HEADER HYDROLASE 21-DEC-11 4AD3 TITLE STRUCTURE OF THE GH99 ENDO-ALPHA-MANNOSIDASE FROM BACTEROIDES TITLE 2 XYLANISOLVENS IN COMPLEX WITH GLUCOSE-1,3-DEOXYMANNOJIRIMYCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSYL HYDROLASE FAMILY 71; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: ENDO-ALPHA-MANNOSIDASE; COMPND 5 EC: 3.2.1.130; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES XYLANISOLVENS; SOURCE 3 ORGANISM_TAXID: 657309; SOURCE 4 STRAIN: XB1A; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS HYDROLASE, GLYCOSIDE HYDROLASE, GH99, CAZY, ENZYME-CARBOHYDRATE KEYWDS 2 INTERACTION, MANNOSE GLYCOSIDASE INHIBITION EXPDTA X-RAY DIFFRACTION AUTHOR A.J.THOMPSON,R.J.WILLIAMS,Z.HAKKI,D.S.ALONZI,T.WENNEKES,T.M.GLOSTER, AUTHOR 2 K.SONGSRIROTE,J.E.THOMAS-OATES,T.M.WRODNIGG,J.SPREITZ,A.E.STUETZ, AUTHOR 3 T.D.BUTTERS,S.J.WILLIAMS,G.J.DAVIES REVDAT 4 01-MAY-24 4AD3 1 HETSYN REVDAT 3 29-JUL-20 4AD3 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 29-FEB-12 4AD3 1 JRNL REVDAT 1 01-FEB-12 4AD3 0 JRNL AUTH A.J.THOMPSON,R.J.WILLIAMS,Z.HAKKI,D.S.ALONZI,T.WENNEKES, JRNL AUTH 2 T.M.GLOSTER,K.SONGSRIROTE,J.E.THOMAS-OATES,T.M.WRODNIGG, JRNL AUTH 3 J.SPREITZ,A.E.STUTZ,T.D.BUTTERS,S.J.WILLIAMS,G.J.DAVIES JRNL TITL STRUCTURAL AND MECHANISTIC INSIGHT INTO N-GLYCAN PROCESSING JRNL TITL 2 BY ENDO-ALPHA-MANNOSIDASE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 781 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22219371 JRNL DOI 10.1073/PNAS.1111482109 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0086 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 153609 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 8060 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 10944 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 567 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 10965 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 1374 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : 0.12000 REMARK 3 B33 (A**2) : -0.18000 REMARK 3 B12 (A**2) : 0.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.892 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 11470 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 15656 ; 1.242 ; 1.937 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1390 ; 5.938 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 548 ;36.237 ;23.193 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1659 ;14.586 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 68 ;15.441 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1624 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9027 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 5500 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 7880 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 1229 ; 0.139 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 85 ; 0.196 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 60 ; 0.182 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 11470 ; 0.012 ; 0.022 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 15656 ; 1.242 ; 1.937 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4AD3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1290050345. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 161771 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 9.80 REMARK 200 R MERGE FOR SHELL (I) : 0.98000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PREVIOUSLY SOLVED STRUCTURE OF CLOSELY RELATED REMARK 200 HOMOLOG REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 4.9, 20% W/V REMARK 280 PEG 2000 MME, 1.6% PGA-LM (POLY-GAMMA-GLUTAMIC ACID LOW REMARK 280 MOLECULAR WEIGHT), PH 5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.23833 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.47667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 56.47667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.23833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2186 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 ILE A 3 REMARK 465 PHE A 4 REMARK 465 PHE A 5 REMARK 465 LEU A 6 REMARK 465 SER A 7 REMARK 465 LEU A 8 REMARK 465 SER A 9 REMARK 465 LEU A 10 REMARK 465 GLU A 11 REMARK 465 SER A 12 REMARK 465 CYS A 13 REMARK 465 SER A 14 REMARK 465 LYS A 15 REMARK 465 GLU A 16 REMARK 465 ASP A 17 REMARK 465 ASP A 18 REMARK 465 ASN A 19 REMARK 465 ASN A 20 REMARK 465 PRO A 21 REMARK 465 SER A 22 REMARK 465 ASN A 23 REMARK 465 SER A 24 REMARK 465 GLU A 25 REMARK 465 ASN A 26 REMARK 465 ASN A 27 REMARK 465 GLY A 28 REMARK 465 GLY A 29 REMARK 465 ASN A 30 REMARK 465 ASN A 31 REMARK 465 ASN A 32 REMARK 465 LEU A 33 REMARK 465 GLY A 34 REMARK 465 GLN A 380 REMARK 465 MET B 1 REMARK 465 MET B 2 REMARK 465 ILE B 3 REMARK 465 PHE B 4 REMARK 465 PHE B 5 REMARK 465 LEU B 6 REMARK 465 SER B 7 REMARK 465 LEU B 8 REMARK 465 SER B 9 REMARK 465 LEU B 10 REMARK 465 GLU B 11 REMARK 465 SER B 12 REMARK 465 CYS B 13 REMARK 465 SER B 14 REMARK 465 LYS B 15 REMARK 465 GLU B 16 REMARK 465 ASP B 17 REMARK 465 ASP B 18 REMARK 465 ASN B 19 REMARK 465 ASN B 20 REMARK 465 PRO B 21 REMARK 465 SER B 22 REMARK 465 ASN B 23 REMARK 465 SER B 24 REMARK 465 GLU B 25 REMARK 465 ASN B 26 REMARK 465 ASN B 27 REMARK 465 GLY B 28 REMARK 465 GLY B 29 REMARK 465 ASN B 30 REMARK 465 ASN B 31 REMARK 465 ASN B 32 REMARK 465 LEU B 33 REMARK 465 GLY B 34 REMARK 465 MET C 1 REMARK 465 MET C 2 REMARK 465 ILE C 3 REMARK 465 PHE C 4 REMARK 465 PHE C 5 REMARK 465 LEU C 6 REMARK 465 SER C 7 REMARK 465 LEU C 8 REMARK 465 SER C 9 REMARK 465 LEU C 10 REMARK 465 GLU C 11 REMARK 465 SER C 12 REMARK 465 CYS C 13 REMARK 465 SER C 14 REMARK 465 LYS C 15 REMARK 465 GLU C 16 REMARK 465 ASP C 17 REMARK 465 ASP C 18 REMARK 465 ASN C 19 REMARK 465 ASN C 20 REMARK 465 PRO C 21 REMARK 465 SER C 22 REMARK 465 ASN C 23 REMARK 465 SER C 24 REMARK 465 GLU C 25 REMARK 465 ASN C 26 REMARK 465 ASN C 27 REMARK 465 GLY C 28 REMARK 465 GLY C 29 REMARK 465 ASN C 30 REMARK 465 ASN C 31 REMARK 465 ASN C 32 REMARK 465 LEU C 33 REMARK 465 GLY C 34 REMARK 465 THR C 35 REMARK 465 GLN C 380 REMARK 465 MET D 1 REMARK 465 MET D 2 REMARK 465 ILE D 3 REMARK 465 PHE D 4 REMARK 465 PHE D 5 REMARK 465 LEU D 6 REMARK 465 SER D 7 REMARK 465 LEU D 8 REMARK 465 SER D 9 REMARK 465 LEU D 10 REMARK 465 GLU D 11 REMARK 465 SER D 12 REMARK 465 CYS D 13 REMARK 465 SER D 14 REMARK 465 LYS D 15 REMARK 465 GLU D 16 REMARK 465 ASP D 17 REMARK 465 ASP D 18 REMARK 465 ASN D 19 REMARK 