HEADER OXIDOREDUCTASE 05-DEC-11 4AAN TITLE MACA WILD-TYPE FULLY REDUCED COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C551 PEROXIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 23-346; COMPND 5 SYNONYM: CYTOCHROME C PEROXIDASE; COMPND 6 EC: 1.11.1.5; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACTER SULFURREDUCENS; SOURCE 3 ORGANISM_TAXID: 243231; SOURCE 4 STRAIN: PCA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETSN22; SOURCE 11 OTHER_DETAILS: DSM KEYWDS OXIDOREDUCTASE, MULTIHEME CYTOCHROMES, CONFORMATIONAL REARRANGEMENT EXPDTA X-RAY DIFFRACTION AUTHOR J.SEIDEL REVDAT 2 20-DEC-23 4AAN 1 REMARK LINK REVDAT 1 17-OCT-12 4AAN 0 JRNL AUTH J.SEIDEL,M.HOFFMANN,K.E.ELLIS,A.SEIDEL,T.SPATZAL,S.GERHARDT, JRNL AUTH 2 S.J.ELLIOTT,O.EINSLE JRNL TITL MACA IS A SECOND CYTOCHROME C PEROXIDASE OF GEOBACTER JRNL TITL 2 SULFURREDUCENS. JRNL REF BIOCHEMISTRY V. 51 2747 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22417533 JRNL DOI 10.1021/BI300249U REMARK 2 REMARK 2 RESOLUTION. 1.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0113 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 77.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 98594 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5188 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.22 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7055 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 378 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2437 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 111 REMARK 3 SOLVENT ATOMS : 363 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.19000 REMARK 3 B22 (A**2) : 0.63000 REMARK 3 B33 (A**2) : -0.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.08000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.034 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.036 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.024 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.130 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.972 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2796 ; 0.026 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3864 ; 2.298 ; 2.026 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 375 ; 5.657 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 107 ;34.400 ;23.925 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 452 ;13.429 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;16.135 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 418 ; 0.157 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2176 ; 0.019 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 402 REMARK 3 ORIGIN FOR THE GROUP (A): 3.2668 -24.5805 -22.0362 REMARK 3 T TENSOR REMARK 3 T11: 0.0146 T22: 0.0044 REMARK 3 T33: 0.0138 T12: -0.0019 REMARK 3 T13: -0.0013 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.1235 L22: 0.0175 REMARK 3 L33: 0.1623 L12: -0.0257 REMARK 3 L13: -0.0530 L23: 0.0032 REMARK 3 S TENSOR REMARK 3 S11: 0.0041 S12: -0.0135 S13: 0.0064 REMARK 3 S21: 0.0088 S22: 0.0049 S23: -0.0087 REMARK 3 S31: -0.0035 S32: 0.0000 S33: -0.0090 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT. REMARK 4 REMARK 4 4AAN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1290050593. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 103844 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 19.