HEADER TRANSFERASE 01-FEB-12 4AGW TITLE DISCOVERY OF A SMALL MOLECULE TYPE II INHIBITOR OF WILD-TYPE AND TITLE 2 GATEKEEPER MUTANTS OF BCR-ABL, PDGFRALPHA, KIT, AND SRC KINASES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTO-ONCOGENE TYROSINE-PROTEIN KINASE SRC; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: KINASE DOMAIN, RESIDUES 251-533; COMPND 5 SYNONYM: SRC KINASE, PROTO-ONCOGENE C-SRC, PP60C-SRC, P60-SRC; COMPND 6 EC: 2.7.10.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_TAXID: 9031; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ATP-BINDING, LIPOPROTEIN, MYRISTATE, PHOSPHOPROTEIN, SH2 DOMAIN, SH3 KEYWDS 2 DOMAIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.WEISBERG,H.G.CHOI,M.SEELIGER,N.GRAY,J.D.GRIFFIN REVDAT 4 08-MAY-24 4AGW 1 REMARK REVDAT 3 28-APR-21 4AGW 1 COMPND REMARK HETNAM REVDAT 2 27-FEB-19 4AGW 1 REMARK REVDAT 1 15-FEB-12 4AGW 0 JRNL AUTH E.WEISBERG,H.G.CHOI,A.RAY,R.BARRETT,J.ZHANG,T.SIM,W.ZHOU, JRNL AUTH 2 M.SEELIGER,M.CAMERON,M.AZAM,J.A.FLETCHER,M.DEBIEC-RYCHTER, JRNL AUTH 3 M.MAYEDA,D.MORENO,A.L.KUNG,P.A.JANNE,R.KHOSRAVI-FAR, JRNL AUTH 4 J.V.MELO,P.W.MANLEY,S.ADAMIA,C.WU,N.GRAY,J.D.GRIFFIN JRNL TITL DISCOVERY OF A SMALL-MOLECULE TYPE II INHIBITOR OF WILD-TYPE JRNL TITL 2 AND GATEKEEPER MUTANTS OF BCR-ABL, PDGFRALPHA, KIT, AND SRC JRNL TITL 3 KINASES: NOVEL TYPE II INHIBITOR OF GATEKEEPER MUTANTS. JRNL REF BLOOD V. 115 4206 2010 JRNL REFN ISSN 0006-4971 JRNL PMID 20299508 JRNL DOI 10.1182/BLOOD-2009-11-251751 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.100 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 3 NUMBER OF REFLECTIONS : 19430 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1547 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.2727 - 5.7780 0.99 1743 148 0.2180 0.2455 REMARK 3 2 5.7780 - 4.5879 0.98 1710 155 0.2115 0.2728 REMARK 3 3 4.5879 - 4.0085 0.97 1736 147 0.1871 0.2203 REMARK 3 4 4.0085 - 3.6422 0.97 1697 149 0.2164 0.2495 REMARK 3 5 3.6422 - 3.3813 0.96 1669 154 0.2261 0.2651 REMARK 3 6 3.3813 - 3.1820 0.93 1645 139 0.2256 0.2826 REMARK 3 7 3.1820 - 3.0227 0.93 1662 142 0.2230 0.2919 REMARK 3 8 3.0227 - 2.8912 0.91 1567 139 0.2376 0.2785 REMARK 3 9 2.8912 - 2.7799 0.87 1557 125 0.2532 0.3060 REMARK 3 10 2.7799 - 2.6840 0.83 1444 127 0.2704 0.3573 REMARK 3 11 2.6840 - 2.6001 0.81 1453 122 0.2790 0.3235 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 30.26 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.27690 REMARK 3 B22 (A**2) : -3.56870 REMARK 3 B33 (A**2) : 11.84560 REMARK 3 B12 (A**2) : -0.14090 REMARK 3 B13 (A**2) : -0.05180 REMARK 3 B23 (A**2) : 7.21380 