465 ASN D 20 REMARK 465 PRO D 21 REMARK 465 SER D 22 REMARK 465 ASN D 23 REMARK 465 SER D 24 REMARK 465 GLU D 25 REMARK 465 ASN D 26 REMARK 465 ASN D 27 REMARK 465 GLY D 28 REMARK 465 GLY D 29 REMARK 465 ASN D 30 REMARK 465 ASN D 31 REMARK 465 ASN D 32 REMARK 465 LEU D 33 REMARK 465 GLY D 34 REMARK 465 THR D 35 REMARK 465 GLU D 36 REMARK 465 SER D 349 REMARK 465 GLN D 380 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 35 OG1 CG2 REMARK 470 GLU A 131 CG CD OE1 OE2 REMARK 470 LYS A 135 CG CD CE NZ REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 THR B 35 OG1 CG2 REMARK 470 SER B 73 OG REMARK 470 LYS B 135 CG CD CE NZ REMARK 470 GLN C 164 CG CD OE1 NE2 REMARK 470 LEU D 37 CG CD1 CD2 REMARK 470 ASP D 38 CG OD1 OD2 REMARK 470 GLU D 52 CG CD OE1 OE2 REMARK 470 ILE D 54 CG1 CG2 CD1 REMARK 470 ARG D 59 CG CD NE CZ NH1 NH2 REMARK 470 ASN D 70 CG OD1 ND2 REMARK 470 SER D 73 OG REMARK 470 ASN D 76 CG OD1 ND2 REMARK 470 GLN D 84 CG CD OE1 NE2 REMARK 470 ILE D 87 CG1 CG2 CD1 REMARK 470 LEU D 95 CG CD1 CD2 REMARK 470 ILE D 105 CG1 CG2 CD1 REMARK 470 LEU D 106 CG CD1 CD2 REMARK 470 LYS D 108 CG CD CE NZ REMARK 470 PHE D 113 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL D 114 CG1 CG2 REMARK 470 THR D 118 OG1 CG2 REMARK 470 GLU D 131 CG CD OE1 OE2 REMARK 470 ASP D 145 CG OD1 OD2 REMARK 470 LYS D 147 CG CD CE NZ REMARK 470 LYS D 148 CG CD CE NZ REMARK 470 ILE D 149 CG1 CG2 CD1 REMARK 470 GLN D 164 CG CD OE1 NE2 REMARK 470 LYS D 172 CG CD CE NZ REMARK 470 LYS D 186 CG CD CE NZ REMARK 470 ASP D 187 CG OD1 OD2 REMARK 470 GLU D 206 CG CD OE1 OE2 REMARK 470 LEU D 209 CG CD1 CD2 REMARK 470 PHE D 240 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS D 272 CG CD CE NZ REMARK 470 GLU D 276 CG CD OE1 OE2 REMARK 470 ILE D 290 CG1 CG2 CD1 REMARK 470 ILE D 294 CG1 CG2 CD1 REMARK 470 PRO D 296 CG CD REMARK 470 VAL D 301 CG1 CG2 REMARK 470 THR D 304 OG1 CG2 REMARK 470 THR D 306 OG1 CG2 REMARK 470 ASP D 307 CG OD1 OD2 REMARK 470 GLN D 309 CG CD OE1 NE2 REMARK 470 TYR D 311 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG D 316 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 320 CG CD OE1 OE2 REMARK 470 PHE D 331 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE D 340 CG1 CG2 CD1 REMARK 470 SER D 348 OG REMARK 470 LEU D 354 CG CD1 CD2 REMARK 470 TYR D 356 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU D 357 CG CD OE1 OE2 REMARK 470 ASN D 358 CG OD1 ND2 REMARK 470 ARG D 359 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 360 CG CD OE1 OE2 REMARK 470 PRO D 361 CG CD REMARK 470 TYR D 363 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG D 367 CG CD NE CZ NH1 NH2 REMARK 470 TYR D 370 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS D 374 CG CD CE NZ REMARK 470 ARG D 376 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 377 CG CD OE1 OE2 REMARK 470 SER D 378 OG REMARK 470 LYS D 379 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG2 THR C 265 O HOH C 2275 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ASP D 187 ND2 ASN D 219 6554 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 136 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 LEU D 121 CA - CB - CG ANGL. DEV. = 15.