HEADER HEPARIN-BINDING PROTEIN 21-FEB-12 4AK2 TITLE STRUCTURE OF BT4661, A SUSE-LIKE SURFACE LOCATED POLYSACCHARIDE TITLE 2 BINDING PROTEIN FROM THE BACTEROIDES THETAIOTAOMICRON HEPARIN TITLE 3 UTILISATION LOCUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BT_4661; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIGAND-BINDING DOMAIN, RESIDUES 448-726; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 STRAIN: VPI-5482; SOURCE 5 ATCC: 29148; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET28B KEYWDS HEPARIN-BINDING PROTEIN, HEPARAN SULPHATE EXPDTA X-RAY DIFFRACTION AUTHOR E.C.LOWE,A.BASLE,M.CZJZEK,S.THOMAS,H.MURRAY,S.J.FIRBANK,D.N.BOLAM REVDAT 4 08-MAY-24 4AK2 1 HETSYN REVDAT 3 29-JUL-20 4AK2 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 12-DEC-18 4AK2 1 JRNL REVDAT 1 06-MAR-13 4AK2 0 JRNL AUTH A.CARTMELL,E.C.LOWE,A.BASLE,S.J.FIRBANK,D.A.NDEH,H.MURRAY, JRNL AUTH 2 N.TERRAPON,V.LOMBARD,B.HENRISSAT,J.E.TURNBULL,M.CZJZEK, JRNL AUTH 3 H.J.GILBERT,D.N.BOLAM JRNL TITL HOW MEMBERS OF THE HUMAN GUT MICROBIOTA OVERCOME THE JRNL TITL 2 SULFATION PROBLEM POSED BY GLYCOSAMINOGLYCANS. JRNL REF PROC. NATL. ACAD. SCI. V. 114 7037 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28630303 JRNL DOI 10.1073/PNAS.1704367114 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 62965 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3363 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4321 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 221 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2204 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 107 REMARK 3 SOLVENT ATOMS : 376 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.79000 REMARK 3 B22 (A**2) : -0.27000 REMARK 3 B33 (A**2) : 2.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.058 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.055 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.036 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.946 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2406 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3301 ; 1.604 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 299 ; 7.029 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 110 ;36.876 ;24.455 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 334 ;10.906 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;22.347 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 374 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1834 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2406 ; 3.812 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 80 ;31.186 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2632 ;17.767 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. DISORDERED ATOMS WERE REMOVED. REMARK 4 REMARK 4 4AK2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-FEB-12. REMARK 100 THE DEPOSITION ID IS D_1290051379. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97930 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 66383 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 29.