HEADER TRANSCRIPTION 21-FEB-12 4AJY TITLE VON HIPPEL-LINDAU PROTEIN-ELONGINB-ELONGINC COMPLEX, BOUND TO HIF1- TITLE 2 ALPHA PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: ELONGIN 18 KDA SUBUNIT, ELONGIN-B, ELOB, RNA POLYMERASE II COMPND 5 TRANSCRIPTION FACTOR SIII SUBUNIT B, SIII P18; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1; COMPND 9 CHAIN: C; COMPND 10 FRAGMENT: 17-112; COMPND 11 SYNONYM: ELONGIN 15 KDA SUBUNIT, ELONGIN-C, ELOC, RNA POLYMERASE II COMPND 12 TRANSCRIPTION FACTOR SIII SUBUNIT C, SIII P15; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: EXTRA MET AT N-TERMINUS DUE TO CLONING; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1-ALPHA; COMPND 17 CHAIN: H; COMPND 18 FRAGMENT: RESIDUES 559-577; COMPND 19 SYNONYM: HIF-1-ALPHA, HIF1-ALPHA, ARNT-INTERACTING PROTEIN, BASIC- COMPND 20 HELIX-LOOP-HELIX-PAS PROTEIN MOP1, CLASS E BASIC HELIX-LOOP-HELIX COMPND 21 PROTEIN 78, BHLHE78, MEMBER OF PAS PROTEIN 1, PAS DOMAIN-CONTAINING COMPND 22 PROTEIN 8; COMPND 23 ENGINEERED: YES; COMPND 24 MUTATION: YES; COMPND 25 MOL_ID: 4; COMPND 26 MOLECULE: VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR; COMPND 27 CHAIN: V; COMPND 28 FRAGMENT: RESIDUES 54-213; COMPND 29 SYNONYM: PROTEIN G7, PVHL, PVHL54-213; COMPND 30 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PCDF_DUET; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PCDF_DUET; SOURCE 19 MOL_ID: 3; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 22 ORGANISM_COMMON: HUMAN SOURCE 19; SOURCE 23 ORGANISM_TAXID: 9606; SOURCE 24 MOL_ID: 4; SOURCE 25 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 26 ORGANISM_COMMON: HUMAN; SOURCE 27 ORGANISM_TAXID: 9606; SOURCE 28 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 29 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 30 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 31 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 32 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS E3 UBIQUITIN LIGASE, TRANSCRIPTION FACTOR, HYPOXIC SIGNALING, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR I.VAN MOLLE,A.THOMANN,D.L.BUCKLEY,E.C.SO,S.LANG,C.M.CREWS,A.CIULLI REVDAT 2 20-DEC-23 4AJY 1 REMARK LINK REVDAT 1 14-NOV-12 4AJY 0 JRNL AUTH I.VAN MOLLE,A.THOMANN,D.L.BUCKLEY,E.C.SO,S.LANG,C.M.CREWS, JRNL AUTH 2 A.CIULLI JRNL TITL DISSECTING FRAGMENT-BASED LEAD DISCOVERY AT THE VON JRNL TITL 2 HIPPEL-LINDAU PROTEIN:HYPOXIA INDUCIBLE FACTOR 1ALPHA JRNL TITL 3 PROTEIN-PROTEIN INTERFACE. JRNL REF CHEM.BIOL. V. 19 1300 2012 JRNL REFN ISSN 1074-5521 JRNL PMID 23102223 JRNL DOI 10.1016/J.CHEMBIOL.2012.08.015 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 43989 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2316 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.73 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2803 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.3340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2800 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 242 