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 60 -37.65 67.33 REMARK 500 GLN A 129 -13.75 82.69 REMARK 500 THR A 231 -73.12 -106.17 REMARK 500 SER A 232 -151.10 -96.24 REMARK 500 TYR A 252 -59.38 58.44 REMARK 500 ASN A 332 43.37 -151.58 REMARK 500 GLU A 357 -122.49 63.95 REMARK 500 HIS B 60 -38.93 68.04 REMARK 500 ASP B 130 -167.97 -128.87 REMARK 500 THR B 231 -75.85 -104.51 REMARK 500 SER B 232 -155.13 -93.77 REMARK 500 TYR B 252 -61.30 58.45 REMARK 500 ASN B 332 40.43 -149.04 REMARK 500 GLU B 357 -121.99 63.09 REMARK 500 ASN B 358 31.57 -86.95 REMARK 500 HIS C 60 -36.29 71.17 REMARK 500 THR C 231 -72.73 -99.33 REMARK 500 SER C 232 -155.90 -95.87 REMARK 500 TYR C 252 -61.24 58.72 REMARK 500 ASN C 332 43.51 -152.67 REMARK 500 GLU C 357 -124.15 63.43 REMARK 500 ASN C 358 37.04 -88.48 REMARK 500 HIS D 60 -32.98 73.59 REMARK 500 ASN D 70 35.10 -99.45 REMARK 500 ASP D 187 -125.12 54.55 REMARK 500 THR D 231 -74.94 -103.56 REMARK 500 SER D 232 -155.55 -95.73 REMARK 500 TYR D 252 -62.52 54.17 REMARK 500 ASN D 298 42.90 -99.73 REMARK 500 ASP D 307 14.85 55.63 REMARK 500 ASN D 332 37.42 -151.52 REMARK 500 TYR D 346 130.59 -170.79 REMARK 500 GLU D 357 -94.70 56.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2014 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A2078 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH A2133 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH A2196 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH B2034 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH D2127 DISTANCE = 6.56 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ACY RELATED DB: PDB REMARK 900 SELENOMETHIONINE DERIVATIVE OF THE GH99 ENDO-ALPHA- MANNOSIDASE REMARK 900 FROM BACTEROIDES THETAIOTAOMICRON REMARK 900 RELATED ID: 4ACZ RELATED DB: PDB REMARK 900 STRUCTURE OF THE GH99 ENDO-ALPHA-MANNOSIDASE FROM BACTEROIDES REMARK 900 THETAIOTAOMICRON REMARK 900 RELATED ID: 4AD0 RELATED DB: PDB REMARK 900 STRUCTURE OF THE GH99 ENDO-ALPHA-MANNOSIDASE FROM BACTERIODES REMARK 900 THETAIOTAOMICRON IN COMPLEX WITH BIS-TRIS- PROPANE REMARK 900 RELATED ID: 4AD1 RELATED DB: PDB REMARK 900 STRUCTURE OF THE GH99 ENDO-ALPHA-MANNOSIDASE FROM BACTEROIDES REMARK 900 XYLANISOLVENS REMARK 900 RELATED ID: 4AD2 RELATED DB: PDB REMARK 900 STRUCTURE OF THE GH99 ENDO-ALPHA-MANNOSIDASE FROM BACTEROIDES REMARK 900 XYLANISOLVENS IN COMPLEX WITH GLUCOSE-1,3- ISOFAGOMINE REMARK 900 RELATED ID: 4AD5 RELATED DB: PDB REMARK 900 STRUCTURE OF THE GH99 ENDO-ALPHA-MANNOSIDASE FROM BACTEROIDES REMARK 900 XYLANISOLVENS IN COMPLEX WITH GLUCOSE-1,3- DEOXYMANNOJIRIMYCIN AND REMARK 900 ALPHA-1,2-MANNOBIOSE DBREF 4AD3 A 1 380 UNP D6D1V7 D6D1V7_9BACE 1 380 DBREF 4AD3 B 1 380 UNP D6D1V7 D6D1V7_9BACE 1 380 DBREF 4AD3 C 1 380 UNP D6D1V7 D6D1V7_9BACE 1 380 DBREF 4AD3 D 1 380 UNP D6D1V7 D6D1V7_9BACE 1 380 SEQRES 1 A 380 MET MET ILE PHE PHE LEU SER LEU SER LEU GLU SER CYS SEQRES 2 A 380 SER LYS GLU ASP ASP ASN ASN PRO SER ASN SER GLU ASN SEQRES 3 A 380 ASN GLY GLY ASN ASN ASN LEU GLY THR GLU LEU ASP TYR SEQRES 4 A 380 ASP THR PHE CYS PHE TYR TYR ASP TRP TYR GLY SER GLU SEQRES 5 A 380 ALA ILE ASP GLY GLN TYR ARG HIS TRP ALA HIS ALA ILE SEQRES 6 A 380 ALA PRO ASP PRO ASN GLY GLY SER GLY GLN ASN PRO