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.63000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3HQ6 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE PH 5.6, 1 M REMARK 280 AMMONIUM PHOSPHATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.80000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.48500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.80000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.48500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -143.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 1.27847 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -77.91951 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2055 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TRP A 6 REMARK 465 SER A 7 REMARK 465 HIS A 8 REMARK 465 PRO A 9 REMARK 465 GLN A 10 REMARK 465 PHE A 11 REMARK 465 GLU A 12 REMARK 465 LYS A 13 REMARK 465 GLY A 14 REMARK 465 ALA A 15 REMARK 465 GLU A 16 REMARK 465 THR A 17 REMARK 465 ALA A 18 REMARK 465 VAL A 19 REMARK 465 PRO A 20 REMARK 465 ASN A 21 REMARK 465 SER A 22 REMARK 465 GLU A 23 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 27 CG CD CE NZ REMARK 470 LYS A 44 CG CD CE NZ REMARK 470 ASP A 45 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2047 O HOH A 2048 1.75 REMARK 500 O HOH A 2234 O HOH A 2235 1.86 REMARK 500 O HOH A 2089 O HOH A 2195 1.93 REMARK 500 NZ LYS A 39 O HOH A 2028 1.97 REMARK 500 O HOH A 2155 O HOH A 2156 2.04 REMARK 500 O HOH A 2065 O HOH A 2144 2.07 REMARK 500 O HOH A 2139 O HOH A 2145 2.09 REMARK 500 O HOH A 2131 O HOH A 2145 2.11 REMARK 500 O HOH A 2154 O HOH A 2161 2.12 REMARK 500 NZ LYS A 295 OD1 ASP A 308 2.13 REMARK 500 O HOH A 2056 O HOH A 2057 2.14 REMARK 500 O HOH A 2211 O HOH A 2213 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2054 O HOH A 2054 2554 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 240 CD GLU A 240 OE2 0.082 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 24 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 57 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP A 85 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP A 122 CB - CG - OD1 ANGL. DEV. = 8.1 DEGREES REMARK 500 ASP A 172 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP A 216 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP A 216 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ASP A 250 CB - CG - OD1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG A 254 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ASP A 339 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 46 76.06 -151.81 REMARK 500 PHE A 115 161.67 80.86 REMARK 500 GLU A 136 -107.31 -115.24 REMARK 500 PHE A 282 173.38 71.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 400 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 77 NE2 REMARK 620 2 HEC A 400 NA 88.9 REMARK 620 3 HEC A 400 NB 90.4 90.4 REMARK 620 4 HEC A 400 NC 93.6 177.4 88.8 REMARK 620 5 HEC A 400 ND 93.5 89.5 176.1 91.1 REMARK 620 6 HOH A2154 O 175.3 89.4 94.0 88.2 82.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 101 OD1 REMARK 620 2 THR A 278 O 150.9 REMARK 620 3 PRO A 280 O 92.1 83.7 REMARK 620 4 HOH A2096 O 78.6 72.4 87.1 REMARK 620 5 HOH A2097 O 87.6 91.7 169.9 82.9 REMARK 620 6 HOH A2122 O 68.8 138.8 85.2 146.2 104.1 REMARK 620 7 HOH A2299 O 136.7 71.7 105.0 140.4 81.9 73.