HEADER HYDROLASE 23-JAN-12 4AFY TITLE CRYSTAL STRUCTURE OF THE FIMX EAL DOMAIN IN COMPLEX WITH REACTION TITLE 2 PRODUCT PGPG COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIMX; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: EAL DOMAIN, RESIDUES 439-691; COMPND 5 EC: 3.1.4.52; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-R(*GP*GP)-3'; COMPND 9 CHAIN: C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA PAO1; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 GENE: PA4959; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET15B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS HYDROLASE, CDIGMP BIOFILM, PHOSPHODIESTERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.ROBERT-PAGANIN,S.NONIN-LECOMTE,S.RETY REVDAT 4 20-DEC-23 4AFY 1 REMARK LINK REVDAT 3 21-OCT-15 4AFY 1 SOURCE REVDAT 2 30-JAN-13 4AFY 1 JRNL REVDAT 1 09-JAN-13 4AFY 0 JRNL AUTH J.ROBERT-PAGANIN,S.NONIN-LECOMTE,S.RETY JRNL TITL CRYSTAL STRUCTURE OF AN EAL DOMAIN IN COMPLEX WITH REACTION JRNL TITL 2 PRODUCT 5'-PGPG JRNL REF PLOS ONE V. 7 52424 2012 JRNL REFN ESSN 1932-6203 JRNL PMID 23285035 JRNL DOI 10.1371/JOURNAL.PONE.0052424 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 57230 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2890 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.2185 - 5.5420 1.00 2837 140 0.2217 0.2330 REMARK 3 2 5.5420 - 4.4002 1.00 2669 149 0.1742 0.2053 REMARK 3 3 4.4002 - 3.8444 1.00 2636 151 0.1734 0.1906 REMARK 3 4 3.8444 - 3.4931 1.00 2620 133 0.2038 0.2447 REMARK 3 5 3.4931 - 3.2428 1.00 2583 166 0.2091 0.2423 REMARK 3 6 3.2428 - 3.0517 1.00 2573 147 0.2087 0.2225 REMARK 3 7 3.0517 - 2.8989 1.00 2599 134 0.2191 0.2517 REMARK 3 8 2.8989 - 2.7727 1.00 2584 135 0.2098 0.2343 REMARK 3 9 2.7727 - 2.6660 1.00 2566 146 0.2169 0.2411 REMARK 3 10 2.6660 - 2.5740 1.00 2575 150 0.2115 0.2612 REMARK 3 11 2.5740 - 2.4935 1.00 2531 145 0.2220 0.2725 REMARK 3 12 2.4935 - 2.4222 1.00 2556 149 0.2203 0.2774 REMARK 3 13 2.4222 - 2.3585 1.00 2572 132 0.2351 0.2628 REMARK 3 14 2.3585 - 2.3009 1.00 2589 114 0.2168 0.3132 REMARK 3 15 2.3009 - 2.2486 1.00 2561 119 0.2246 0.2805 REMARK 3 16 2.2486 - 2.2008 1.00 2549 136 0.2389 0.2869 REMARK 3 17 2.2008 - 2.1568 1.00 2566 136 0.2433 0.3225 REMARK 3 18 2.1568 - 2.1161 1.00 2537 123 0.2421 0.2806 REMARK 3 19 2.1161 - 2.0783 1.00 2573 118 0.2486 0.3036 REMARK 3 20 2.0783 - 2.0430 1.00 2554 126 0.2478 0.2971 REMARK 3 21 2.0430 - 2.0101 0.99 2510 141 0.2794 0.2905 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 44.99 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.52630 REMARK 3 B22 (A**2) : 0.52630 REMARK 3 B33 (A**2) : -1.05260 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 4097 REMARK 3 ANGLE : 1.407 5581 REMARK 3 CHIRALITY : 0.077 639 REMARK 3 PLANARITY : 0.007 708 REMARK 3 DIHEDRAL : 15.952 1503 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4AFY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JAN-12. REMARK 100 THE DEPOSITION ID IS D_1290051017. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57232 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: PDB ENTRY 2R6O REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES 0.1 M PH 8.0, NAH2PO4 0.8 M REMARK 280 K2HPO4 0.8 M, PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.12000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.16500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.16500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 115.68000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.16500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.16500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.56000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.16500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.16500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 115.68000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.16500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.16500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.56000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 77.12000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2055 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2037 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 418 REMARK 465 GLY A 419 REMARK 465 SER A 420 REMARK 465 SER A 421 REMARK 465 HIS A 422 REMARK 465 HIS A 423 REMARK 465 HIS A 424 REMARK 465 HIS A 425 REMARK 465 HIS A 426 REMARK 465 HIS A 427 REMARK 465 SER A 428 REMARK 465 SER A 429 REMARK 465 GLY A 430 REMARK 465 LEU A 431 REMARK 465 VAL A 432 REMARK 465 PRO A 433 REMARK 465 ARG A 434 REMARK 465 GLY A 435 REMARK 465 SER A 436 REMARK 465 HIS A 437 REMARK 465 SER A 688 REMARK 465 GLY A 689 REMARK 465 ASP A 690 REMARK 465 GLU A 691 REMARK 465 MET B 418 REMARK 465 GLY B 419 REMARK 465 SER B 420 REMARK 465 SER B 421 REMARK 465 HIS B 422 REMARK 465 HIS B 423 REMARK 465 HIS B 424 REMARK 465 HIS B 425 REMARK 465 HIS B 426 REMARK 465 HIS B 427 REMARK 465 SER B 428 REMARK 465 SER B 429 REMARK 465 GLY B 430 REMARK 465 LEU B 431 REMARK 465 VAL B 432 REMARK 465 PRO B 433 REMARK 465 ARG B 434 REMARK 465 GLY B 435 REMARK 465 SER B 436 REMARK 465 SER B 688 REMARK 465 GLY B 689 REMARK 465 ASP B 690 REMARK 465 GLU B 691 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 687 CA C O CB OG REMARK 470 SER B 687 CA C O CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 640 O HOH A 2104 1.87 REMARK 500 O HOH B 2102 O HOH B 2114 1.88 REMARK 500 O GLY B 468 O HOH B 2024 1.89 REMARK 500 O HOH A 2112 O HOH A 2121 1.93 REMARK 500 OE1 GLN B 448 O HOH B 2010 1.96 REMARK 500 O HOH B 2048 O HOH B 2098 1.98 REMARK 500 O HOH A 2009 O HOH A 2040 2.06 REMARK 500 O HOH B 2069 O HOH B 2070 2.06 REMARK 500 OE2 GLU A 560 O HOH A 2059 2.06 REMARK 500 OE1 GLU B 560 O HOH B 2072 2.07 REMARK 500 O SER B 470 O HOH B 2026 2.08 REMARK 500 O HOH B 2056 O HOH B 2100 2.10 REMARK 500 O HOH B 2006 O HOH B 2010 2.10 REMARK 500 O HOH B 2094 O HOH B 2100 2.10 REMARK 500 OD1 ASP A 624 O HOH A 2091 2.12 REMARK 500 OG SER B 595 O3' G D 2 2.12 REMARK 500 OE2 GLU A 475 OP1 G C 2 2.13 REMARK 500 O HOH B 2020 O HOH B 2118 2.13 REMARK 500 O HOH C 2002 O HOH C 2004 2.15 REMARK 500 O SER A 455 O HOH A 2013 2.17 REMARK 500 O ASN A 602 O HOH A 2079 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2119 O HOH B 2115 6545 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G C 1 N7 - C8 - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 G C 1 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 G D 2 C5 - C6 - O6 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 456 162.71 -48.17 REMARK 500 LYS A 524 -166.86 -79.34 REMARK 500 ASP B 469 126.04 -25.42 REMARK 500 ALA B 523 -11.11 -48.37 REMARK 500 GLN B 596 44.70 37.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS B 471 GLU B 472 147.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 442 OD2 REMARK 620 2 HOH A2010 O 113.1 REMARK 620 3 HOH A2135 O 120.7 124.