GLY SEQRES 7 A 380 THR ILE PRO GLY THR GLN GLU SER ILE ALA SER ASN PHE SEQRES 8 A 380 TYR PRO GLN LEU GLY ARG TYR SER SER SER ASP PRO ASN SEQRES 9 A 380 ILE LEU THR LYS HIS MET ASP MET PHE VAL MET ALA ARG SEQRES 10 A 380 THR GLY VAL LEU ALA LEU THR TRP TRP ASN GLU GLN ASP SEQRES 11 A 380 GLU THR GLU ALA LYS ARG ILE GLY LEU ILE LEU ASP ALA SEQRES 12 A 380 ALA ASP LYS LYS LYS ILE LYS VAL CYS PHE HIS LEU GLU SEQRES 13 A 380 PRO TYR PRO SER ARG ASN VAL GLN ASN LEU ARG GLU ASN SEQRES 14 A 380 ILE VAL LYS LEU ILE THR ARG TYR GLY ASN HIS PRO ALA SEQRES 15 A 380 PHE TYR ARG LYS ASP GLY LYS PRO LEU PHE PHE ILE TYR SEQRES 16 A 380 ASP SER TYR LEU ILE GLU PRO SER GLU TRP GLU LYS LEU SEQRES 17 A 380 LEU SER PRO GLY GLY SER ILE THR ILE ARG ASN THR ALA SEQRES 18 A 380 TYR ASP ALA LEU MET ILE GLY LEU TRP THR SER SER PRO SEQRES 19 A 380 THR VAL GLN ARG PRO PHE ILE LEU ASN ALA HIS PHE ASP SEQRES 20 A 380 GLY PHE TYR THR TYR PHE ALA ALA THR GLY PHE THR TYR SEQRES 21 A 380 GLY SER THR PRO THR ASN TRP VAL SER MET GLN LYS TRP SEQRES 22 A 380 ALA LYS GLU ASN GLY LYS ILE PHE ILE PRO SER VAL GLY SEQRES 23 A 380 PRO GLY TYR ILE ASP THR ARG ILE ARG PRO TRP ASN GLY SEQRES 24 A 380 SER VAL ILE ARG THR ARG THR ASP GLY GLN TYR TYR ASP SEQRES 25 A 380 ALA MET TYR ARG LYS ALA ILE GLU ALA GLY VAL SER ALA SEQRES 26 A 380 ILE SER ILE THR SER PHE ASN GLU TRP HIS GLU GLY SER SEQRES 27 A 380 GLN ILE GLU PRO ALA VAL PRO TYR THR SER SER GLU PHE SEQRES 28 A 380 THR TYR LEU ASP TYR GLU ASN ARG GLU PRO ASP TYR TYR SEQRES 29 A 380 LEU THR ARG THR ALA TYR TRP VAL GLY LYS PHE ARG GLU SEQRES 30 A 380 SER LYS GLN SEQRES 1 B 380 MET MET ILE PHE PHE LEU SER LEU SER LEU GLU SER CYS SEQRES 2 B 380 SER LYS GLU ASP ASP ASN ASN PRO SER ASN SER GLU ASN SEQRES 3 B 380 ASN GLY GLY ASN ASN ASN LEU GLY THR GLU LEU ASP TYR SEQRES 4 B 380 ASP THR PHE CYS PHE TYR TYR ASP TRP TYR GLY SER GLU SEQRES 5 B 380 ALA ILE ASP GLY GLN TYR ARG HIS TRP ALA HIS ALA ILE SEQRES 6 B 380 ALA PRO ASP PRO ASN GLY GLY SER GLY GLN ASN PRO GLY SEQRES 7 B 380 THR ILE PRO GLY THR GLN GLU SER ILE ALA SER ASN PHE SEQRES 8 B 380 TYR PRO GLN LEU GLY ARG TYR SER SER SER ASP PRO ASN SEQRES 9 B 380 ILE LEU THR LYS HIS MET ASP MET PHE VAL MET ALA ARG SEQRES 10 B 380 THR GLY VAL LEU ALA LEU THR TRP TRP ASN GLU GLN ASP SEQRES 11 B 380 GLU THR GLU ALA LYS ARG ILE GLY LEU ILE LEU ASP ALA SEQRES 12 B 380 ALA ASP LYS LYS LYS ILE LYS VAL CYS PHE HIS LEU GLU SEQRES 13 B 380 PRO TYR PRO SER ARG ASN VAL GLN ASN LEU ARG GLU ASN SEQRES 14 B 380 ILE VAL LYS LEU ILE THR ARG TYR GLY ASN HIS PRO ALA SEQRES 15 B 380 PHE TYR ARG LYS ASP GLY LYS PRO LEU PHE PHE ILE TYR SEQRES 16 B 380 ASP SER TYR LEU ILE GLU PRO SER GLU TRP GLU LYS LEU SEQRES 17 B 380 LEU SER PRO GLY GLY SER ILE THR ILE ARG ASN THR ALA SEQRES 18 B 380 TYR ASP ALA LEU MET ILE GLY LEU TRP THR SER SER PRO SEQRES 19 B 380 THR VAL GLN ARG PRO PHE ILE LEU ASN ALA HIS PHE ASP SEQRES 20 B 380 GLY PHE TYR THR TYR PHE ALA ALA THR GLY PHE THR TYR SEQRES 21 B 380 GLY SER THR PRO THR ASN TRP VAL SER MET GLN LYS TRP SEQRES 22 B 380 ALA LYS GLU ASN GLY LYS ILE PHE ILE PRO SER VAL GLY SEQRES 23 B 380 PRO GLY TYR ILE ASP THR ARG ILE ARG PRO TRP ASN GLY SEQRES 24 B 380 SER VAL ILE ARG THR ARG THR ASP