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 223 NE2 REMARK 620 2 HEC A 401 NA 91.7 REMARK 620 3 HEC A 401 NB 90.5 89.9 REMARK 620 4 HEC A 401 NC 90.5 177.8 90.3 REMARK 620 5 HEC A 401 ND 91.7 89.4 177.8 90.2 REMARK 620 6 MET A 297 SD 175.1 91.4 85.7 86.5 92.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU3 A 1347 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU3 A 1348 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU3 A 1349 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU3 A 1350 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4AAL RELATED DB: PDB REMARK 900 MACA WILD-TYPE OXIDIZED REMARK 900 RELATED ID: 4AA0 RELATED DB: PDB REMARK 900 P38ALPHA MAP KINASE BOUND TO CMPD 2 REMARK 900 RELATED ID: 4AAM RELATED DB: PDB REMARK 900 MACA WILD-TYPE MIXED-VALENCE DBREF 4AAN A 23 346 UNP Q74FY6 Q74FY6_GEOSL 23 346 SEQADV 4AAN TRP A 6 UNP Q74FY6 EXPRESSION TAG SEQADV 4AAN SER A 7 UNP Q74FY6 EXPRESSION TAG SEQADV 4AAN HIS A 8 UNP Q74FY6 EXPRESSION TAG SEQADV 4AAN PRO A 9 UNP Q74FY6 EXPRESSION TAG SEQADV 4AAN GLN A 10 UNP Q74FY6 EXPRESSION TAG SEQADV 4AAN PHE A 11 UNP Q74FY6 EXPRESSION TAG SEQADV 4AAN GLU A 12 UNP Q74FY6 EXPRESSION TAG SEQADV 4AAN LYS A 13 UNP Q74FY6 EXPRESSION TAG SEQADV 4AAN GLY A 14 UNP Q74FY6 EXPRESSION TAG SEQADV 4AAN ALA A 15 UNP Q74FY6 EXPRESSION TAG SEQADV 4AAN GLU A 16 UNP Q74FY6 EXPRESSION TAG SEQADV 4AAN THR A 17 UNP Q74FY6 EXPRESSION TAG SEQADV 4AAN ALA A 18 UNP Q74FY6 EXPRESSION TAG SEQADV 4AAN VAL A 19 UNP Q74FY6 EXPRESSION TAG SEQADV 4AAN PRO A 20 UNP Q74FY6 EXPRESSION TAG SEQADV 4AAN ASN A 21 UNP Q74FY6 EXPRESSION TAG SEQADV 4AAN SER A 22 UNP Q74FY6 EXPRESSION TAG SEQRES 1 A 341 TRP SER HIS PRO GLN PHE GLU LYS GLY ALA GLU THR ALA SEQRES 2 A 341 VAL PRO ASN SER GLU ASP VAL MET LYS ARG ALA GLN GLY SEQRES 3 A 341 LEU PHE LYS PRO ILE PRO ALA LYS PRO PRO VAL MET LYS SEQRES 4 A 341 ASP ASN PRO ALA SER PRO SER ARG VAL GLU LEU GLY ARG SEQRES 5 A 341 MET LEU PHE PHE ASP PRO ARG LEU SER ALA SER HIS LEU SEQRES 6 A 341 ILE SER CYS ASN THR CYS HIS ASN VAL GLY LEU GLY GLY SEQRES 7 A 341 THR ASP ILE LEU GLU THR SER ILE GLY HIS GLY TRP GLN SEQRES 8 A 341 LYS GLY PRO ARG ASN SER PRO THR VAL LEU ASN ALA VAL SEQRES 9 A 341 TYR ASN ILE ALA GLN PHE TRP ASP GLY ARG ALA GLU ASP SEQRES 10 A 341 LEU ALA ALA GLN ALA LYS GLY PRO VAL GLN ALA SER VAL SEQRES 11 A 341 GLU MET ASN ASN LYS PRO GLU ASN LEU VAL ALA THR LEU SEQRES 12 A 341 LYS SER ILE PRO GLY TYR PRO PRO LEU PHE ARG LYS ALA SEQRES 13 A 341 PHE PRO GLY GLN GLY ASP PRO VAL THR PHE ASP ASN VAL SEQRES 14 A 341 ALA LYS ALA ILE GLU VAL PHE GLU ALA THR LEU VAL THR SEQRES 15 A 341 PRO ASP ALA PRO PHE ASP LYS TYR LEU LYS GLY ASN ARG SEQRES 16 A 341 LYS ALA ILE SER SER THR ALA GLU GLN GLY LEU ALA LEU SEQRES 17 A 341 PHE LEU ASP LYS GLY CYS ALA ALA CYS HIS SER GLY VAL SEQRES 18 A 341 ASN MET GLY GLY THR GLY TYR PHE PRO PHE GLY VAL ARG SEQRES 19 A 341 GLU ASP PRO GLY PRO VAL VAL ARG PRO VAL ASP ASP THR SEQRES 20 A 341 GLY ARG TYR LYS VAL THR SER THR ALA ALA ASP LYS TYR SEQRES 21 A 341 VAL PHE ARG SER PRO SER LEU ARG ASN VAL ALA ILE THR SEQRES 22 A 341 MET PRO TYR PHE HIS SER GLY LYS VAL TRP LYS LEU LYS SEQRES 23 A 341 ASP ALA VAL LYS ILE MET GLY SER ALA GLN LEU GLY ILE SEQRES 24 