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 1500, 100 MM MMT PH 6-8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.30000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.57000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.07500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.57000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.30000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.07500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 421 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 455 CD CE NZ REMARK 470 LYS A 469 CE NZ REMARK 470 LYS A 476 CD CE NZ REMARK 470 LYS A 489 CD CE NZ REMARK 470 GLU A 520 CG CD OE1 OE2 REMARK 470 LYS A 522 CG CD CE NZ REMARK 470 LYS A 528 CE NZ REMARK 470 LYS A 603 CG CD CE NZ REMARK 470 LYS A 637 CG CD CE NZ REMARK 470 LYS A 659 CG CD CE NZ REMARK 470 LYS A 678 CE NZ REMARK 470 LYS A 699 CE NZ REMARK 470 HIS A 708 CA C O CB CG ND1 CD2 REMARK 470 HIS A 708 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 487 -9.00 -150.01 REMARK 500 ARG A 581 -51.97 -136.22 REMARK 500 ILE A 589 -65.50 -107.44 REMARK 500 ASN A 634 56.03 -151.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2187 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH A2228 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A2237 DISTANCE = 6.33 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 IDS B 6 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1715 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 583 O REMARK 620 2 SER A 690 OG 142.0 REMARK 620 3 HOH A2096 O 128.5 89.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1716 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 614 OG REMARK 620 2 LEU A 655 O 129.4 REMARK 620 3 HOH A2376 O 112.9 116.3 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4AK1 RELATED DB: PDB REMARK 900 STRUCTURE OF BT4661, A SUSE-LIKE SURFACE LOCATED POLYSACCHARIDE REMARK 900 BINDING PROTEIN FROM THE BACTEROIDES THETAIOTAOMICRON HEPARIN REMARK 900 UTILISATION LOCUS DBREF 4AK2 A 422 700 UNP Q89YS0 Q89YS0_BACTN 448 726 SEQADV 4AK2 MET A 421 UNP Q89YS0 EXPRESSION TAG SEQADV 4AK2 LEU A 701 UNP Q89YS0 EXPRESSION TAG SEQADV 4AK2 GLU A 702 UNP Q89YS0 EXPRESSION TAG SEQADV 4AK2 HIS A 703 UNP Q89YS0 EXPRESSION TAG SEQADV 4AK2 HIS A 704 UNP Q89YS0 EXPRESSION TAG SEQADV 4AK2 HIS A 705 UNP Q89YS0 EXPRESSION TAG SEQADV 4AK2 HIS A 706 UNP Q89YS0 EXPRESSION TAG SEQADV 4AK2 HIS A 707 UNP Q89YS0 EXPRESSION TAG SEQADV 4AK2 HIS A 708 UNP Q89YS0 EXPRESSION TAG SEQRES 1 A 288 MET ALA ASN PRO ASN TYR PHE THR TYR PHE ARG TYR GLY SEQRES 2 A 288 ASN ASN LEU GLY LEU THR PRO ILE GLU ASN TYR ALA ASP SEQRES 3 A 288 GLN PHE ARG ILE GLU ALA GLY GLY LYS LEU ASN SER VAL SEQRES 4 A 288 LYS PRO VAL PRO THR ALA THR ASP ALA LYS ASP GLY LEU SEQRES 5 A 288 SER SER LEU LYS TRP GLU VAL GLU LEU LYS HIS ASN PRO SEQRES 6 A 288 ASN ASN THR LYS ALA THR ILE ASN GLU SER THR GLY GLN SEQRES 7 A 288 ILE THR ILE THR GLY LEU LYS GLN GLY GLN CYS GLY MET SEQRES 8 A 288 VAL MET VAL THR ALA THR ALA GLY GLU GLY LYS THR ALA SEQRES 9 A 288 VAL SER VAL LYS GLN PRO VAL PHE PHE HIS PHE SER MET SEQRES 10 A 288 ILE SER ASP SER ASN VAL GLN LEU GLU TYR THR PRO PHE SEQRES 11 A 288 VAL PHE GLN VAL ASN PRO ALA ARG GLY GLY GLU SER ILE SEQRES 12 A 288 ALA PRO SER LEU GLY ALA GLY ILE ASP LYS SER THR PHE SEQRES 13 A 288 ARG LEU ASP TYR ARG ARG ASP PHE PHE TYR TYR ASN ILE SEQRES 14 A 288 ALA GLY PRO ASP SER HIS ILE SER GLY ALA LEU ALA GLN SEQRES 15 A 288 LYS VAL ASP ASN PHE LEU SER GLU MET TRP ASN SER TYR SEQRES 16 A 288 ASP ALA THR ALA GLY THR SER ARG LYS PRO MET SER TYR SEQRES 17 A 288 PHE GLU ASN THR THR ASN LEU SER LYS ALA LEU GLY TYR SEQRES 18 A 288 ILE ASP GLN THR ASP PHE LYS VAL HIS ILE ASN PRO ASN SEQRES 19 A 288 LEU TRP ARG ASN LYS ASP GLY TYR ALA ASN GLY ALA MET SEQRES 20 A 288 ILE