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 801 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 461 OE1 REMARK 620 2 GLU A 475 OE1 107.5 REMARK 620 3 HOH A2134 O 116.8 115.6 REMARK 620 4 G C 1 O5' 104.9 112.4 99.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 803 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 582 O REMARK 620 2 THR A 611 O 105.4 REMARK 620 3 HOH A2072 O 103.2 111.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 804 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 661 O REMARK 620 2 HOH B2117 O 116.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 801 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 461 OE1 REMARK 620 2 GLU B 475 OE1 110.7 REMARK 620 3 HOH B2125 O 122.4 115.7 REMARK 620 4 G D 1 O5' 105.7 104.9 93.7 REMARK 620 N 1 2 3 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 801 DBREF 4AFY A 439 691 UNP Q02F59 Q02F59_PSEAB 439 691 DBREF 4AFY B 439 691 UNP Q02F59 Q02F59_PSEAB 439 691 DBREF 4AFY C 1 2 PDB 4AFY 4AFY 1 2 DBREF 4AFY D 1 2 PDB 4AFY 4AFY 1 2 SEQADV 4AFY MET A 418 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY GLY A 419 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY SER A 420 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY SER A 421 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY HIS A 422 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY HIS A 423 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY HIS A 424 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY HIS A 425 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY HIS A 426 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY HIS A 427 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY SER A 428 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY SER A 429 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY GLY A 430 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY LEU A 431 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY VAL A 432 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY PRO A 433 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY ARG A 434 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY GLY A 435 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY SER A 436 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY HIS A 437 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY MET A 438 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY MET B 418 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY GLY B 419 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY SER B 420 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY SER B 421 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY HIS B 422 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY HIS B 423 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY HIS B 424 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY HIS B 425 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY HIS B 426 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY HIS B 427 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY SER B 428 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY SER B 429 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY GLY B 430 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY LEU B 431 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY VAL B 432 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY PRO B 433 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY ARG B 434 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY GLY B 435 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY SER