HEADER CELL ADHESION 18-JAN-12 4AF9 TITLE CRYSTAL STRUCTURE OF EPITHELIAL ADHESIN 1 A DOMAIN (EPA1A) FROM TITLE 2 CANDIDA GLABRATA IN COMPLEX WITH GALB1-3GLC COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPA1P; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ADHESION DOMAIN (A DOMAIN), RESIDUES 31-271; COMPND 5 SYNONYM: EPITHELIAL ADHESIN 1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDA GLABRATA; SOURCE 3 ORGANISM_TAXID: 5478; SOURCE 4 STRAIN: CBS138; SOURCE 5 ATCC: 2001; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 37762; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: SHUFFLE T7 EXPRESS (C3029); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS CELL ADHESION, LECTIN, TISSUE INVASION, PATHOGENICITY EXPDTA X-RAY DIFFRACTION AUTHOR M.MAESTRE-REYNA,R.DIDERRICH,M.S.VEELDERS,G.EULENBURG,V.KALUGIN, AUTHOR 2 S.BRUECKNER,P.KELLER,S.RUPP,H.-U.MOESCH,L.-O.ESSEN REVDAT 6 09-OCT-24 4AF9 1 REMARK REVDAT 5 20-DEC-23 4AF9 1 REMARK REVDAT 4 29-JUL-20 4AF9 1 COMPND REMARK HETNAM HETSYN REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 01-JUL-20 4AF9 1 LINK REVDAT 2 31-OCT-12 4AF9 1 JRNL REVDAT 1 17-OCT-12 4AF9 0 JRNL AUTH M.MAESTRE-REYNA,R.DIDERRICH,M.S.VEELDERS,G.EULENBURG, JRNL AUTH 2 V.KALUGIN,S.BRUCKNER,P.KELLER,S.RUPP,H.MOSCH,L.ESSEN JRNL TITL STRUCTURAL BASIS FOR PROMISCUITY AND SPECIFICITY DURING JRNL TITL 2 CANDIDA GLABRATA INVASION OF HOST EPITHELIA. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 16864 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 23035251 JRNL DOI 10.1073/PNAS.1207653109 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 41751 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1498 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3023 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 111 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1809 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 271 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.37000 REMARK 3 B22 (A**2) : 0.44000 REMARK 3 B33 (A**2) : -0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.062 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.557 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2064 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1397 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2837 ; 1.601 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3413 ; 0.956 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 267 ; 6.645 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 94 ;32.833 ;23.511 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 306 ;13.962 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;10.267 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 304 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2319 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 455 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1219 ; 1.604 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 484 ; 0.544 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1987 ; 2.467 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 845 ; 2.127 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 831 ; 3.114 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 39 A 266 REMARK 3 ORIGIN FOR THE GROUP (A): 35.9810 16.5360 1.8050 REMARK 3 T TENSOR REMARK 3 T11: 0.0232 T22: 0.0092 REMARK 3 T33: 0.0171 T12: 0.0020 REMARK 3 T13: 0.0072 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.9876 L22: 0.5502 REMARK 3 L33: 0.7513 L12: -0.2594 REMARK 3 L13: 0.2252 L23: -0.3078 REMARK 3 S TENSOR REMARK 3 S11: -0.0249 S12: -0.0192 S13: -0.0472 REMARK 3 S21: 0.0012 S22: 0.0325 S23: 0.0161 REMARK 3 S31: -0.0076 S32: -0.0558 S33: -0.0076 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 4AF9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1290050702. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : DIAMOND AND GE FILTER REMARK 200 OPTICS : TOROIDAL MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43249 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 19.