GLY GLN TYR TYR ASP SEQRES 25 B 380 ALA MET TYR ARG LYS ALA ILE GLU ALA GLY VAL SER ALA SEQRES 26 B 380 ILE SER ILE THR SER PHE ASN GLU TRP HIS GLU GLY SER SEQRES 27 B 380 GLN ILE GLU PRO ALA VAL PRO TYR THR SER SER GLU PHE SEQRES 28 B 380 THR TYR LEU ASP TYR GLU ASN ARG GLU PRO ASP TYR TYR SEQRES 29 B 380 LEU THR ARG THR ALA TYR TRP VAL GLY LYS PHE ARG GLU SEQRES 30 B 380 SER LYS GLN SEQRES 1 C 380 MET MET ILE PHE PHE LEU SER LEU SER LEU GLU SER CYS SEQRES 2 C 380 SER LYS GLU ASP ASP ASN ASN PRO SER ASN SER GLU ASN SEQRES 3 C 380 ASN GLY GLY ASN ASN ASN LEU GLY THR GLU LEU ASP TYR SEQRES 4 C 380 ASP THR PHE CYS PHE TYR TYR ASP TRP TYR GLY SER GLU SEQRES 5 C 380 ALA ILE ASP GLY GLN TYR ARG HIS TRP ALA HIS ALA ILE SEQRES 6 C 380 ALA PRO ASP PRO ASN GLY GLY SER GLY GLN ASN PRO GLY SEQRES 7 C 380 THR ILE PRO GLY THR GLN GLU SER ILE ALA SER ASN PHE SEQRES 8 C 380 TYR PRO GLN LEU GLY ARG TYR SER SER SER ASP PRO ASN SEQRES 9 C 380 ILE LEU THR LYS HIS MET ASP MET PHE VAL MET ALA ARG SEQRES 10 C 380 THR GLY VAL LEU ALA LEU THR TRP TRP ASN GLU GLN ASP SEQRES 11 C 380 GLU THR GLU ALA LYS ARG ILE GLY LEU ILE LEU ASP ALA SEQRES 12 C 380 ALA ASP LYS LYS LYS ILE LYS VAL CYS PHE HIS LEU GLU SEQRES 13 C 380 PRO TYR PRO SER ARG ASN VAL GLN ASN LEU ARG GLU ASN SEQRES 14 C 380 ILE VAL LYS LEU ILE THR ARG TYR GLY ASN HIS PRO ALA SEQRES 15 C 380 PHE TYR ARG LYS ASP GLY LYS PRO LEU PHE PHE ILE TYR SEQRES 16 C 380 ASP SER TYR LEU ILE GLU PRO SER GLU TRP GLU LYS LEU SEQRES 17 C 380 LEU SER PRO GLY GLY SER ILE THR ILE ARG ASN THR ALA SEQRES 18 C 380 TYR ASP ALA LEU MET ILE GLY LEU TRP THR SER SER PRO SEQRES 19 C 380 THR VAL GLN ARG PRO PHE ILE LEU ASN ALA HIS PHE ASP SEQRES 20 C 380 GLY PHE TYR THR TYR PHE ALA ALA THR GLY PHE THR TYR SEQRES 21 C 380 GLY SER THR PRO THR ASN TRP VAL SER MET GLN LYS TRP SEQRES 22 C 380 ALA LYS GLU ASN GLY LYS ILE PHE ILE PRO SER VAL GLY SEQRES 23 C 380 PRO GLY TYR ILE ASP THR ARG ILE ARG PRO TRP ASN GLY SEQRES 24 C 380 SER VAL ILE ARG THR ARG THR ASP GLY GLN TYR TYR ASP SEQRES 25 C 380 ALA MET TYR ARG LYS ALA ILE GLU ALA GLY VAL SER ALA SEQRES 26 C 380 ILE SER ILE THR SER PHE ASN GLU TRP HIS GLU GLY SER SEQRES 27 C 380 GLN ILE GLU PRO ALA VAL PRO TYR THR SER SER GLU PHE SEQRES 28 C 380 THR TYR LEU ASP TYR GLU ASN ARG GLU PRO ASP TYR TYR SEQRES 29 C 380 LEU THR ARG THR ALA TYR TRP VAL GLY LYS PHE ARG GLU SEQRES 30 C 380 SER LYS GLN SEQRES 1 D 380 MET MET ILE PHE PHE LEU SER LEU SER LEU GLU SER CYS SEQRES 2 D 380 SER LYS GLU ASP ASP ASN ASN PRO SER ASN SER GLU ASN SEQRES 3 D 380 ASN GLY GLY ASN ASN ASN LEU GLY THR GLU LEU ASP TYR SEQRES 4 D 380 ASP THR PHE CYS PHE TYR TYR ASP TRP TYR GLY SER GLU SEQRES 5 D 380 ALA ILE ASP GLY GLN TYR ARG HIS TRP ALA HIS ALA ILE SEQRES 6 D 380 ALA PRO ASP PRO ASN GLY GLY SER GLY GLN ASN PRO GLY SEQRES 7 D 380 THR ILE PRO GLY THR GLN GLU SER ILE ALA SER ASN PHE SEQRES 8 D 380 TYR PRO GLN LEU GLY ARG TYR SER SER SER ASP PRO ASN SEQRES 9 D 380 ILE LEU THR LYS HIS MET ASP MET PHE VAL MET ALA ARG SEQRES 10 D 380 THR GLY VAL LEU ALA LEU THR TRP TRP ASN GLU GLN ASP SEQRES 11 D 380 GLU THR GLU ALA LYS ARG ILE GLY LEU ILE LEU ASP ALA SEQRES 12 D 380 ALA ASP LYS LYS LYS ILE LYS VAL CYS PHE HIS LEU GLU SEQRES 13 D 380 