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.104 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.108 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.097 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2884 ; 0.022 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3924 ; 2.178 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 355 ; 6.301 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;36.635 ;23.465 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 473 ;13.952 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;21.341 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 450 ; 0.168 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2184 ; 0.014 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT. U REMARK 3 VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4AJY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1290051389. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98011 REMARK 200 MONOCHROMATOR : CHANNEL CUT CRYOGENICALLY COOLED REMARK 200 MONOCHROMATOR CRYSTAL REMARK 200 OPTICS : KIRKPATRICK-BAEZ PAIR OF BI REMARK 200 -MORPH MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46307 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.090 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1LM8 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M K PHOSPHATE PH 6.6 0.2 M REMARK 280 (NH4)2SO4 20% PEG MME 5000 5 MM DTT REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 122.01900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.61600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.61600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 183.02850 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.61600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.61600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 61.00950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.61600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.61600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 183.02850 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.61600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.61600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 61.00950 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 122.01900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, H, V REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN B 106 REMARK 465 ASP B 107 REMARK 465 SER B 108 REMARK 465 GLY B 109 REMARK 465 SER B 110 REMARK 465 SER B 111 REMARK 465 ALA B 112 REMARK 465 ASN B 113 REMARK 465 GLU B 114 REMARK 465 GLN B 115 REMARK 465 ALA B 116 REMARK 465 VAL B 117 REMARK 465 GLN B 118 REMARK 465 MET C 16 REMARK 465 GLY C 50 REMARK 465 GLN C 51 REMARK 465 PHE C 52 REMARK 465 ALA C 53 REMARK 465 GLU C 54 REMARK 465 ASN C 55 REMARK 465 GLU C 56 REMARK 465 THR C 57 REMARK 465 ASP H 559 REMARK 465 ARG H 575 REMARK 465 SER H 576 REMARK 465 PHE H 577 REMARK 465 GLY V 51 REMARK 465 SER V 52 REMARK 465 HIS V 53 REMARK 465 MET V 54 REMARK 465 GLU V 