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4378 REMARK 3 ANGLE : 1.570 5938 REMARK 3 CHIRALITY : 0.132 621 REMARK 3 PLANARITY : 0.011 755 REMARK 3 DIHEDRAL : 18.715 1689 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 335:405 OR RESSEQ REMARK 3 425:533 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 335:405 OR RESSEQ REMARK 3 425:533 ) REMARK 3 ATOM PAIRS NUMBER : 1457 REMARK 3 RMSD : 0.088 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4AGW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1290051123. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19430 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN CONCENTRATION 0.3 MM INHIBITOR REMARK 280 CONCENTRATION 0.5 MM METHOD HANGING DROP VAPOR DIFFUSION AT 298 REMARK 280 K PROTEIN BUFFER 5 % DMSO, 20 MM TRIS PH 8.0, 250 MM NACL, 5 % REMARK 280 GLYCEROL, 1 MM DTT. MOTHER LIQUOR: 100 MM MES PH 6.5, 7.5 % PEG REMARK 280 3350, 10 % GLYCEROL, 1 MM DTT, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 248 REMARK 465 HIS A 249 REMARK 465 MET A 250 REMARK 465 GLN A 251 REMARK 465 THR A 252 REMARK 465 GLN A 253 REMARK 465 GLY A 254 REMARK 465 LEU A 255 REMARK 465 ALA A 256 REMARK 465 GLY A 406 REMARK 465 LEU A 407 REMARK 465 ALA A 408 REMARK 465 ARG A 409 REMARK 465 LEU A 410 REMARK 465 ILE A 411 REMARK 465 GLU A 412 REMARK 465 ASP A 413 REMARK 465 ASN A 414 REMARK 465 GLU A 415 REMARK 465 TYR A 416 REMARK 465 THR A 417 REMARK 465 ALA A 418 REMARK 465 ARG A 419 REMARK 465 GLN A 420 REMARK 465 GLY A 421 REMARK 465 ALA A 422 REMARK 465 LYS A 423 REMARK 465 PHE A 424 REMARK 465 GLY B 248 REMARK 465 HIS B 249 REMARK 465 MET B 250 REMARK 465 GLN B 251 REMARK 465 THR B 252 REMARK 465 GLN B 253 REMARK 465 GLY B 254 REMARK 465 LEU B 255 REMARK 465 ALA B 256 REMARK 465 LYS B 257 REMARK 465 GLY B 406 REMARK 465 LEU B 407 REMARK 465 ALA B 408 REMARK 465 ARG B 409 REMARK 465 LEU B 410 REMARK 465 ILE B 411 REMARK 465 GLU B 412 REMARK 465 ASP B 413 REMARK 465 ASN B 414 REMARK 465 GLU B 415 REMARK 465 TYR B 416 REMARK 465 THR B 417 REMARK 465 ALA B 418 REMARK 465 ARG B 419 REMARK 465 GLN B 420 REMARK 465 GLY B 421 REMARK 465 ALA B 422 REMARK 465 LYS B 423 REMARK 465 PHE B 424 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE ARG A 460 OD2 ASP B 518 1.95 REMARK 500 OE1 GLU A 486 O HOH A 2060 2.11 REMARK 500 O PHE A 515 O HOH A 2066 2.15 REMARK 500 NH1 ARG A 477 O HOH A 2049 2.17 REMARK 500 OG SER B 522 O HOH A 2041 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 359 CD - NE - CZ ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG A 359 NE - CZ - NH1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG A 359 NE - CZ - NH2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ARG A 379 CD - NE - CZ ANGL. DEV. = 9.6 DEGREES REMARK 500 ARG A 379 NE - CZ - NH1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG A 379 NE - CZ - NH2 ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG A 385 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 385 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 388 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 388 NE - CZ - NH2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ARG A 506 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 506 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG B 359 CD - NE - CZ ANGL. DEV. = 8.6 DEGREES REMARK 500 ARG B 359 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG B 359 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG B 379 CD - NE - CZ ANGL. DEV. = 8.4 DEGREES REMARK 500 ARG B 379 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG B 379 NE - CZ - NH2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG B 385 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 385 NE - CZ - NH2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG B 388 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG B 388 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG B 506 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 506 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 302 125.62 -170.04 REMARK 500 ARG A 385 -10.06 87.50 REMARK 500 ASP A 386 33.61 -147.94 REMARK 500 LEU A 398 19.33 56.24 REMARK 500 TYR A 463 64.57 60.34 REMARK 500 PRO A 485 124.04 -39.02 REMARK 500 GLU A 489 -38.76 -38.60 REMARK 500 THR A 521 -61.86 -101.76 REMARK 500 VAL B 323 122.08 -36.55 REMARK 500 ARG B 385 -8.89 85.27 REMARK 500 ASP B 386 34.18 -148.47 REMARK 500 LEU B 398 19.91 55.64 REMARK 500 TYR B 463 64.24 62.06 REMARK 500 PRO B 485 125.18 -39.67 REMARK 500 THR B 521 -61.29 -104.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2038 DISTANCE = 7.42 ANGSTROMS REMARK 525 HOH B2033 DISTANCE = 6.45 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NG7 A 1534 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 1535 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1536 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NG7 B 1534 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B 1535 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PRM RELATED DB: PDB REMARK 900 C-SRC (SH3 DOMAIN) COMPLEXED WITH THE PROLINE-RICH LIGAND PLR1 REMARK 900 (AFAPPLPRR) (NMR, MINIMIZED AVERAGE STRUCTURE) REMARK 900 RELATED ID: 1PRL RELATED DB: PDB REMARK 900 C-SRC (SH3 DOMAIN) COMPLEXED WITH THE PROLINE-RICH LIGAND PLR1 REMARK 900 (AFAPPLPRR) (NMR, 