A 341 SER ILE THR ASP ALA ASP ALA ASP LYS ILE VAL THR PHE SEQRES 25 A 341 LEU ASN THR LEU THR GLY ALA GLN PRO LYS VAL MET HIS SEQRES 26 A 341 PRO VAL LEU PRO PRO ASN SER ASP ASP THR PRO ARG PRO SEQRES 27 A 341 VAL SER ASN HET HEC A 400 43 HET HEC A 401 43 HET CA A 402 1 HET BU3 A1347 6 HET BU3 A1348 6 HET BU3 A1349 6 HET BU3 A1350 6 HETNAM HEC HEME C HETNAM CA CALCIUM ION HETNAM BU3 (R,R)-2,3-BUTANEDIOL FORMUL 2 HEC 2(C34 H34 FE N4 O4) FORMUL 4 CA CA 2+ FORMUL 5 BU3 4(C4 H10 O2) FORMUL 9 HOH *363(H2 O) HELIX 1 1 ASP A 24 GLY A 31 1 8 HELIX 2 2 SER A 49 ASP A 62 1 14 HELIX 3 3 PRO A 63 SER A 66 5 4 HELIX 4 4 SER A 72 HIS A 77 1 6 HELIX 5 5 ASN A 78 GLY A 82 5 5 HELIX 6 6 HIS A 93 TRP A 95 5 3 HELIX 7 7 ASN A 107 ASN A 111 5 5 HELIX 8 8 ASP A 122 ALA A 133 1 12 HELIX 9 9 LYS A 140 ILE A 151 1 12 HELIX 10 10 GLY A 153 PHE A 162 1 10 HELIX 11 11 THR A 170 ALA A 183 1 14 HELIX 12 12 ALA A 190 LYS A 197 1 8 HELIX 13 13 ASN A 199 ILE A 203 5 5 HELIX 14 14 SER A 204 LYS A 217 1 14 HELIX 15 15 GLY A 218 CYS A 222 5 5 HELIX 16 16 ARG A 254 SER A 259 1 6 HELIX 17 17 THR A 260 LYS A 264 5 5 HELIX 18 18 ASN A 274 THR A 278 5 5 HELIX 19 19 LYS A 289 GLY A 303 1 15 HELIX 20 20 THR A 307 THR A 320 1 14 SHEET 1 AA 2 ILE A 91 GLY A 92 0 SHEET 2 AA 2 GLN A 96 LYS A 97 -1 O GLN A 96 N GLY A 92 SHEET 1 AB 2 TYR A 233 PRO A 235 0 SHEET 2 AB 2 VAL A 266 ARG A 268 -1 O PHE A 267 N PHE A 234 LINK SG CYS A 73 CAB HEC A 400 1555 1555 1.87 LINK SG CYS A 76 CAC HEC A 400 1555 1555 1.86 LINK SG CYS A 219 CAB HEC A 401 1555 1555 1.78 LINK SG CYS A 222 CAC HEC A 401 1555 1555 1.88 LINK NE2 HIS A 77 FE HEC A 400 1555 1555 2.03 LINK OD1 ASN A 101 CA CA A 402 1555 1555 2.44 LINK NE2 HIS A 223 FE HEC A 401 1555 1555 2.07 LINK O THR A 278 CA CA A 402 1555 1555 2.34 LINK O PRO A 280 CA CA A 402 1555 1555 2.32 LINK SD AMET A 297 FE HEC A 401 1555 1555 2.30 LINK FE HEC A 400 O HOH A2154 1555 1555 2.10 LINK CA CA A 402 O HOH A2096 1555 1555 2.50 LINK CA CA A 402 O HOH A2097 1555 1555 2.34 LINK CA CA A 402 O HOH A2122 1555 1555 2.42 LINK CA CA A 402 O HOH A2299 1555 1555 2.42 CISPEP 1 MET A 279 PRO A 280 0 -12.30 SITE 1 AC1 23 ILE A 71 SER A 72 CYS A 73 CYS A 76 SITE 2 AC1 23 HIS A 77 SER A 90 ARG A 100 PRO A 103 SITE 3 AC1 23 ASN A 111 GLN A 114 PHE A 115 TRP A 116 SITE 4 AC1 23 ARG A 119 LEU A 123 GLN A 126 PRO A 130 SITE 5 AC1 23 GLU A 136 ILE A 178 GLU A 182 ARG A 268 SITE 6 AC1 23 HOH A2124 HOH A2144 HOH A2154 SITE 1 AC2 19 TRP A 116 CYS A 219 CYS A 222 HIS A 223 SITE 2 AC2 19 PHE A 234 PHE A 236 PHE A 267 PRO A 270 SITE 3 AC2 19 LEU A 272 TYR A 281 PHE A 282 HIS A 283 SITE 4 AC2 19 LEU A 290 MET A 297 GLN A 301 HOH A2122 SITE 5 AC2 19 HOH A2293 HOH A2299 HOH A2362 SITE 1 AC3 7 ASN A 101 THR A 278 PRO A 280 HOH A2096 SITE 2 AC3 7 HOH A2097 HOH A2122 HOH A2299 SITE 1 AC4 8 ALA A 67 HIS A 69 ASN A 139 ASN A 143 SITE 2 AC4 8 THR A 147 PRO A 341 ARG A 342 HOH A2063 SITE 1 AC5 5 ASN A 138 LYS A 140 GLN A 165 GLY A 166 SITE 2 AC5 5 HOH A2176 SITE 1 AC6 5 LEU A 32 ALA A 221 SER A 224 HOH A2239 SITE 2 AC6 5 HOH A2248 SITE 1 AC7 4 ASN A 138 GLY A 166 VAL A 344 ASN A 346 CRYST1 95.600 46.970 77.930 90.00 90.94 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010460 0.000000 0.000172 0.00000 SCALE2 0.000000 0.021290 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012834 0.00000