B 436 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY HIS B 437 UNP Q02F59 EXPRESSION TAG SEQADV 4AFY MET B 438 UNP Q02F59 EXPRESSION TAG SEQRES 1 A 274 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 274 LEU VAL PRO ARG GLY SER HIS MET GLN ARG GLY ASP VAL SEQRES 3 A 274 ILE ALA ILE LEU GLN GLN ALA LEU GLU THR ASN SER PHE SEQRES 4 A 274 ARG LEU LEU PHE GLN PRO VAL ILE SER LEU ARG GLY ASP SEQRES 5 A 274 SER HIS GLU ASN TYR GLU VAL LEU LEU ARG LEU LEU ASN SEQRES 6 A 274 PRO GLN GLY GLN GLU VAL PRO PRO ALA GLU PHE LEU HIS SEQRES 7 A 274 ALA ALA LYS GLU ALA GLY LEU ALA GLU LYS ILE ASP ARG SEQRES 8 A 274 TRP VAL ILE LEU ASN SER ILE LYS LEU LEU ALA GLU HIS SEQRES 9 A 274 ARG ALA LYS GLY HIS GLN THR LYS LEU PHE VAL HIS LEU SEQRES 10 A 274 SER SER ALA SER LEU GLN ASP PRO GLY LEU LEU PRO TRP SEQRES 11 A 274 LEU GLY VAL ALA LEU LYS ALA ALA ARG LEU PRO PRO GLU SEQRES 12 A 274 SER LEU VAL PHE GLN ILE SER GLU ALA ASP ALA THR SER SEQRES 13 A 274 TYR LEU LYS GLN ALA LYS GLN LEU THR GLN GLY LEU ALA SEQRES 14 A 274 THR LEU HIS CYS GLN ALA ALA ILE SER GLN PHE GLY CYS SEQRES 15 A 274 SER LEU ASN PRO PHE ASN ALA LEU LYS HIS LEU THR VAL SEQRES 16 A 274 GLN PHE ILE LYS ILE ASP GLY SER PHE VAL GLN ASP LEU SEQRES 17 A 274 ASN GLN VAL GLU ASN GLN GLU ILE LEU LYS GLY LEU ILE SEQRES 18 A 274 ALA GLU LEU HIS GLU GLN GLN LYS LEU SER ILE VAL PRO SEQRES 19 A 274 PHE VAL GLU SER ALA SER VAL LEU ALA THR LEU TRP GLN SEQRES 20 A 274 ALA GLY ALA THR TYR ILE GLN GLY TYR TYR LEU GLN GLY SEQRES 21 A 274 PRO SER GLN ALA MET ASP TYR ASP PHE SER SER GLY ASP SEQRES 22 A 274 GLU SEQRES 1 B 274 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 274 LEU VAL PRO ARG GLY SER HIS MET GLN ARG GLY ASP VAL SEQRES 3 B 274 ILE ALA ILE LEU GLN GLN ALA LEU GLU THR ASN SER PHE SEQRES 4 B 274 ARG LEU LEU PHE GLN PRO VAL ILE SER LEU ARG GLY ASP SEQRES 5 B 274 SER HIS GLU ASN TYR GLU VAL LEU LEU ARG LEU LEU ASN SEQRES 6 B 274 PRO GLN GLY GLN GLU VAL PRO PRO ALA GLU PHE LEU HIS SEQRES 7 B 274 ALA ALA LYS GLU ALA GLY LEU ALA GLU LYS ILE ASP ARG SEQRES 8 B 274 TRP VAL ILE LEU ASN SER ILE LYS LEU LEU ALA GLU HIS SEQRES 9 B 274 ARG ALA LYS GLY HIS GLN THR LYS LEU PHE VAL HIS LEU SEQRES 10 B 274 SER SER ALA SER LEU GLN ASP PRO GLY LEU LEU PRO TRP SEQRES 11 B 274 LEU GLY VAL ALA LEU LYS ALA ALA ARG LEU PRO PRO GLU SEQRES 12 B 274 SER LEU VAL PHE GLN ILE SER GLU ALA ASP ALA THR SER SEQRES 13 B 274 TYR LEU LYS GLN ALA LYS GLN LEU THR GLN GLY LEU ALA SEQRES 14 B 274 THR LEU HIS CYS GLN ALA ALA ILE SER GLN PHE GLY CYS SEQRES 15 B 274 SER LEU ASN PRO PHE ASN ALA LEU LYS HIS LEU THR VAL SEQRES 16 B 274 GLN PHE ILE LYS ILE ASP GLY SER PHE VAL GLN ASP LEU SEQRES 17 B 274 ASN GLN VAL GLU ASN GLN GLU ILE LEU LYS GLY LEU ILE SEQRES 18 B 274 ALA GLU LEU HIS GLU GLN GLN LYS LEU SER ILE VAL PRO SEQRES 19 B 274 PHE VAL GLU SER ALA SER VAL LEU ALA THR LEU TRP GLN SEQRES 20 B 274 ALA GLY ALA THR TYR ILE GLN GLY TYR TYR LEU GLN GLY SEQRES 21 B 274 PRO SER GLN ALA MET ASP TYR ASP PHE SER SER GLY ASP SEQRES 22 B 274 GLU SEQRES 1 C 2 G G SEQRES 1 D 2 G G HET MG A 801 1 HET MG A 802 1 HET NA A 803 1 HET NA A 804 1 HET MG B 801 1 HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION FORMUL 5 MG 3(MG 2+) FORMUL 7 NA 2(NA 1+) FORMUL 10 HOH *268(H2 O) HELIX 1 1 ASP A 442 ASN A 454 1 13 HELIX 2 2 PRO A 489 ALA A 500 1 12 HELIX 3 3 LEU A 502 ARG A 522 1 21 HELIX 4 4 SER A 535 GLN A 540 1 6 HELIX 5 5 GLY A 543 ARG A 556 1 14 HELIX 6 6 GLU A 568 TYR A 574 1 7 HELIX 7 7 TYR A 574 LEU A 588 1 15 HELIX 8 8 PHE A 