PRO TYR PRO SER ARG ASN VAL GLN ASN LEU ARG GLU ASN SEQRES 14 D 380 ILE VAL LYS LEU ILE THR ARG TYR GLY ASN HIS PRO ALA SEQRES 15 D 380 PHE TYR ARG LYS ASP GLY LYS PRO LEU PHE PHE ILE TYR SEQRES 16 D 380 ASP SER TYR LEU ILE GLU PRO SER GLU TRP GLU LYS LEU SEQRES 17 D 380 LEU SER PRO GLY GLY SER ILE THR ILE ARG ASN THR ALA SEQRES 18 D 380 TYR ASP ALA LEU MET ILE GLY LEU TRP THR SER SER PRO SEQRES 19 D 380 THR VAL GLN ARG PRO PHE ILE LEU ASN ALA HIS PHE ASP SEQRES 20 D 380 GLY PHE TYR THR TYR PHE ALA ALA THR GLY PHE THR TYR SEQRES 21 D 380 GLY SER THR PRO THR ASN TRP VAL SER MET GLN LYS TRP SEQRES 22 D 380 ALA LYS GLU ASN GLY LYS ILE PHE ILE PRO SER VAL GLY SEQRES 23 D 380 PRO GLY TYR ILE ASP THR ARG ILE ARG PRO TRP ASN GLY SEQRES 24 D 380 SER VAL ILE ARG THR ARG THR ASP GLY GLN TYR TYR ASP SEQRES 25 D 380 ALA MET TYR ARG LYS ALA ILE GLU ALA GLY VAL SER ALA SEQRES 26 D 380 ILE SER ILE THR SER PHE ASN GLU TRP HIS GLU GLY SER SEQRES 27 D 380 GLN ILE GLU PRO ALA VAL PRO TYR THR SER SER GLU PHE SEQRES 28 D 380 THR TYR LEU ASP TYR GLU ASN ARG GLU PRO ASP TYR TYR SEQRES 29 D 380 LEU THR ARG THR ALA TYR TRP VAL GLY LYS PHE ARG GLU SEQRES 30 D 380 SER LYS GLN HET GLC A 500 11 HET DMJ A 501 11 HET GLC B 500 11 HET DMJ B 501 11 HET GLC C 500 11 HET DMJ C 501 11 HET GLC D 500 11 HET DMJ D 501 11 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM DMJ 1-DEOXYMANNOJIRIMYCIN HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 5 GLC 4(C6 H12 O6) FORMUL 6 DMJ 4(C6 H13 N O4) FORMUL 13 HOH *1374(H2 O) HELIX 1 1 SER A 51 GLY A 56 1 6 HELIX 2 2 ASP A 102 ARG A 117 1 16 HELIX 3 3 ASP A 130 LYS A 147 1 18 HELIX 4 4 ASN A 162 GLY A 178 1 17 HELIX 5 5 ASP A 196 ILE A 200 5 5 HELIX 6 6 GLU A 201 SER A 210 1 10 HELIX 7 7 SER A 233 HIS A 245 1 13 HELIX 8 8 THR A 263 THR A 265 5 3 HELIX 9 9 ASN A 266 ASN A 277 1 12 HELIX 10 10 ASN A 298 ILE A 302 5 5 HELIX 11 11 ARG A 305 ASP A 307 5 3 HELIX 12 12 GLY A 308 ALA A 321 1 14 HELIX 13 13 GLU A 333 GLY A 337 5 5 HELIX 14 14 ASP A 362 LYS A 379 1 18 HELIX 15 15 SER B 51 GLY B 56 1 6 HELIX 16 16 ASP B 102 ARG B 117 1 16 HELIX 17 17 THR B 132 LYS B 146 1 15 HELIX 18 18 ASN B 162 GLY B 178 1 17 HELIX 19 19 ASP B 196 ILE B 200 5 5 HELIX 20 20 GLU B 201 SER B 210 1 10 HELIX 21 21 SER B 233 HIS B 245 1 13 HELIX 22 22 THR B 263 THR B 265 5 3 HELIX 23 23 ASN B 266 ASN B 277 1 12 HELIX 24 24 ASN B 298 ILE B 302 5 5 HELIX 25 25 ARG B 305 ASP B 307 5 3 HELIX 26 26 GLY B 308 ALA B 321 1 14 HELIX 27 27 GLU B 333 GLY B 337 5 5 HELIX 28 28 ASP B 362 LYS B 379 1 18 HELIX 29 29 ASP C 102 ARG C 117 1 16 HELIX 30 30 THR C 132 LYS C 147 1 16 HELIX 31 31 ASN C 162 GLY C 178 1 17 HELIX 32 32 ASP C 196 ILE C 200 5 5 HELIX 33 33 GLU C 201 SER C 210 1 10 HELIX 34 34 SER C 233 HIS C 245 1 13 HELIX 35 35 THR C 263 THR C 265 5 3 HELIX 36 36 ASN C 266 ASN C 277 1 12 HELIX 37 37 ASN C 298 ILE C 302 5 5 HELIX 38 38 ARG C 305 ASP C 307 5 3 HELIX 39 39 GLY C 308 ALA C 321 1 14 HELIX 40 40 GLU C 333 GLY C 337 5 5 HELIX 41 41 ASP C 362 LYS C 379 1 18 HELIX 42 42 ASP D 102 ARG D 117 1 16 HELIX 43 43 GLU D 131 LYS D 146 1 16 HELIX 44 44 ASN D 162 GLY D 178 1 17 HELIX 45 45 ASP D 196 ILE D 200 5 5 HELIX 46 46 GLU D 201 SER D 210 1 10 HELIX 47 47 SER D 233 