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.66000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2XJP REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.5, 0.2 M AMMONIUM REMARK 280 SULFATE, 0.025 M LACTOSE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.89500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.89500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.32000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.16500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.32000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.16500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.89500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.32000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.16500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 34.89500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.32000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.16500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2093 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2141 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 SER A 20 REMARK 465 SER A 21 REMARK 465 GLY A 22 REMARK 465 LEU A 23 REMARK 465 VAL A 24 REMARK 465 PRO A 25 REMARK 465 ARG A 26 REMARK 465 GLY A 27 REMARK 465 SER A 28 REMARK 465 HIS A 29 REMARK 465 MET A 30 REMARK 465 THR A 31 REMARK 465 SER A 32 REMARK 465 SER A 33 REMARK 465 ASN A 34 REMARK 465 ASP A 35 REMARK 465 ILE A 36 REMARK 465 SER A 37 REMARK 465 LEU A 38 REMARK 465 TYR A 268 REMARK 465 ASP A 269 REMARK 465 SER A 270 REMARK 465 SER A 271 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 72 CG CD CE NZ REMARK 470 LYS A 201 CG CD CE NZ REMARK 470 LYS A 204 CG CD CE NZ REMARK 470 SER A 267 CA C O CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2202 O HOH A 2224 1.90 REMARK 500 O SER A 200 O HOH A 2207 1.92 REMARK 500 O HOH A 2223 O HOH A 2224 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 78 CB CYS A 78 SG -0.107 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 69 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 53 -163.41 -78.19 REMARK 500 ASP A 53 -160.65 -78.19 REMARK 500 PRO A 133 30.22 -92.19 REMARK 500 ASN A 140 98.00 -160.31 REMARK 500 ALA A 176 -64.92 -91.52 REMARK 500 ALA A 203 41.84 -83.26 REMARK 500 TYR A 228 -142.12 61.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 B-D-GALACTOSE (GAL): BUILDS GALB1-3GLC WITH GLUCOSE. REMARK 600 ALPHA-D-GLUCOSE (GLC): BUILDS GALB1-3GLC WITH GALACTOSE. IS REMARK 600 A MIXTURE OF ALPHA AND BETA GLUCOSE REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1267 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 164 OD1 REMARK 620 2 ASP A 165 OD2 81.2 REMARK 620 3 ASN A 225 OD1 110.3 71.1 REMARK 620 4 GLU A 227 O 165.7 112.6 79.0 REMARK 620 5 ASP A 229 O 81.8 138.4 79.9 89.4 REMARK 620 6 GAL B 2 O3 93.0 70.9 131.0 88.4 147.8 REMARK 620 7 GAL B 2 O4 75.5 131.0 157.8 91.9 79.8 68.1 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4A3X RELATED DB: PDB REMARK 900 STRUCTURE OF THE N-TERMINAL DOMAIN OF THE EPA1 ADHESIN (EPA1-NP) REMARK 900 FROM THE PATHOGENIC YEAST CANDIDA GLABRATA, IN COMPLEX WITH CALCIUM REMARK 900 AND LACTOSE REMARK 900 RELATED ID: 4AFA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SUBTYPE-SWITCHED EPITHELIAL ADHESIN 1 TO 2 A REMARK 900 DOMAIN (EPA1TO2A) FROM CANDIDA GLABRATA IN COMPLEX WITH GLYCEROL REMARK 900 RELATED ID: 4AFB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SUBTYPE-SWITCHED EPITHELIAL ADHESIN 1 TO 3 A REMARK 900 DOMAIN (EPA1TO3A) FROM CANDIDA GLABRATA IN COMPLEX WITH GLYCEROL REMARK 900 RELATED ID: 4AFC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SUBTYPE-SWITCHED EPITHELIAL ADHESIN 1 TO 6 A REMARK 900 DOMAIN (EPA1TO6A) FROM CANDIDA GLABRATA IN COMPLEX WITH GALB1-3GLC REMARK 900 RELATED ID: 4ASL RELATED DB: PDB REMARK 900 STRUCTURE OF EPA1A IN COMPLEX WITH THE T-ANTIGEN ( GAL-B1-3-GALNAC) REMARK 999 REMARK 999 SEQUENCE REMARK 999 WE WORKED WITH THE N-TERMINAL ADHESIVE DOMAIN OF EPA1A, REMARK 999 WHILE Q6VBJ0 PRESENTS THE ENTIRE SEQUENCE. WE USED Q6VBJ0 REMARK 999 SEQUENCE NUMBERING THROUGHOUT THE PRESENT WORK. DBREF 4AF9 A 31 271 UNP Q6VBJ0 Q6VBJ0_CANGB 31 271 SEQADV 4AF9 MET A 10 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AF9 GLY A 11 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AF9 SER A 12 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AF9 SER A 13 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AF9 HIS A 14 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AF9 HIS A 15 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AF9 HIS A 16 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AF9 HIS A 17 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AF9 HIS A 18 