HEADER TRANSFERASE 23-DEC-11 4ADE TITLE STRUCTURAL AND FUNCTIONAL STUDY OF SUCCINYL-ORNITHINE TRANSAMINASE TITLE 2 FROM E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCCINYLORNITHINE TRANSAMINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SOAT, CARBON STARVATION PROTEIN C, SUCCINYLORNITHINE COMPND 5 AMINOTRANSFERASE; COMPND 6 EC: 2.6.1.17, 2.6.1.81 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 511693; SOURCE 4 STRAIN: BL21 KEYWDS TRANSFERASE, PLP ENZYMES, AMINOTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.NEWMAN,T.S.PEAT REVDAT 4 20-DEC-23 4ADE 1 REMARK REVDAT 3 06-MAR-19 4ADE 1 REMARK REVDAT 2 27-MAR-13 4ADE 1 JRNL REVDAT 1 16-JAN-13 4ADE 0 JRNL AUTH J.NEWMAN,S.SEABROOK,R.SURJADI,C.C.WILLIAMS,D.LUCENT, JRNL AUTH 2 M.WILDING,C.SCOTT,T.S.PEAT JRNL TITL DETERMINATION OF THE STRUCTURE OF THE CATABOLIC JRNL TITL 2 N-SUCCINYLORNITHINE TRANSAMINASE (ASTC) FROM ESCHERICHIA JRNL TITL 3 COLI. JRNL REF PLOS ONE V. 8 58298 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23484010 JRNL DOI 10.1371/JOURNAL.PONE.0058298 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 115.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 27740 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1480 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1996 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5682 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 60 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.83000 REMARK 3 B22 (A**2) : 1.83000 REMARK 3 B33 (A**2) : -2.74000 REMARK 3 B12 (A**2) : 0.91000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.482 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.258 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.177 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.937 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5841 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7931 ; 1.803 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 754 ; 6.643 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 275 ;38.271 ;23.927 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 895 ;18.201 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;19.308 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 873 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4552 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT. U VALUES REFINED INDIVIDUALLY. REMARK 4 REMARK 4 4ADE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-DEC-11. REMARK 100 THE DEPOSITION ID IS D_1290050790. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95369 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29220 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 19.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 22.10 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 22.40 REMARK 200 R MERGE FOR SHELL (I) : 0.72000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2PB2 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4 M SODIUM MALONATE PH 7, 10% (V/V) REMARK 280 MMT (MALATE-MES-TRIS) BUFFER AT PH 5.0, AT 293K WITH A PROTEIN REMARK 280 TO CRYSTALLANT RATIO OF 3:1 IN THE PRESENCE OF SILVER BULLET REMARK 280 SCREEN NUMBER 62. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 115.73450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 66.81934 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 36.80533 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 115.73450 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 66.81934 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 36.80533 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 115.73450 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 66.81934 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 36.80533 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 115.73450 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 66.81934 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 36.80533 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 115.73450 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 66.81934 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 36.80533 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 115.73450 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 66.81934 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 36.80533 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 133.63869 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 73.61067 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 133.63869 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 73.61067 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 133.63869 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 73.61067 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 133.63869 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 73.61067 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 133.63869 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 73.61067 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 133.63869 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 73.61067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 -115.73450 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 66.81934 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 36.80533 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 -115.73450 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 66.81934 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 147.22133 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2022 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2001 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ARG A 403 REMARK 465 GLY A 404 REMARK 465 SER A 405 REMARK 465 SER A 406 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLN B 3 REMARK 465 PRO B 4 REMARK 465 ILE B 5 REMARK 465 THR B 6 REMARK 465 ARG B 7 REMARK 465 GLU B 8 REMARK 465 ASN B 9 REMARK 465 PHE B 10 REMARK 465 ASP B 11 REMARK 465 GLU B 12 REMARK 465 TRP B 13 REMARK 465 MET B 14 REMARK 465 ILE B 15 REMARK 465 PRO B 16 REMARK 465 VAL B 17 REMARK 465 TYR B 18 REMARK 465 ALA B 19 REMARK 465 PRO B 20 REMARK 465 THR B 142 REMARK 465 LEU B 143 REMARK 465 PHE B 144 REMARK 465 THR B 145 REMARK 465 VAL B 146 REMARK 465 SER B 147 REMARK 465 ALA B 148 REMARK 465 GLY B 149 REMARK 465 GLY B 150 REMARK 465 GLN B 151 REMARK 465 PRO B 152 REMARK 465 ALA B 153 REMARK 465 TYR B 154 REMARK 465 SER B 155 REMARK 465 GLN B 156 REMARK 465 ASP B 157 REMARK 465 PHE B 158 REMARK 465 