16 STRUCTURES) REMARK 900 RELATED ID: 1RLQ RELATED DB: PDB REMARK 900 C-SRC (SH3 DOMAIN) COMPLEXED WITH THE PROLINE-RICH LIGAND RLP2 REMARK 900 (RALPPLPRY) (NMR, MINIMIZED AVERAGE STRUCTURE) REMARK 900 RELATED ID: 1F1W RELATED DB: PDB REMARK 900 SRC SH2 THREF1TRP MUTANT COMPLEXED WITH THE PHOSPHOPEPTIDE PYVNV REMARK 900 RELATED ID: 1P13 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SRC SH2 DOMAIN COMPLEXED WITHPEPTIDE REMARK 900 (SDPYANFK) REMARK 900 RELATED ID: 1SRL RELATED DB: PDB REMARK 900 RELATED ID: 2PTK RELATED DB: PDB REMARK 900 CHICKEN SRC TYROSINE KINASE REMARK 900 RELATED ID: 1SRM RELATED DB: PDB REMARK 900 RELATED ID: 1F2F RELATED DB: PDB REMARK 900 SRC SH2 THREF1TRP MUTANT REMARK 900 RELATED ID: 1RLP RELATED DB: PDB REMARK 900 C-SRC (SH3 DOMAIN) COMPLEXED WITH THE PROLINE-RICH LIGAND RLP2 REMARK 900 (RALPPLPRY) (NMR, 16 STRUCTURES) REMARK 900 RELATED ID: 1NLP RELATED DB: PDB REMARK 900 STRUCTURE OF SIGNAL TRANSDUCTION PROTEIN, NMR, MINIMIZEDAVERAGE REMARK 900 STRUCTURE REMARK 900 RELATED ID: 1NLO RELATED DB: PDB REMARK 900 STRUCTURE OF SIGNAL TRANSDUCTION PROTEIN, NMR, MINIMIZEDAVERAGE REMARK 900 STRUCTURE DBREF 4AGW A 251 533 UNP P00523 SRC_CHICK 251 533 DBREF 4AGW B 251 533 UNP P00523 SRC_CHICK 251 533 SEQADV 4AGW GLY A 248 UNP P00523 EXPRESSION TAG SEQADV 4AGW HIS A 249 UNP P00523 EXPRESSION TAG SEQADV 4AGW MET A 250 UNP P00523 EXPRESSION TAG SEQADV 4AGW GLY B 248 UNP P00523 EXPRESSION TAG SEQADV 4AGW HIS B 249 UNP P00523 EXPRESSION TAG SEQADV 4AGW MET B 250 UNP P00523 EXPRESSION TAG SEQRES 1 A 286 GLY HIS MET GLN THR GLN GLY LEU ALA LYS ASP ALA TRP SEQRES 2 A 286 GLU ILE PRO ARG GLU SER LEU ARG LEU GLU VAL LYS LEU SEQRES 3 A 286 GLY GLN GLY CYS PHE GLY GLU VAL TRP MET GLY THR TRP SEQRES 4 A 286 ASN GLY THR THR ARG VAL ALA ILE LYS THR LEU LYS PRO SEQRES 5 A 286 GLY THR MET SER PRO GLU ALA PHE LEU GLN GLU ALA GLN SEQRES 6 A 286 VAL MET LYS LYS LEU ARG HIS GLU LYS LEU VAL GLN LEU SEQRES 7 A 286 TYR ALA VAL VAL SER GLU GLU PRO ILE TYR ILE VAL THR SEQRES 8 A 286 GLU TYR MET SER LYS GLY SER LEU LEU ASP PHE LEU LYS SEQRES 9 A 286 GLY GLU MET GLY LYS TYR LEU ARG LEU PRO GLN LEU VAL SEQRES 10 A 286 ASP MET ALA ALA GLN ILE ALA SER GLY MET ALA TYR VAL SEQRES 11 A 286 GLU ARG MET ASN TYR VAL HIS ARG ASP LEU ARG ALA ALA SEQRES 12 A 286 ASN ILE LEU VAL GLY GLU ASN LEU VAL CYS LYS VAL ALA SEQRES 13 A 286 ASP PHE GLY LEU ALA ARG LEU ILE GLU ASP ASN GLU TYR SEQRES 14 A 286 THR ALA ARG GLN GLY ALA LYS PHE PRO ILE LYS TRP THR SEQRES 15 A 286 ALA PRO GLU ALA ALA LEU TYR GLY ARG PHE THR ILE LYS SEQRES 16 A 286 SER ASP VAL TRP SER PHE GLY ILE LEU LEU THR GLU LEU SEQRES 17 A 286 