604 LYS A 608 5 5 HELIX 9 9 GLY A 619 GLN A 623 5 5 HELIX 10 10 GLN A 627 GLN A 644 1 18 HELIX 11 11 SER A 655 GLY A 666 1 12 HELIX 12 12 ASP B 442 ASN B 454 1 13 HELIX 13 13 PRO B 489 ALA B 500 1 12 HELIX 14 14 LEU B 502 ARG B 522 1 21 HELIX 15 15 SER B 535 ASP B 541 1 7 HELIX 16 16 GLY B 543 ARG B 556 1 14 HELIX 17 17 GLU B 568 TYR B 574 1 7 HELIX 18 18 TYR B 574 LEU B 588 1 15 HELIX 19 19 ASN B 602 HIS B 609 1 8 HELIX 20 20 GLY B 619 GLN B 623 5 5 HELIX 21 21 GLN B 627 GLN B 644 1 18 HELIX 22 22 SER B 655 ALA B 665 1 11 SHEET 1 AA 9 ARG A 457 SER A 465 0 SHEET 2 AA 9 GLU A 472 ARG A 479 -1 O ASN A 473 N VAL A 463 SHEET 3 AA 9 THR A 528 HIS A 533 1 O LYS A 529 N TYR A 474 SHEET 4 AA 9 LEU A 562 SER A 567 1 O VAL A 563 N VAL A 532 SHEET 5 AA 9 GLN A 591 PHE A 597 1 O GLN A 591 N PHE A 564 SHEET 6 AA 9 PHE A 614 ILE A 617 1 O PHE A 614 N ILE A 594 SHEET 7 AA 9 LEU A 647 VAL A 650 1 O LEU A 647 N ILE A 615 SHEET 8 AA 9 TYR A 669 ILE A 670 1 O TYR A 669 N VAL A 650 SHEET 9 AA 9 ARG A 457 SER A 465 -1 O ILE A 464 N ILE A 670 SHEET 1 BA 2 PHE B 456 PRO B 462 0 SHEET 2 BA 2 GLU B 472 LEU B 481 -1 O GLU B 475 N GLN B 461 SHEET 1 BB 9 ILE B 464 SER B 465 0 SHEET 2 BB 9 TYR B 669 ILE B 670 -1 O ILE B 670 N ILE B 464 SHEET 3 BB 9 LEU B 647 VAL B 650 1 O SER B 648 N TYR B 669 SHEET 4 BB 9 PHE B 614 ILE B 617 1 O ILE B 615 N ILE B 649 SHEET 5 BB 9 GLN B 591 PHE B 597 1 O ILE B 594 N LYS B 616 SHEET 6 BB 9 LEU B 562 SER B 567 1 O LEU B 562 N GLN B 591 SHEET 7 BB 9 THR B 528 HIS B 533 1 O LEU B 530 N VAL B 563 SHEET 8 BB 9 GLU B 472 LEU B 481 1 O GLU B 472 N LYS B 529 SHEET 9 BB 9 GLU B 487 VAL B 488 1 O VAL B 488 N LEU B 480 SHEET 1 BC 9 ILE B 464 SER B 465 0 SHEET 2 BC 9 TYR B 669 ILE B 670 -1 O ILE B 670 N ILE B 464 SHEET 3 BC 9 LEU B 647 VAL B 650 1 O SER B 648 N TYR B 669 SHEET 4 BC 9 PHE B 614 ILE B 617 1 O ILE B 615 N ILE B 649 SHEET 5 BC 9 GLN B 591 PHE B 597 1 O ILE B 594 N LYS B 616 SHEET 6 BC 9 LEU B 562 SER B 567 1 O LEU B 562 N GLN B 591 SHEET 7 BC 9 THR B 528 HIS B 533 1 O LEU B 530 N VAL B 563 SHEET 8 BC 9 GLU B 472 LEU B 481 1 O GLU B 472 N LYS B 529 SHEET 9 BC 9 PHE B 456 PRO B 462 -1 O ARG B 457 N ARG B 479 SHEET 1 BD 2 GLU B 487 VAL B 488 0 SHEET 2 BD 2 GLU B 472 LEU B 481 1 O LEU B 480 N VAL B 488 LINK OD2 ASP A 442 MG MG A 802 1555 1555 2.74 LINK OE1 GLN A 461 MG MG A 801 1555 1555 2.90 LINK OE1 GLU A 475 MG MG A 801 1555 1555 2.64 LINK O THR A 582 NA NA A 803 1555 1555 2.82 LINK O THR A 611 NA NA A 803 1555 1555 2.68 LINK O THR A 661 NA NA A 804 1555 1555 2.83 LINK MG MG A 801 O HOH A2134 1555 1555 2.71 LINK MG MG A 801 O5' G C 1 1555 1555 2.78 LINK MG MG A 802 O HOH A2010 1555 1555 2.85 LINK MG MG A 802 O HOH A2135 1555 1555 2.07 LINK NA NA A 803 O HOH A2072 1555 1555 2.20 LINK NA NA A 804 O HOH B2117 1555 6545 2.95 LINK OE1 GLN B 461 MG MG B 801 1555 1555 2.91 LINK OE1 GLU B 475 MG MG B 801 1555 1555 2.68 LINK MG MG B 801 O HOH B2125 1555 1555 2.71 LINK MG MG B 801 O5' G D 1 1555 1555 2.93 SITE 1 AC1 6 GLN A 461 GLU A 475 GLN A 671 HOH A2134 SITE 2 AC1 6 G C 1 G C 2 SITE 1 AC2 3 ASP A 442 HOH A2010 HOH A2135 SITE 1 AC3 4 THR A 582 ALA A 592 THR A 611 HOH A2072 SITE 1 AC4 5 LYS A 635 THR A 661 GLN A 664 ALA A 665 SITE 2 AC4 5 HOH B2117 SITE 1 AC5 6 GLN B 461 GLU B 475 GLN B 671 HOH B2125 SITE 2 AC5 6 G D 1 G D 2 CRYST1 104.330 104.330 154.240 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009585 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009585 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006483 0.00000