55 REMARK 465 ALA V 56 REMARK 465 GLY V 57 REMARK 465 ARG V 58 REMARK 465 PRO V 59 REMARK 465 HIS V 208 REMARK 465 GLN V 209 REMARK 465 ARG V 210 REMARK 465 MET V 211 REMARK 465 GLY V 212 REMARK 465 ASP V 213 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 80 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 82 CG OD1 OD2 REMARK 470 ASP B 83 CG OD1 OD2 REMARK 470 ARG C 63 CG CD NE CZ NH1 NH2 REMARK 470 GLU H 560 CG CD OE1 OE2 REMARK 470 ARG V 69 CG CD NE CZ NH1 NH2 REMARK 470 GLN V 73 CG CD OE1 NE2 REMARK 470 GLU V 94 CG CD OE1 OE2 REMARK 470 VAL V 142 CG1 CG2 REMARK 470 ASP V 143 CG OD1 OD2 REMARK 470 GLN V 145 CG CD OE1 NE2 REMARK 470 ILE V 147 CG1 CG2 CD1 REMARK 470 LYS V 171 CG CD CE NZ REMARK 470 ARG V 182 CG CD NE CZ NH1 NH2 REMARK 470 GLU V 199 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 102 CD GLU C 102 OE1 0.073 REMARK 500 ALA H 563 C HYP H 564 N 0.170 REMARK 500 HIS V 115 CG HIS V 115 CD2 0.066 REMARK 500 TRP V 117 CE2 TRP V 117 CD2 0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 29 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 PRO C 49 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 ARG V 113 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG V 120 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG V 120 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG V 205 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS B 10 -120.36 56.08 REMARK 500 ASP B 47 -122.01 53.79 REMARK 500 ALA B 71 66.39 -151.54 REMARK 500 ASP B 83 12.42 -151.46 REMARK 500 ARG V 69 17.76 55.18 REMARK 500 ARG V 79 46.56 -99.86 REMARK 500 SER V 111 -157.48 -123.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH V2010 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH V2079 DISTANCE = 6.93 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL V 1208 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1D7G RELATED DB: PDB REMARK 900 A MODEL FOR THE COMPLEX BETWEEN THE HYPOXIA-INDUCIBLE FACTOR-1 (HIF- REMARK 900 1) AND ITS CONSENSUS DEOXYRIBONUCLEIC ACID SEQUENCE REMARK 900 RELATED ID: 1H2K RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH HIF-1 ALPHA FRAGMENT REMARK 900 PEPTIDE REMARK 900 RELATED ID: 1H2L RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH HIF-1 ALPHA FRAGMENT REMARK 900 PEPTIDE REMARK 900 RELATED ID: 1H2M RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH HIF-1 ALPHA FRAGMENT REMARK 900 PEPTIDE REMARK 900 RELATED ID: 1L3E RELATED DB: PDB REMARK 900 NMR STRUCTURES OF THE HIF-1ALPHA CTAD/P300 CH1 COMPLEX REMARK 900 RELATED ID: 1L8C RELATED DB: PDB REMARK 900 STRUCTURAL BASIS FOR HIF-1ALPHA/CBP RECOGNITION IN THECELLULAR REMARK 900 HYPOXIC RESPONSE REMARK 900 RELATED ID: 1LM8 RELATED DB: PDB REMARK 900 STRUCTURE OF A HIF-1A-PVHL-ELONGINB-ELONGINC COMPLEX REMARK 900 RELATED ID: 1LQB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A HYDROXYLATED HIF-1 ALPHA PEPTIDEBOUND TO THE REMARK 900 PVHL/ELONGIN-C/ELONGIN-B COMPLEX REMARK 900 RELATED ID: 1VCB RELATED DB: PDB REMARK 900 