THR THR LYS GLY ARG VAL PRO TYR PRO GLY MET VAL ASN SEQRES 18 A 286 ARG GLU VAL LEU ASP GLN VAL GLU ARG GLY TYR ARG MET SEQRES 19 A 286 PRO CYS PRO PRO GLU CYS PRO GLU SER LEU HIS ASP LEU SEQRES 20 A 286 MET CYS GLN CYS TRP ARG LYS ASP PRO GLU GLU ARG PRO SEQRES 21 A 286 THR PHE GLU TYR LEU GLN ALA PHE LEU GLU ASP TYR PHE SEQRES 22 A 286 THR SER THR GLU PRO GLN TYR GLN PRO GLY GLU ASN LEU SEQRES 1 B 286 GLY HIS MET GLN THR GLN GLY LEU ALA LYS ASP ALA TRP SEQRES 2 B 286 GLU ILE PRO ARG GLU SER LEU ARG LEU GLU VAL LYS LEU SEQRES 3 B 286 GLY GLN GLY CYS PHE GLY GLU VAL TRP MET GLY THR TRP SEQRES 4 B 286 ASN GLY THR THR ARG VAL ALA ILE LYS THR LEU LYS PRO SEQRES 5 B 286 GLY THR MET SER PRO GLU ALA PHE LEU GLN GLU ALA GLN SEQRES 6 B 286 VAL MET LYS LYS LEU ARG HIS GLU LYS LEU VAL GLN LEU SEQRES 7 B 286 TYR ALA VAL VAL SER GLU GLU PRO ILE TYR ILE VAL THR SEQRES 8 B 286 GLU TYR MET SER LYS GLY SER LEU LEU ASP PHE LEU LYS SEQRES 9 B 286 GLY GLU MET GLY LYS TYR LEU ARG LEU PRO GLN LEU VAL SEQRES 10 B 286 ASP MET ALA ALA GLN ILE ALA SER GLY MET ALA TYR VAL SEQRES 11 B 286 GLU ARG MET ASN TYR VAL HIS ARG ASP LEU ARG ALA ALA SEQRES 12 B 286 ASN ILE LEU VAL GLY GLU ASN LEU VAL CYS LYS VAL ALA SEQRES 13 B 286 ASP PHE GLY LEU ALA ARG LEU ILE GLU ASP ASN GLU TYR SEQRES 14 B 286 THR ALA ARG GLN GLY ALA LYS PHE PRO ILE LYS TRP THR SEQRES 15 B 286 ALA PRO GLU ALA ALA LEU TYR GLY ARG PHE THR ILE LYS SEQRES 16 B 286 SER ASP VAL TRP SER PHE GLY ILE LEU LEU THR GLU LEU SEQRES 17 B 286 THR THR LYS GLY ARG VAL PRO TYR PRO GLY MET VAL ASN SEQRES 18 B 286 ARG GLU VAL LEU ASP GLN VAL GLU ARG GLY TYR ARG MET SEQRES 19 B 286 PRO CYS PRO PRO GLU CYS PRO GLU SER LEU HIS ASP LEU SEQRES 20 B 286 MET CYS GLN CYS TRP ARG LYS ASP PRO GLU GLU ARG PRO SEQRES 21 B 286 THR PHE GLU TYR LEU GLN ALA PHE LEU GLU ASP TYR PHE SEQRES 22 B 286 THR SER THR GLU PRO GLN TYR GLN PRO GLY GLU ASN LEU HET NG7 A1534 43 HET MES A1535 12 HET GOL A1536 6 HET NG7 B1534 43 HET MES B1535 12 HETNAM NG7 3-{2-[(CYCLOPROPYLCARBONYL)AMINO][1,3]THIAZOLO[5,4- HETNAM 2 NG7 B]PYRIDIN-5-YL}-N-{4-[(4-ETHYLPIPERAZIN-1-YL)METHYL]- HETNAM 3 NG7 3-(TRIFLUOROMET HYL)PHENYL}BENZAMIDE HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM GOL GLYCEROL HETSYN NG7 HG-7-85-01 HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NG7 2(C31 H31 F3 N6 O2 S) FORMUL 4 MES 2(C6 H13 N O4 S) FORMUL 5 GOL C3 H8 O3 FORMUL 8 HOH *152(H2 O) HELIX 1 1 PRO A 263 GLU A 265 5 3 HELIX 2 2 SER A 303 LEU A 308 1 6 HELIX 3 3 LEU A 308 LYS A 316 1 9 HELIX 4 4 SER A 345 GLY A 352 1 8 HELIX 5 5 GLU A 353 LEU A 358 5 6 HELIX 6 6 ARG A 359 MET A 380 1 22 HELIX 7 7 ARG A 388 ALA A 390 5 3 HELIX 8 