HEADER HYDROLASE 05-DEC-11 4AAX TITLE CPGH89CBM32-5, FROM CLOSTRIDIUM PERFRINGENS, IN COMPLEX WITH N- TITLE 2 ACETYLGALACTOSAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-N-ACETYLGLUCOSAMINIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CBM32-5, RESIDUES 1365-1502; COMPND 5 SYNONYM: GH89_CBM32-5; COMPND 6 EC: 3.2.1.50; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PERFRINGENS; SOURCE 3 ORGANISM_TAXID: 1502; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: STAR KEYWDS HYDROLASE, FAMILY 89 GLYCOSIDE HYDROLASE, FAMILY 32 CARBOHYDRATE- KEYWDS 2 BINDING MODULE, GH89, CBM32. EXPDTA X-RAY DIFFRACTION AUTHOR E.FICKO-BLEAN,C.P.STUART,M.D.SUITS,M.CID,M.TESSIER,R.J.WOODS, AUTHOR 2 A.B.BORASTON REVDAT 4 08-MAY-24 4AAX 1 REMARK HETSYN REVDAT 3 29-JUL-20 4AAX 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 18-APR-12 4AAX 1 JRNL REVDAT 1 04-APR-12 4AAX 0 JRNL AUTH E.FICKO-BLEAN,C.P.STUART,M.D.SUITS,M.CID,M.TESSIER, JRNL AUTH 2 R.J.WOODS,A.B.BORASTON JRNL TITL CARBOHYDRATE RECOGNITION BY AN ARCHITECTURALLY COMPLEX JRNL TITL 2 ALPHA-N-ACETYLGLUCOSAMINIDASE FROM CLOSTRIDIUM PERFRINGENS. JRNL REF PLOS ONE V. 7 33524 2012 JRNL REFN ESSN 1932-6203 JRNL PMID 22479408 JRNL DOI 10.1371/JOURNAL.PONE.0033524 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 66214 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 518 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 732 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.4640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1067 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 138 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.81000 REMARK 3 B22 (A**2) : 1.62000 REMARK 3 B33 (A**2) : -0.83000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.190 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.178 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.139 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.693 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1111 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1504 ; 1.380 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 141 ; 6.879 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 48 ;35.015 ;25.833 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 184 ;14.624 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;16.601 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 167 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 836 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 696 ; 0.860 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1111 ; 1.526 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 415 ; 2.167 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 393 ; 3.476 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4AAX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1290050601. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66214 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.140 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 32.90750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.63400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 32.90750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.63400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1333 REMARK 465 GLY A 1334 REMARK 465 SER A 1335 REMARK 465 SER A 1336 REMARK 465 HIS A 1337 REMARK 465 HIS A 1338 REMARK 465 HIS A 1339 REMARK 465 HIS A 1340 REMARK 465 HIS A 1341 REMARK 465 HIS A 1342 REMARK 465 SER A 1343 REMARK 465 SER A 1344 REMARK 465 GLY A 1345 REMARK 465 LEU A 1346 REMARK 465 VAL A 1347 REMARK 465 PRO A 1348 REMARK 465 ARG A 1349 REMARK 465 GLY A 1350 REMARK 465 SER A 1351 REMARK 465 HIS A 1352 REMARK 465 MET A 1353 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASN A 1396 OD1 ND2 REMARK 480 ASN A 1416 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A1396 CG ASN A1396 OD1 0.283 REMARK 500 ASN A1396 CG ASN A1396 ND2 -0.458 REMARK 500 ASN A1416 CG ASN A1416 ND2 0.281 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A1396 CB - CG - OD1 ANGL. DEV. = -19.9 DEGREES REMARK 500 ASN A1416 OD1 - CG - ND2 ANGL. DEV. = -24.6 DEGREES REMARK 500 ASN A1416 CB - CG - ND2 ANGL. DEV. = -26.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A1372 97.47 -69.04 REMARK 500 ASN A1375 -6.60 74.81 REMARK 500 ASN A1396 70.02 44.88 REMARK 500 ASN A1443 -53.35 -124.