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AF9 HIS A 19 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AF9 SER A 20 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AF9 SER A 21 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AF9 GLY A 22 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AF9 LEU A 23 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AF9 VAL A 24 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AF9 PRO A 25 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AF9 ARG A 26 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AF9 GLY A 27 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AF9 SER A 28 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AF9 HIS A 29 UNP Q6VBJ0 EXPRESSION TAG SEQADV 4AF9 MET A 30 UNP Q6VBJ0 EXPRESSION TAG SEQRES 1 A 262 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 262 LEU VAL PRO ARG GLY SER HIS MET THR SER SER ASN ASP SEQRES 3 A 262 ILE SER LEU ALA SER LYS ASP PRO THR THR PHE PRO LEU SEQRES 4 A 262 GLY CYS SER PRO ASP ILE THR THR PRO LYS LYS GLY LEU SEQRES 5 A 262 SER MET GLU LEU TYR SER TYR ASP PHE ARG LYS LYS GLY SEQRES 6 A 262 SER TYR PRO CYS TRP ASP ALA ALA TYR LEU ASP PRO ASN SEQRES 7 A 262 TYR PRO ARG THR GLY TYR LYS SER HIS ARG LEU LEU ALA SEQRES 8 A 262 LYS VAL ASP GLY VAL THR GLY ASN ILE ASN PHE TYR TYR SEQRES 9 A 262 HIS ALA THR LYS GLY CYS THR PRO GLN LEU GLY HIS LEU SEQRES 10 A 262 PRO ALA SER TYR ASN TYR PRO LYS PRO LEU THR MET THR SEQRES 11 A 262 ASN PHE THR MET LEU LEU TYR GLY TYR PHE ARG PRO LYS SEQRES 12 A 262 VAL THR GLY PHE HIS THR PHE THR ILE SER ALA ASP ASP SEQRES 13 A 262 LEU LEU PHE VAL ASN PHE GLY ALA GLY ASN ALA PHE ASP SEQRES 14 A 262 CYS CYS ARG ARG ASP SER SER ALA ASP HIS PHE GLY ASN SEQRES 15 A 262 TYR GLN ALA TYR ALA ILE TRP GLY SER LYS THR ALA LYS SEQRES 16 A 262 ASP GLU LEU THR VAL HIS LEU ASP ALA GLY VAL TYR TYR SEQRES 17 A 262 PRO ILE ARG LEU PHE TYR ASN ASN ARG GLU TYR ASP GLY SEQRES 18 A 262 ALA LEU SER PHE THR PHE LYS THR GLU SER ASN GLU ASN SEQRES 19 A 262 THR VAL SER ASP PHE SER GLU TYR PHE PHE SER LEU ASP SEQRES 20 A 262 ASP THR GLU GLU GLY CYS PRO GLY LEU ILE SER TYR ASP SEQRES 21 A 262 SER SER HET BGC B 1 12 HET GLC B 1 12 HET GAL B 2 11 HET CA A1267 1 HET GOL A1268 6 HET GOL A1269 6 HET PEG A1270 9 HET GOL A1274 6 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 BGC C6 H12 O6 FORMUL 2 GLC C6 H12 O6 FORMUL 2 GAL C6 H12 O6 FORMUL 3 CA CA 2+ FORMUL 4 GOL 3(C3 H8 O3) FORMUL 6 PEG C4 H10 O3 FORMUL 8 HOH *271(H2 O) HELIX 1 1 ASP A 80 ASP A 85 5 6 HELIX 2 2 THR A 91 HIS A 96 5 6 HELIX 3 3 PRO A 127 ASN A 131 5 5 HELIX 4 4 ARG A 181 ALA A 186 1 6 HELIX 5 5 ASP A 187 PHE A 189 5 3 SHEET 1 AA 6 LYS A 58 LYS A 59 0 SHEET 2 AA 6 PHE A 252 SER A 254 -1 O SER A 254 N LYS A 58 SHEET 3 AA 6 PHE A 141 PHE A 149 1 O TYR A 148 N PHE A 253 SHEET 4 AA 6 TYR A 217 ASN A 225 -1 O TYR A 217 N PHE A 149 SHEET 5 AA 6 LEU A 166 PHE A 171 -1 O LEU A 166 N ASN A 224 SHEET 6 AA 6 ALA A 194 ILE A 197 -1 O ALA A 194 N VAL A 169 SHEET 1 AB 5 LYS A 58 LYS A 59 0 SHEET 2 AB 5 PHE A 252 SER A 254 -1 O SER A 254 N LYS A 58 SHEET 3 AB 5 PHE A 141 PHE A 149 1 O TYR A 148 N PHE A 253 SHEET 4 AB 5 LEU A 61 SER A 67 -1 O SER A 62 N TYR A 146 SHEET 5 AB 5 LEU A 98 VAL A 105 -1 N LEU A 99 O LEU A 65 SHEET 1 AC 4 PHE A 111 TYR A 113 0 SHEET 2 AC 4 GLY A 230 THR A 238 -1 O GLY A 230 N TYR A 113 SHEET 3 AC 4 GLY A 155 ASP A 164 -1 O THR A 158 N LYS A 237 SHEET 4 AC 4 LYS A 204 LEU A 211 -1 O ASP A 205 N ILE A 161 SHEET 1 AD 2 LEU A 123 GLY A 124 0 SHEET 2 AD 2 LEU A 136 THR A 137 -1 O LEU A 136 N GLY A 124 SSBOND 1 CYS A 50 CYS A 179 1555 1555 2.04 SSBOND 2 CYS A 78 CYS A 119 1555 1555 2.05 SSBOND 3 CYS A 180 CYS A 262 1555 1555 2.05 LINK O3 ABGC B 1 C1 GAL B 2 1555 1555 1.44 LINK O3 BGLC B 1 C1 GAL B 2 1555 1555 1.44 LINK OD1 ASP A 164 CA CA A1267 1555 1555 2.38 LINK OD2 ASP A 165 CA CA A1267 1555 1555 2.44 LINK OD1 ASN A 225 CA CA A1267 1555 1555 2.34 LINK O GLU A 227 CA CA A1267 1555 1555 2.37 LINK O ASP A 229 CA CA A1267 1555 1555 2.38 LINK CA CA A1267 O3 GAL B 2 1555 1555 2.36 LINK CA CA A1267 O4 GAL B 2 1555 1555 2.42 CISPEP 1 TYR A 76 PRO A 77 0 -8.29 CISPEP 2 ASP A 164 ASP A 165 0 7.42 CRYST1 74.640 104.330 69.790 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013398 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009585 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014329 0.00000