8 GLU A 396 LEU A 398 5 3 HELIX 9 9 ALA A 430 GLY A 437 1 8 HELIX 10 10 THR A 440 THR A 457 1 18 HELIX 11 11 VAL A 467 GLY A 478 1 12 HELIX 12 12 PRO A 488 TRP A 499 1 12 HELIX 13 13 THR A 508 ASP A 518 1 11 HELIX 14 14 ASP A 518 THR A 523 1 6 HELIX 15 15 PRO B 263 LEU B 267 5 5 HELIX 16 16 SER B 303 LEU B 317 1 15 HELIX 17 17 SER B 345 GLY B 352 1 8 HELIX 18 18 GLU B 353 LEU B 358 5 6 HELIX 19 19 ARG B 359 MET B 380 1 22 HELIX 20 20 ARG B 388 ALA B 390 5 3 HELIX 21 21 GLU B 396 LEU B 398 5 3 HELIX 22 22 ALA B 430 GLY B 437 1 8 HELIX 23 23 THR B 440 THR B 457 1 18 HELIX 24 24 VAL B 467 GLY B 478 1 12 HELIX 25 25 PRO B 488 TRP B 499 1 12 HELIX 26 26 THR B 508 ASP B 518 1 11 HELIX 27 27 ASP B 518 THR B 523 1 6 SHEET 1 AA 5 LEU A 267 GLN A 275 0 SHEET 2 AA 5 GLU A 280 TRP A 286 -1 O VAL A 281 N LEU A 273 SHEET 3 AA 5 THR A 290 LEU A 297 -1 O THR A 290 N TRP A 286 SHEET 4 AA 5 ILE A 334 GLU A 339 -1 O ILE A 334 N LEU A 297 SHEET 5 AA 5 LEU A 325 VAL A 329 -1 N TYR A 326 O VAL A 337 SHEET 1 AB 2 ILE A 392 VAL A 394 0 SHEET 2 AB 2 CYS A 400 VAL A 402 -1 O LYS A 401 N LEU A 393 SHEET 1 BA 5 ARG B 268 GLY B 276 0 SHEET 2 BA 5 GLY B 279 TRP B 286 -1 O GLY B 279 N GLY B 276 SHEET 3 BA 5 THR B 290 LEU B 297 -1 O THR B 290 N TRP B 286 SHEET 4 BA 5 ILE B 334 GLU B 339 -1 O ILE B 334 N LEU B 297 SHEET 5 BA 5 LEU B 325 VAL B 329 -1 N TYR B 326 O VAL B 337 SHEET 1 BB 2 ILE B 392 VAL B 394 0 SHEET 2 BB 2 CYS B 400 VAL B 402 -1 O LYS B 401 N LEU B 393 CISPEP 1 GLU A 332 PRO A 333 0 -4.65 CISPEP 2 GLU B 332 PRO B 333 0 -4.92 SITE 1 AC1 23 LEU A 273 ALA A 293 LYS A 295 VAL A 313 SITE 2 AC1 23 MET A 314 LEU A 317 LEU A 322 THR A 338 SITE 3 AC1 23 GLU A 339 TYR A 340 MET A 341 SER A 342 SITE 4 AC1 23 LYS A 343 GLY A 344 VAL A 383 HIS A 384 SITE 5 AC1 23 ARG A 385 LEU A 393 VAL A 402 ALA A 403 SITE 6 AC1 23 ASP A 404 MES A1535 HOH A2004 SITE 1 AC2 5 MET A 380 ASN A 381 TYR A 382 VAL A 383 SITE 2 AC2 5 NG7 A1534 SITE 1 AC3 8 LYS A 427 VAL A 461 TYR A 463 PRO A 464 SITE 2 AC3 8 GLY A 465 GLU B 517 ASP B 518 THR B 521 SITE 1 AC4 23 LEU B 273 ALA B 293 LYS B 295 GLU B 310 SITE 2 AC4 23 VAL B 313 MET B 314 LEU B 317 LEU B 322 SITE 3 AC4 23 THR B 338 GLU B 339 TYR B 340 MET B 341 SITE 4 AC4 23 SER B 342 GLY B 344 VAL B 383 HIS B 384 SITE 5 AC4 23 ARG B 385 LEU B 393 VAL B 402 ALA B 403 SITE 6 AC4 23 ASP B 404 PHE B 405 MES B1535 SITE 1 AC5 5 MET B 380 ASN B 381 TYR B 382 VAL B 383 SITE 2 AC5 5 NG7 B1534 CRYST1 40.738 61.393 71.814 79.57 89.10 90.14 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024547 0.000060 -0.000403 0.00000 SCALE2 0.000000 0.016289 -0.002999 0.00000 SCALE3 0.000000 0.000000 0.014161 0.00000