THE VHL-ELONGINC-ELONGINB STRUCTURE REMARK 900 RELATED ID: 2C9W RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SOCS-2 IN COMPLEX WITH ELONGIN- B AND ELONGIN- REMARK 900 C AT 1.9A RESOLUTION REMARK 900 RELATED ID: 2IZV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SOCS-4 IN COMPLEX WITH ELONGIN- B AND ELONGIN- REMARK 900 C AT 2.55A RESOLUTION REMARK 900 RELATED ID: 2XAI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANKYRIN REPEAT AND SOCS BOX- CONTAINING REMARK 900 PROTEIN 9 (ASB9) IN COMPLEX WITH ELONGINB AND ELONGINC REMARK 900 RELATED ID: 3ZRC RELATED DB: PDB REMARK 900 PVHL54-213-ELOB-ELOC COMPLEX (4R)-4-HYDROXY-1-[(3- METHYLISOXAZOL-5- REMARK 900 YL)ACETYL]-N-[4-(1,3-OXAZOL-5-YL )BENZYL]-L-PROLINAMIDE BOUND REMARK 900 RELATED ID: 3ZRF RELATED DB: PDB REMARK 900 PVHL54-213-ELOB-ELOC COMPLEX_APO REMARK 900 RELATED ID: 3ZTC RELATED DB: PDB REMARK 900 PVHL54-213-ELOB-ELOC COMPLEX _ (2S,4R)-N-((1,1'- BIPHENYL)-4- REMARK 900 YLMETHYL)-4-HYDROXY-1-(2-(3-METHYLISOXAZOL -5-YL)ACETYL)PYRROLIDINE- REMARK 900 2-CARBOXAMIDE REMARK 900 RELATED ID: 3ZTD RELATED DB: PDB REMARK 900 PVHL54-213-ELOB-ELOC COMPLEX _ METHYL 4-(((2S,4R)- 4-HYDROXY-1-(2- REMARK 900 (3-METHYLISOXAZOL-5-YL)ACETYL) PYRROLIDINE-2-CARBOXAMIDO)METHYL) REMARK 900 BENZOATE REMARK 900 RELATED ID: 3ZUN RELATED DB: PDB REMARK 900 PVHL54-213-ELOB-ELOC COMPLEX_(2S,4R)-4-HYDROXY-1-( 2-(3- REMARK 900 METHYLISOXAZOL-5-YL)ACETYL)-N-(4-NITROBENZYL) PYRROLIDINE-2- REMARK 900 CARBOXAMIDE BOUND DBREF 4AJY B 1 118 UNP Q15370 ELOB_HUMAN 1 118 DBREF 4AJY C 17 112 UNP Q15369 ELOC_HUMAN 1 96 DBREF 4AJY H 559 577 UNP Q16665 HIF1A_HUMAN 559 577 DBREF 4AJY V 54 213 UNP P40337 VHL_HUMAN 214 373 SEQADV 4AJY MET C 16 UNP Q15369 EXPRESSION TAG SEQADV 4AJY ASP H 559 UNP Q16665 LEU 559 ENGINEERED MUTATION SEQADV 4AJY ALA H 561 UNP Q16665 MET 561 ENGINEERED MUTATION SEQADV 4AJY GLY V 51 UNP P40337 EXPRESSION TAG SEQADV 4AJY SER V 52 UNP P40337 EXPRESSION TAG SEQADV 4AJY HIS V 53 UNP P40337 EXPRESSION TAG SEQRES 1 B 118 MET ASP VAL PHE LEU MET ILE ARG ARG HIS LYS THR THR SEQRES 2 B 118 ILE PHE THR ASP ALA LYS GLU SER SER THR VAL PHE GLU SEQRES 3 B 118 LEU LYS ARG ILE VAL GLU GLY ILE LEU LYS ARG PRO PRO SEQRES 4 B 118 ASP GLU GLN ARG LEU TYR LYS ASP ASP GLN LEU LEU ASP SEQRES 5 B 118 ASP GLY LYS THR LEU GLY GLU CYS GLY PHE THR SER GLN SEQRES 6 B 118 THR ALA ARG PRO GLN ALA PRO ALA THR VAL GLY LEU ALA SEQRES 7 B 118 PHE ARG ALA ASP ASP THR PHE GLU ALA LEU CYS ILE GLU SEQRES 8 B 118 PRO PHE SER SER PRO PRO GLU LEU PRO ASP VAL MET LYS SEQRES 9 B 118 PRO GLN ASP SER GLY SER SER ALA ASN GLU GLN ALA VAL SEQRES 10 B 118 GLN SEQRES 1 C 97 MET MET TYR VAL LYS LEU ILE SER SER ASP GLY HIS GLU SEQRES 2 C 97 PHE ILE VAL LYS ARG GLU HIS ALA LEU THR SER GLY THR SEQRES 3 C 97 ILE LYS ALA MET LEU SER GLY PRO GLY GLN PHE ALA GLU SEQRES 4 C 97 ASN GLU THR ASN GLU VAL ASN PHE ARG GLU ILE PRO SER SEQRES 5 C 97 HIS VAL LEU SER LYS VAL CYS MET TYR PHE THR TYR LYS SEQRES 6 C 97 VAL ARG TYR THR ASN SER SER THR GLU ILE PRO GLU