 N ARG C 478 SHEET 6 CA 7 LYS C 542 ALA C 547 -1 O PHE C 543 N PHE C 561 SHEET 7 CA 7 CYS C 520 HIS C 525 -1 O THR C 521 N HIS C 546 SHEET 1 DA 7 MET D 513 ALA D 516 0 SHEET 2 DA 7 PHE D 496 PHE D 500 -1 O LEU D 497 N LEU D 515 SHEET 3 DA 7 SER D 484 LEU D 492 -1 O TYR D 489 N PHE D 500 SHEET 4 DA 7 LYS D 471 SER D 479 -1 O LYS D 471 N LEU D 492 SHEET 5 DA 7 ASN D 558 LYS D 562 -1 O VAL D 560 N ARG D 478 SHEET 6 DA 7 LYS D 542 ALA D 547 -1 O PHE D 543 N PHE D 561 SHEET 7 DA 7 CYS D 520 HIS D 525 -1 O THR D 521 N HIS D 546 SITE 1 AC1 9 THR B 493 ASN B 495 PHE B 496 HIS B 498 SITE 2 AC1 9 HOH B2030 THR D 493 ASN D 495 PHE D 496 SITE 3 AC1 9 HIS D 498 SITE 1 AC2 3 HIS B 557 ASN B 558 HOH B2101 SITE 1 AC3 4 LYS D 480 HIS D 557 ASN D 558 HOH D2082 SITE 1 AC4 3 LYS A 480 HIS A 557 ASN A 558 SITE 1 AC5 5 HIS C 525 ARG C 527 LYS C 528 TYR C 566 SITE 2 AC5 5 MET C 570 SITE 1 AC6 4 ARG D 478 TYR D 485 LYS D 542 HOH D2084 SITE 1 AC7 8 PHE B 474 THR B 502 ALA B 503 HOH B2033 SITE 2 AC7 8 PHE D 474 THR D 502 ALA D 503 HOH D2034 SITE 1 AC8 7 THR A 493 ASN A 495 PHE A 496 HIS A 498 SITE 2 AC8 7 THR C 493 ASN C 495 HIS C 498 SITE 1 AC9 7 ARG A 478 LYS A 483 SER A 484 TYR A 485 SITE 2 AC9 7 SER A 539 LYS A 542 LYS A 562 SITE 1 BC1 10 PHE A 467 GLU A 469 TYR A 489 PHE A 500 SITE 2 BC1 10 THR A 502 ALA A 503 ASP A 504 ARG A 505 SITE 3 BC1 10 ASP A 508 LEU A 509 SITE 1 BC2 6 ARG B 478 LYS B 483 SER B 484 TYR B 485 SITE 2 BC2 6 SER B 539 LYS B 542 CRYST1 37.000 71.600 82.700 90.00 90.00 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027027 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013966 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012092 0.00000