ALA B 159 REMARK 465 PRO B 160 REMARK 465 LEU B 161 REMARK 465 PRO B 162 REMARK 465 ALA B 163 REMARK 465 THR B 274 REMARK 465 VAL B 275 REMARK 465 GLY B 276 REMARK 465 THR B 277 REMARK 465 HIS B 278 REMARK 465 GLY B 279 REMARK 465 THR B 280 REMARK 465 THR B 281 REMARK 465 TYR B 282 REMARK 465 GLY B 283 REMARK 465 ARG B 403 REMARK 465 GLY B 404 REMARK 465 SER B 405 REMARK 465 SER B 406 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 141 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 164 CG OD1 OD2 REMARK 470 MET B 273 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 57 CG HIS A 57 CD2 0.054 REMARK 500 HIS A 121 CG HIS A 121 CD2 0.056 REMARK 500 TRP B 72 CE2 TRP B 72 CD2 0.073 REMARK 500 HIS B 240 CG HIS B 240 CD2 0.058 REMARK 500 HIS B 399 CG HIS B 399 CD2 0.062 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 19 77.98 -104.68 REMARK 500 ILE A 48 58.90 70.17 REMARK 500 LYS A 70 -62.47 -96.21 REMARK 500 ALA A 133 -167.60 -122.99 REMARK 500 GLU A 224 37.99 -95.05 REMARK 500 ALA A 251 -152.02 -161.54 REMARK 500 LYS A 252 -106.47 66.52 REMARK 500 ALA A 368 69.72 -153.58 REMARK 500 ILE B 48 69.94 76.34 REMARK 500 ALA B 49 25.60 49.52 REMARK 500 LYS B 70 -77.18 -103.44 REMARK 500 HIS B 73 128.12 -175.23 REMARK 500 GLU B 110 -82.94 -49.71 REMARK 500 ALA B 111 -60.74 -12.24 REMARK 500 ARG B 123 -8.63 169.72 REMARK 500 TYR B 124 2.83 -151.84 REMARK 500 ALA B 133 -168.77 -104.26 REMARK 500 ASN B 136 -4.29 82.84 REMARK 500 ASP B 181 -161.10 -123.91 REMARK 500 ALA B 251 -164.81 -169.93 REMARK 500 LYS B 252 -110.47 74.05 REMARK 500 ARG B 271 1.07 -60.29 REMARK 500 VAL B 272 53.77 -102.56 REMARK 500 VAL B 401 8.41 -52.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ADB RELATED DB: PDB REMARK 900 STRUCTURAL AND FUNCTIONAL STUDY OF SUCCINYL-ORNITHINE TRANSAMINASE REMARK 900 FROM E. COLI REMARK 900 RELATED ID: 4ADD RELATED DB: PDB REMARK 900 STRUCTURAL AND FUNCTIONAL STUDY OF SUCCINYL-ORNITHINE TRANSAMINASE REMARK 900 FROM E. COLI REMARK 900 RELATED ID: 4ADC RELATED DB: PDB REMARK 900 STRUCTURAL AND FUNCTIONAL STUDY OF SUCCINYL-ORNITHINE TRANSAMINASE REMARK 900 FROM E. COLI DBREF 4ADE A 1 406 UNP P77581 ASTC_ECOLI 1 406 DBREF 4ADE B 1 406 UNP P77581 ASTC_ECOLI 1 406 SEQRES 1 A 406 MET SER GLN PRO ILE THR ARG GLU ASN PHE ASP GLU TRP SEQRES 2 A 406 MET ILE PRO VAL TYR ALA PRO ALA PRO PHE ILE PRO VAL SEQRES 3 A 406 ARG GLY GLU GLY SER ARG LEU TRP ASP GLN GLN GLY LYS SEQRES 4 A 406 GLU TYR ILE ASP PHE ALA GLY GLY ILE ALA VAL ASN ALA SEQRES 5 A 406 LEU GLY HIS ALA HIS PRO GLU LEU ARG GLU ALA LEU ASN SEQRES 6 A 406 GLU GLN ALA SER LYS PHE TRP HIS THR GLY ASN GLY TYR SEQRES 7 A 406 THR ASN GLU PRO VAL LEU ARG LEU ALA LYS LYS LEU ILE SEQRES 8 A 406 ASP ALA THR PHE ALA ASP ARG VAL PHE PHE CYS ASN SER SEQRES 9 A 406 GLY ALA GLU ALA ASN GLU ALA ALA LEU LYS LEU ALA ARG SEQRES 10 A 406 LYS PHE ALA HIS ASP ARG TYR GLY SER HIS LYS SER GLY SEQRES 11 A 406 ILE VAL ALA PHE LYS ASN ALA PHE HIS GLY ARG THR LEU SEQRES 12 A 406 PHE THR VAL SER ALA GLY GLY GLN PRO ALA TYR SER GLN SEQRES 13 A 406 ASP PHE ALA PRO LEU PRO ALA ASP ILE ARG HIS ALA ALA SEQRES 14 A 406 TYR ASN ASP ILE ASN SER ALA SER ALA LEU ILE ASP ASP SEQRES 15 A 406 SER THR CYS ALA VAL ILE VAL GLU PRO ILE GLN GLY GLU