PHE SEQRES 7 C 97 PRO ILE ALA PRO GLU ILE ALA LEU GLU LEU LEU MET ALA SEQRES 8 C 97 ALA ASN PHE LEU ASP CYS SEQRES 1 H 19 ASP GLU ALA LEU ALA HYP TYR ILE PRO MET ASP ASP ASP SEQRES 2 H 19 PHE GLN LEU ARG SER PHE SEQRES 1 V 163 GLY SER HIS MET GLU ALA GLY ARG PRO ARG PRO VAL LEU SEQRES 2 V 163 ARG SER VAL ASN SER ARG GLU PRO SER GLN VAL ILE PHE SEQRES 3 V 163 CYS ASN ARG SER PRO ARG VAL VAL LEU PRO VAL TRP LEU SEQRES 4 V 163 ASN PHE ASP GLY GLU PRO GLN PRO TYR PRO THR LEU PRO SEQRES 5 V 163 PRO GLY THR GLY ARG ARG ILE HIS SER TYR ARG GLY HIS SEQRES 6 V 163 LEU TRP LEU PHE ARG ASP ALA GLY THR HIS ASP GLY LEU SEQRES 7 V 163 LEU VAL ASN GLN THR GLU LEU PHE VAL PRO SER LEU ASN SEQRES 8 V 163 VAL ASP GLY GLN PRO ILE PHE ALA ASN ILE THR LEU PRO SEQRES 9 V 163 VAL TYR THR LEU LYS GLU ARG CYS LEU GLN VAL VAL ARG SEQRES 10 V 163 SER LEU VAL LYS PRO GLU ASN TYR ARG ARG LEU ASP ILE SEQRES 11 V 163 VAL ARG SER LEU TYR GLU ASP LEU GLU ASP HIS PRO ASN SEQRES 12 V 163 VAL GLN LYS ASP LEU GLU ARG LEU THR GLN GLU ARG ILE SEQRES 13 V 163 ALA HIS GLN ARG MET GLY ASP MODRES 4AJY HYP H 564 PRO 4-HYDROXYPROLINE HET HYP H 564 8 HET GOL V1208 6 HETNAM HYP 4-HYDROXYPROLINE HETNAM GOL GLYCEROL HETSYN HYP HYDROXYPROLINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 HYP C5 H9 N O3 FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *242(H2 O) HELIX 1 1 THR B 23 LYS B 36 1 14 HELIX 2 2 PRO B 38 ASP B 40 5 3 HELIX 3 3 THR B 63 ALA B 67 5 5 HELIX 4 4 PRO B 100 LYS B 104 5 5 HELIX 5 5 ARG C 33 LEU C 37 1 5 HELIX 6 6 SER C 39 SER C 47 1 9 HELIX 7 7 PRO C 66 THR C 84 1 19 HELIX 8 8 ALA C 96 GLU C 98 5 3 HELIX 9 9 ILE C 99 ASP C 111 1 13 HELIX 10 10 THR V 157 VAL V 170 1 14 HELIX 11 11 LYS V 171 LEU V 178 5 8 HELIX 12 12 ARG V 182 ASP V 190 1 9 HELIX 13 13 ASN V 193 ALA V 207 1 15 SHEET 1 BA 8 GLN B 49 LEU B 50 0 SHEET 2 BA 8 GLN B 42 LYS B 46 -1 O LYS B 46 N GLN B 49 SHEET 3 BA 8 ALA B 73 PHE B 79 -1 O GLY B 76 N TYR B 45 SHEET 4 BA 8 ASP B 2 ARG B 9 1 O PHE B 4 N ALA B 73 SHEET 5 BA 8 THR B 12 LYS B 19 -1 O THR B 12 N ARG B 9 SHEET 6 BA 8 GLU C 28 LYS C 32 1 O GLU C 28 N THR B 13 SHEET 7 BA 8 TYR C 18 ILE C 22 -1 O VAL C 19 N VAL C 31 SHEET 8 BA 8 GLU C 59 ASN C 61 1 O VAL C 60 N ILE C 22 SHEET 1 HA 5 PHE H 572 GLN H 573 0 SHEET 2 HA 5 THR V 105 TYR V 112 -1 O GLY V 106 N PHE H 572 SHEET 3 HA 5 PRO V 71 ASN V 78 -1 O SER V 72 N SER V 111 SHEET 4 HA 5 ILE V 147 THR V 152 1 O ILE V 147 N ILE V 75 SHEET 5 HA 5 LEU V 129 VAL V 130 -1 O LEU V 129 N THR V 152 SHEET 1 VA 3 PRO V 95 PRO V 97 0 SHEET 2 VA 3 VAL V 84 LEU V 89 -1 O TRP V 88 N GLN V 96 SHEET 3 VA 3 LEU V 116 ASP V 121 -1 O LEU V 116 N LEU V 89 LINK C ALA H 563 N HYP H 564 1555 1555 1.51 LINK C HYP H 564 N TYR H 565 1555 1555 1.45 SITE 1 AC1 5 GLU C 92 ARG V 82 ARG V 161 HOH V2027 SITE 2 AC1 5 HOH V2046 CRYST1 59.232 59.232 244.038 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016883 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016883 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004098 0.00000