GLY GLN ILE THR TYR ASP VAL THR GLY LYS ASP PRO SEQRES 21 A 288 GLN ALA ALA THR SER GLY ALA ARG VAL SER PRO ILE PHE SEQRES 22 A 288 ILE TRP PHE ASP THR LYS PHE LEU GLU HIS HIS HIS HIS SEQRES 23 A 288 HIS HIS HET SGN B 1 20 HET IDS B 2 16 HET SGN B 3 19 HET IDS B 4 16 HET SGN B 5 19 HET IDS B 6 15 HET NA A1715 1 HET NA A1716 1 HETNAM SGN 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D-GLUCOPYRANOSE HETNAM IDS 2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID HETNAM NA SODIUM ION HETSYN SGN N,O6-DISULFO-GLUCOSAMINE; 6-O-SULFO-N-SULFO-ALPHA-D- HETSYN 2 SGN GLUCOSAMINE; 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D- HETSYN 3 SGN GLUCOSE; 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-D-GLUCOSE; HETSYN 4 SGN 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-GLUCOSE HETSYN IDS O2-SULFO-GLUCURONIC ACID; 2-O-SULFO-ALPHA-L-IDURONIC HETSYN 2 IDS ACID; 2-O-SULFO-L-IDURONIC ACID; 2-O-SULFO-IDURONIC HETSYN 3 IDS ACID FORMUL 2 SGN 3(C6 H13 N O11 S2) FORMUL 2 IDS 3(C6 H10 O10 S) FORMUL 3 NA 2(NA 1+) FORMUL 5 HOH *376(H2 O) HELIX 1 1 PRO A 440 TYR A 444 5 5 HELIX 2 2 LYS A 455 VAL A 459 5 5 HELIX 3 3 GLY A 471 LEU A 475 5 5 HELIX 4 4 GLU A 520 ALA A 524 5 5 HELIX 5 5 SER A 539 VAL A 543 5 5 HELIX 6 6 ASP A 572 PHE A 576 5 5 HELIX 7 7 ASN A 606 ASP A 616 1 11 HELIX 8 8 ARG A 623 SER A 627 5 5 HELIX 9 9 ASN A 634 ALA A 638 5 5 HELIX 10 10 THR A 684 GLY A 686 5 3 SHEET 1 AA 2 PHE A 430 ARG A 431 0 SHEET 2 AA 2 ALA A 465 THR A 466 -1 O ALA A 465 N ARG A 431 SHEET 1 AB 4 GLN A 447 ILE A 450 0 SHEET 2 AB 4 VAL A 525 PHE A 535 1 O PHE A 532 N PHE A 448 SHEET 3 AB 4 CYS A 509 ALA A 518 -1 O GLY A 510 N PHE A 533 SHEET 4 AB 4 LYS A 476 HIS A 483 -1 O LYS A 476 N THR A 517 SHEET 1 AC 2 LYS A 489 ILE A 492 0 SHEET 2 AC 2 ILE A 499 THR A 502 -1 O THR A 500 N THR A 491 SHEET 1 AD 4 VAL A 551 VAL A 554 0 SHEET 2 AD 4 PHE A 693 PHE A 696 1 O PHE A 693 N PHE A 552 SHEET 3 AD 4 GLY A 665 ASP A 674 -1 O GLY A 665 N PHE A 696 SHEET 4 AD 4 ARG A 688 VAL A 689 1 O VAL A 689 N ILE A 671 SHEET 1 AE 5 VAL A 551 VAL A 554 0 SHEET 2 AE 5 PHE A 693 PHE A 696 1 O PHE A 693 N PHE A 552 SHEET 3 AE 5 GLY A 665 ASP A 674 -1 O GLY A 665 N PHE A 696 SHEET 4 AE 5 ARG A 577 ASN A 588 -1 O ARG A 577 N ASP A 674 SHEET 5 AE 5 GLY A 598 ALA A 599 -1 O GLY A 598 N TYR A 586 SHEET 1 AF 2 ARG A 688 VAL A 689 0 SHEET 2 AF 2 GLY A 665 ASP A 674 1 O ILE A 671 N VAL A 689 SHEET 1 AG 3 GLY A 560 GLU A 561 0 SHEET 2 AG 3 VAL A 649 ILE A 651 -1 O ILE A 651 N GLY A 560 SHEET 3 AG 3 GLY A 640 ILE A 642 -1 O TYR A 641 N HIS A 650 SHEET 1 AH 2 ARG A 657 ASN A 658 0 SHEET 2 AH 2 GLY A 661 TYR A 662 -1 O GLY A 661 N ASN A 658 LINK O4 SGN B 1 C1 IDS B 2 1555 1555 1.44 LINK O4 IDS B 2 C1 SGN B 3 1555 1555 1.43 LINK O4 SGN B 3 C1 IDS B 4 1555 1555 1.43 LINK O4 IDS B 4 C1 SGN B 5 1555 1555 1.44 LINK O4 SGN B 5 C1 IDS B 6 1555 1555 1.44 LINK O ASP A 583 NA NA A1715 1555 1555 2.86 LINK OG SER A 614 NA NA A1716 1555 1555 2.64 LINK O LEU A 655 NA NA A1716 1555 1555 2.72 LINK OG ASER A 690 NA NA A1715 1555 1555 2.88 LINK NA NA A1715 O HOH A2096 1555 1555 2.57 LINK NA NA A1716 O HOH A2376 1555 1555 2.34 CISPEP 1 THR A 439 PRO A 440 0 -10.02 CISPEP 2 HIS A 483 ASN A 484 0 4.53 CISPEP 3 THR A 548 PRO A 549 0 2.85 CRYST1 52.600 68.150 85.140 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019011 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014674 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011745 0.00000