HIS D 245 1 13 HELIX 48 48 THR D 263 THR D 265 5 3 HELIX 49 49 ASN D 266 GLY D 278 1 13 HELIX 50 50 ASN D 298 ILE D 302 5 5 HELIX 51 51 ARG D 305 ASP D 307 5 3 HELIX 52 52 GLY D 308 ALA D 321 1 14 HELIX 53 53 GLU D 333 GLY D 337 5 5 HELIX 54 54 ASP D 362 LYS D 379 1 18 SHEET 1 AA 9 ILE A 280 ILE A 282 0 SHEET 2 AA 9 GLY A 248 TYR A 250 1 O PHE A 249 N ILE A 282 SHEET 3 AA 9 LEU A 225 LEU A 229 1 O GLY A 228 N TYR A 250 SHEET 4 AA 9 LEU A 191 ILE A 194 1 O PHE A 192 N ILE A 227 SHEET 5 AA 9 LYS A 150 LEU A 155 1 O PHE A 153 N PHE A 193 SHEET 6 AA 9 THR A 118 TRP A 125 1 O GLY A 119 N LYS A 150 SHEET 7 AA 9 ASP A 38 TYR A 45 1 O ASP A 38 N GLY A 119 SHEET 8 AA 9 ILE A 326 ILE A 328 1 O ILE A 326 N PHE A 42 SHEET 9 AA 9 SER A 284 VAL A 285 1 N VAL A 285 O SER A 327 SHEET 1 AB 2 ALA A 62 ALA A 64 0 SHEET 2 AB 2 THR A 79 PRO A 81 -1 O ILE A 80 N HIS A 63 SHEET 1 BA 9 ILE B 280 ILE B 282 0 SHEET 2 BA 9 GLY B 248 TYR B 250 1 O PHE B 249 N ILE B 282 SHEET 3 BA 9 LEU B 225 LEU B 229 1 O GLY B 228 N TYR B 250 SHEET 4 BA 9 LEU B 191 ILE B 194 1 O PHE B 192 N ILE B 227 SHEET 5 BA 9 LYS B 150 LEU B 155 1 O PHE B 153 N PHE B 193 SHEET 6 BA 9 THR B 118 TRP B 125 1 O GLY B 119 N LYS B 150 SHEET 7 BA 9 ASP B 38 TYR B 45 1 O ASP B 38 N GLY B 119 SHEET 8 BA 9 ILE B 326 ILE B 328 1 O ILE B 326 N PHE B 42 SHEET 9 BA 9 SER B 284 VAL B 285 1 N VAL B 285 O SER B 327 SHEET 1 BB 2 ALA B 62 ALA B 64 0 SHEET 2 BB 2 THR B 79 PRO B 81 -1 O ILE B 80 N HIS B 63 SHEET 1 CA 9 ILE C 280 ILE C 282 0 SHEET 2 CA 9 GLY C 248 TYR C 250 1 O PHE C 249 N ILE C 282 SHEET 3 CA 9 LEU C 225 LEU C 229 1 O GLY C 228 N TYR C 250 SHEET 4 CA 9 LEU C 191 ILE C 194 1 O PHE C 192 N ILE C 227 SHEET 5 CA 9 LYS C 150 LEU C 155 1 O PHE C 153 N PHE C 193 SHEET 6 CA 9 THR C 118 TRP C 125 1 O GLY C 119 N LYS C 150 SHEET 7 CA 9 ASP C 38 TYR C 45 1 O ASP C 38 N GLY C 119 SHEET 8 CA 9 ILE C 326 ILE C 328 1 O ILE C 326 N PHE C 42 SHEET 9 CA 9 SER C 284 VAL C 285 1 N VAL C 285 O SER C 327 SHEET 1 CB 2 HIS C 63 ALA C 64 0 SHEET 2 CB 2 THR C 79 ILE C 80 -1 O ILE C 80 N HIS C 63 SHEET 1 DA 9 ILE D 280 ILE D 282 0 SHEET 2 DA 9 GLY D 248 TYR D 250 1 O PHE D 249 N ILE D 282 SHEET 3 DA 9 LEU D 225 LEU D 229 1 O GLY D 228 N TYR D 250 SHEET 4 DA 9 LEU D 191 ILE D 194 1 O PHE D 192 N ILE D 227 SHEET 5 DA 9 LYS D 150 LEU D 155 1 O PHE D 153 N PHE D 193 SHEET 6 DA 9 THR D 118 TRP D 125 1 O GLY D 119 N LYS D 150 SHEET 7 DA 9 ASP D 38 TYR D 45 1 O ASP D 38 N GLY D 119 SHEET 8 DA 9 ILE D 326 ILE D 328 1 O ILE D 326 N PHE D 42 SHEET 9 DA 9 SER D 284 VAL D 285 1 N VAL D 285 O SER D 327 SHEET 1 DB 2 ALA D 62 ALA D 64 0 SHEET 2 DB 2 THR D 79 PRO D 81 -1 O ILE D 80 N HIS D 63 LINK C1 GLC A 500 O3 DMJ A 501 1555 1555 1.44 LINK C1 GLC B 500 O3 DMJ B 501 1555 1555 1.45 LINK C1 GLC C 500 O3 DMJ C 501 1555 1555 1.43 LINK C1 GLC D 500 O3 DMJ D 501 1555 1555 1.43 CISPEP 1 THR A 329 SER A 330 0 5.89 CISPEP 2 THR B 329 SER B 330 0 9.09 CISPEP 3 THR C 329 SER C 330 0 3.82 CISPEP 4 THR D 329 SER D 330 0 1.34 CRYST1 222.478 222.478 84.715 90.00 90.00 120.00 P 31 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004495 0.002595 0.000000 0.00000 SCALE2 0.000000 0.005190 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011804 0.00000