SEQRES 16 A 406 GLY GLY VAL VAL PRO ALA SER ASN ALA PHE LEU GLN GLY SEQRES 17 A 406 LEU ARG GLU LEU CYS ASN ARG HIS ASN ALA LEU LEU ILE SEQRES 18 A 406 PHE ASP GLU VAL GLN THR GLY VAL GLY ARG THR GLY GLU SEQRES 19 A 406 LEU TYR ALA TYR MET HIS TYR GLY VAL THR PRO ASP LEU SEQRES 20 A 406 LEU THR THR ALA LYS ALA LEU GLY GLY GLY PHE PRO VAL SEQRES 21 A 406 GLY ALA LEU LEU ALA THR GLU GLU CYS ALA ARG VAL MET SEQRES 22 A 406 THR VAL GLY THR HIS GLY THR THR TYR GLY GLY ASN PRO SEQRES 23 A 406 LEU ALA SER ALA VAL ALA GLY LYS VAL LEU GLU LEU ILE SEQRES 24 A 406 ASN THR PRO GLU MET LEU ASN GLY VAL LYS GLN ARG HIS SEQRES 25 A 406 ASP TRP PHE VAL GLU ARG LEU ASN THR ILE ASN HIS ARG SEQRES 26 A 406 TYR GLY LEU PHE SER GLU VAL ARG GLY LEU GLY LEU LEU SEQRES 27 A 406 ILE GLY CYS VAL LEU ASN ALA ASP TYR ALA GLY GLN ALA SEQRES 28 A 406 LYS GLN ILE SER GLN GLU ALA ALA LYS ALA GLY VAL MET SEQRES 29 A 406 VAL LEU ILE ALA GLY GLY ASN VAL VAL ARG PHE ALA PRO SEQRES 30 A 406 ALA LEU ASN VAL SER GLU GLU GLU VAL THR THR GLY LEU SEQRES 31 A 406 ASP ARG PHE ALA ALA ALA CYS GLU HIS PHE VAL SER ARG SEQRES 32 A 406 GLY SER SER SEQRES 1 B 406 MET SER GLN PRO ILE THR ARG GLU ASN PHE ASP GLU TRP SEQRES 2 B 406 MET ILE PRO VAL TYR ALA PRO ALA PRO PHE ILE PRO VAL SEQRES 3 B 406 ARG GLY GLU GLY SER ARG LEU TRP ASP GLN GLN GLY LYS SEQRES 4 B 406 GLU TYR ILE ASP PHE ALA GLY GLY ILE ALA VAL ASN ALA SEQRES 5 B 406 LEU GLY HIS ALA HIS PRO GLU LEU ARG GLU ALA LEU ASN SEQRES 6 B 406 GLU GLN ALA SER LYS PHE TRP HIS THR GLY ASN GLY TYR SEQRES 7 B 406 THR ASN GLU PRO VAL LEU ARG LEU ALA LYS LYS LEU ILE SEQRES 8 B 406 ASP ALA THR PHE ALA ASP ARG VAL PHE PHE CYS ASN SER SEQRES 9 B 406 GLY ALA GLU ALA ASN GLU ALA ALA LEU LYS LEU ALA ARG SEQRES 10 B 406 LYS PHE ALA HIS ASP ARG TYR GLY SER HIS LYS SER GLY SEQRES 11 B 406 ILE VAL ALA PHE LYS ASN ALA PHE HIS GLY ARG THR LEU SEQRES 12 B 406 PHE THR VAL SER ALA GLY GLY GLN PRO ALA TYR SER GLN SEQRES 13 B 406 ASP PHE ALA PRO LEU PRO ALA ASP ILE ARG HIS ALA ALA SEQRES 14 B 406 TYR ASN ASP ILE ASN SER ALA SER ALA LEU ILE ASP ASP SEQRES 15 B 406 SER THR CYS ALA VAL ILE VAL GLU PRO ILE GLN GLY GLU SEQRES 16 B 406 GLY GLY VAL VAL PRO ALA SER ASN ALA PHE LEU GLN GLY SEQRES 17 B 406 LEU ARG GLU LEU CYS ASN ARG HIS ASN ALA LEU LEU ILE SEQRES 18 B 406 PHE ASP GLU VAL GLN THR GLY VAL GLY ARG THR GLY GLU SEQRES 19 B 406 LEU TYR ALA TYR MET HIS TYR GLY VAL THR PRO ASP LEU SEQRES 20 B 406 LEU THR THR ALA LYS ALA LEU GLY GLY GLY PHE PRO VAL SEQRES 21 B 406 GLY ALA LEU LEU ALA THR GLU GLU CYS ALA ARG VAL MET SEQRES 22 B 406 THR VAL GLY THR HIS GLY THR THR TYR GLY GLY ASN PRO SEQRES 23 B 406 LEU ALA SER ALA VAL ALA GLY LYS VAL LEU GLU LEU ILE SEQRES 24 B 406 ASN THR PRO GLU MET LEU ASN GLY VAL LYS GLN ARG HIS SEQRES 25 B 406 ASP TRP PHE VAL GLU ARG LEU ASN THR ILE ASN HIS ARG SEQRES 26 B 406 TYR GLY LEU PHE SER GLU VAL ARG GLY LEU GLY LEU LEU SEQRES 27 B 406 ILE GLY CYS VAL LEU ASN ALA ASP TYR ALA GLY GLN ALA SEQRES 28 B 406 LYS GLN ILE SER GLN GLU ALA ALA LYS ALA GLY VAL MET SEQRES 29 B 406 VAL LEU ILE ALA GLY GLY ASN VAL VAL ARG PHE ALA PRO SEQRES 30 B 406 ALA LEU ASN VAL SER GLU GLU GLU VAL THR THR GLY LEU SEQRES 31 B 406 ASP ARG PHE ALA ALA ALA CYS GLU HIS PHE VAL SER ARG SEQRES 32 