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASN A1416 0.24 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2494 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A1381 O REMARK 620 2 ASP A1384 OD1 77.2 REMARK 620 3 LYS A1386 O 172.9 96.0 REMARK 620 4 THR A1389 O 93.6 139.9 90.6 REMARK 620 5 THR A1389 OG1 89.3 68.4 86.5 72.6 REMARK 620 6 ALA A1487 O 82.3 134.4 104.0 81.0 151.7 REMARK 620 7 GLU A1488 OE2 95.8 69.8 83.2 150.3 135.5 72.4 REMARK 620 N 1 2 3 4 5 6 DBREF 4AAX A 1356 1493 UNP Q8XM24 Q8XM24_CLOPE 1365 1502 SEQADV 4AAX MET A 1333 UNP Q8XM24 EXPRESSION TAG SEQADV 4AAX GLY A 1334 UNP Q8XM24 EXPRESSION TAG SEQADV 4AAX SER A 1335 UNP Q8XM24 EXPRESSION TAG SEQADV 4AAX SER A 1336 UNP Q8XM24 EXPRESSION TAG SEQADV 4AAX HIS A 1337 UNP Q8XM24 EXPRESSION TAG SEQADV 4AAX HIS A 1338 UNP Q8XM24 EXPRESSION TAG SEQADV 4AAX HIS A 1339 UNP Q8XM24 EXPRESSION TAG SEQADV 4AAX HIS A 1340 UNP Q8XM24 EXPRESSION TAG SEQADV 4AAX HIS A 1341 UNP Q8XM24 EXPRESSION TAG SEQADV 4AAX HIS A 1342 UNP Q8XM24 EXPRESSION TAG SEQADV 4AAX SER A 1343 UNP Q8XM24 EXPRESSION TAG SEQADV 4AAX SER A 1344 UNP Q8XM24 EXPRESSION TAG SEQADV 4AAX GLY A 1345 UNP Q8XM24 EXPRESSION TAG SEQADV 4AAX LEU A 1346 UNP Q8XM24 EXPRESSION TAG SEQADV 4AAX VAL A 1347 UNP Q8XM24 EXPRESSION TAG SEQADV 4AAX PRO A 1348 UNP Q8XM24 EXPRESSION TAG SEQADV 4AAX ARG A 1349 UNP Q8XM24 EXPRESSION TAG SEQADV 4AAX GLY A 1350 UNP Q8XM24 EXPRESSION TAG SEQADV 4AAX SER A 1351 UNP Q8XM24 EXPRESSION TAG SEQADV 4AAX HIS A 1352 UNP Q8XM24 EXPRESSION TAG SEQADV 4AAX MET A 1353 UNP Q8XM24 EXPRESSION TAG SEQADV 4AAX ALA A 1354 UNP Q8XM24 EXPRESSION TAG SEQADV 4AAX SER A 1355 UNP Q8XM24 EXPRESSION TAG SEQRES 1 A 161 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 161 LEU VAL PRO ARG GLY SER HIS MET ALA SER ALA LEU PRO SEQRES 3 A 161 GLN GLY ASN MET LYS ALA THR ALA THR SER GLU HIS PRO SEQRES 4 A 161 ASP VAL GLY ASN GLU GLY LEU ALA LYS PHE ALA ILE ASP SEQRES 5 A 161 GLY LYS GLU ASN THR ILE TRP HIS THR LYS TYR ASN PRO SEQRES 6 A 161 VAL GLU GLU LEU PRO GLN SER ILE THR LEU GLU LEU GLY SEQRES 7 A 161 GLY SER TYR GLU ILE ASN LYS PHE THR TYR LEU PRO ARG SEQRES 8 A 161 SER GLY ALA LYS ASN GLY ASN ILE THR LYS TYR GLU LEU SEQRES 9 A 161 HIS VAL SER GLU ASP GLY ASN ASN PHE ARG LYS ILE SER SEQRES 10 A 161 GLU GLY ASN TRP ASP ASP SER GLY SER LEU LYS THR LEU SEQRES 11 A 161 LYS PHE ASN SER THR LYS ALA THR HIS VAL LYS LEU VAL SEQRES 12 A 161 ALA LEU GLU GLY VAL GLY GLY PHE ALA SER ALA ALA GLU SEQRES 13 A 161 LEU ASN VAL PHE ALA HET CA A2494 1 HET NA A2495 1 HET NGA A4641 15 HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETNAM NGA 2-ACETAMIDO-2-DEOXY-BETA-D-GALACTOPYRANOSE HETSYN NGA N-ACETYL-BETA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NGA BETA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 NGA ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-D-GALACTOSAMINE FORMUL 2 CA CA 2+ FORMUL 3 NA NA 1+ FORMUL 4 NGA C8 H15 N O6 FORMUL 5 HOH *138(H2 O) HELIX 1 1 PRO A 1358 MET A 1362 5 5 HELIX 2 2 LEU A 1378 ASP A 1384 5 7 HELIX 3 3 GLY A 1481 PHE A 1483 5 3 SHEET 1 AA 6 SER A1355 ALA A1356 0 SHEET 2 AA 6 GLU A1488 ALA A1493 -1 O ALA A1493 N SER A1355 SHEET 3 AA 6 GLN A1403 LEU A1421 -1 N ASN A1416 O PHE A1492 SHEET 4 AA 6 LYS A1460 GLY A1479 -1 O LYS A1460 N TYR A1420 SHEET 5 AA 6 ILE A1431 SER A1439 -1 N THR A1432 O GLU A1478 SHEET 6 AA 6 PHE A1445 ASN A1452 -1 O ARG A1446 N VAL A1438 SHEET 1 AB 4 SER A1355 ALA A1356 0 SHEET 2 AB 4 GLU A1488 ALA A1493 -1 O ALA A1493 N SER A1355 SHEET 3 AB 4 GLN A1403 LEU A1421 -1 N ASN A1416 O PHE A1492 SHEET 4 AB 4 LYS A1363 ALA A1366 -1 O LYS A1363 N GLU A1408 SHEET 1 AC 2 TRP A1391 HIS A1392 0 SHEET 2 AC 2 SER A1485 ALA A1486 -1 O ALA A1486 N TRP A1391 LINK O PHE A1381 CA CA A2494 1555 1555 2.22 LINK OD1 ASP A1384 CA CA A2494 1555 1555 2.52 LINK O LYS A1386 CA CA A2494 1555 1555 2.32 LINK O THR A1389 CA CA A2494 1555 1555 2.35 LINK OG1 THR A1389 CA CA A2494 1555 1555 2.53 LINK OE2 GLU A1478 NA NA A2495 1555 1555 3.03 LINK O ALA A1487 CA CA A2494 1555 1555 2.42 LINK OE2 GLU A1488 CA CA A2494 1555 1555 2.47 CISPEP 1 GLU A 1376 GLY A 1377 0 -1.36 CISPEP 2 ASN A 1396 PRO A 1397 0 -2.82 CISPEP 3 LEU A 1401 PRO A 1402 0 3.46 CRYST1 65.815 37.268 57.410 90.00 103.51 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015194 0.000000 0.003651 0.00000 SCALE2 0.000000 0.026833 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017914 0.00000