B 406 GLY SER SER FORMUL 3 HOH *60(H2 O) HELIX 1 1 THR A 6 MET A 14 1 9 HELIX 2 2 ALA A 45 VAL A 50 1 6 HELIX 3 3 HIS A 57 SER A 69 1 13 HELIX 4 4 ASN A 80 THR A 94 1 15 HELIX 5 5 SER A 104 TYR A 124 1 21 HELIX 6 6 THR A 142 GLY A 149 1 8 HELIX 7 7 GLN A 151 GLN A 156 1 6 HELIX 8 8 ASP A 157 ALA A 159 5 3 HELIX 9 9 ASP A 172 ILE A 180 1 9 HELIX 10 10 SER A 202 ASN A 217 1 16 HELIX 11 11 TYR A 236 GLY A 242 1 7 HELIX 12 12 ALA A 251 GLY A 256 5 6 HELIX 13 13 THR A 266 ARG A 271 1 6 HELIX 14 14 ASN A 285 ASN A 300 1 16 HELIX 15 15 THR A 301 GLY A 327 1 27 HELIX 16 16 ALA A 345 ALA A 348 5 4 HELIX 17 17 GLN A 350 GLY A 362 1 13 HELIX 18 18 SER A 382 SER A 402 1 21 HELIX 19 19 ALA B 45 VAL B 50 1 6 HELIX 20 20 HIS B 57 SER B 69 1 13 HELIX 21 21 ASN B 80 THR B 94 1 15 HELIX 22 22 SER B 104 ASP B 122 1 19 HELIX 23 23 ASP B 172 ALA B 178 1 7 HELIX 24 24 SER B 202 ASN B 217 1 16 HELIX 25 25 TYR B 236 GLY B 242 1 7 HELIX 26 26 ALA B 253 GLY B 256 5 4 HELIX 27 27 THR B 266 ARG B 271 1 6 HELIX 28 28 ASN B 285 ASN B 300 1 16 HELIX 29 29 THR B 301 GLY B 327 1 27 HELIX 30 30 ALA B 345 ALA B 348 5 4 HELIX 31 31 GLN B 350 ALA B 361 1 12 HELIX 32 32 SER B 382 VAL B 401 1 20 SHEET 1 AA 4 PRO A 25 GLU A 29 0 SHEET 2 AA 4 ARG A 32 ASP A 35 -1 O ARG A 32 N GLU A 29 SHEET 3 AA 4 GLU A 40 ASP A 43 -1 O TYR A 41 N LEU A 33 SHEET 4 AA 4 VAL A 363 MET A 364 1 N MET A 364 O ILE A 42 SHEET 1 AB 7 ARG A 98 CYS A 102 0 SHEET 2 AB 7 GLY A 261 ALA A 265 -1 O GLY A 261 N CYS A 102 SHEET 3 AB 7 LEU A 247 THR A 250 -1 O LEU A 248 N LEU A 264 SHEET 4 AB 7 LEU A 219 ASP A 223 1 O PHE A 222 N THR A 249 SHEET 5 AB 7 THR A 184 VAL A 189 1 O CYS A 185 N LEU A 219 SHEET 6 AB 7 GLY A 130 PHE A 134 1 O GLY A 130 N CYS A 185 SHEET 7 AB 7 ILE A 165 ALA A 168 1 O ARG A 166 N ALA A 133 SHEET 1 AC 2 ILE A 192 GLN A 193 0 SHEET 2 AC 2 VAL A 199 PRO A 200 -1 O VAL A 199 N GLN A 193 SHEET 1 AD 4 PHE A 329 LEU A 335 0 SHEET 2 AD 4 LEU A 338 LEU A 343 -1 O LEU A 338 N LEU A 335 SHEET 3 AD 4 VAL A 372 PHE A 375 -1 O VAL A 373 N CYS A 341 SHEET 4 AD 4 LEU A 366 ILE A 367 -1 O LEU A 366 N ARG A 374 SHEET 1 BA 4 PRO B 25 GLU B 29 0 SHEET 2 BA 4 ARG B 32 ASP B 35 -1 O ARG B 32 N GLU B 29 SHEET 3 BA 4 GLU B 40 ASP B 43 -1 O TYR B 41 N LEU B 33 SHEET 4 BA 4 VAL B 363 MET B 364 1 N MET B 364 O ILE B 42 SHEET 1 BB 7 ARG B 98 CYS B 102 0 SHEET 2 BB 7 GLY B 261 ALA B 265 -1 O GLY B 261 N CYS B 102 SHEET 3 BB 7 LEU B 247 ALA B 251 -1 O LEU B 248 N LEU B 264 SHEET 4 BB 7 LEU B 219 ASP B 223 1 O PHE B 222 N THR B 249 SHEET 5 BB 7 THR B 184 VAL B 189 1 O CYS B 185 N LEU B 219 SHEET 6 BB 7 GLY B 130 PHE B 134 1 O GLY B 130 N CYS B 185 SHEET 7 BB 7 ILE B 165 ALA B 168 1 O ARG B 166 N ALA B 133 SHEET 1 BC 2 ILE B 192 GLN B 193 0 SHEET 2 BC 2 VAL B 199 PRO B 200 -1 O VAL B 199 N GLN B 193 SHEET 1 BD 4 PHE B 329 ARG B 333 0 SHEET 2 BD 4 ILE B 339 LEU B 343 -1 O GLY B 340 N ARG B 333 SHEET 3 BD 4 VAL B 372 PHE B 375 -1 O VAL B 373 N CYS B 341 SHEET 4 BD 4 LEU B 366 ILE B 367 -1 O LEU B 366 N ARG B 374 CISPEP 1 ALA A 159 PRO A 160 0 5.66 CRYST1 231.469 231.469 110.416 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004320 0.002494 0.000000 0.00000 SCALE2 0.000000 0.004989 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009057 0.00000