HEADER CHAPERONE 08-MAR-12 4AM9 TITLE CRYSTAL STRUCTURE OF THE YERSINIA ENTEROCOLITICA TYPE III SECRETION TITLE 2 CHAPERONE SYCD IN COMPLEX WITH A PEPTIDE OF THE TRANSLOCATOR YOPD COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAPERONE SYCD; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 21-163; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: YOP EFFECTOR YOPD; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: RESIDUES 56-65; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA ENTEROCOLITICA; SOURCE 3 ORGANISM_TAXID: 630; SOURCE 4 STRAIN: W22703; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: CODONPLUS RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1; SOURCE 11 OTHER_DETAILS: YERSINIA ENTEROCOLITICA VIRULENCE PLASMID PYVE227 SOURCE 12 FROM STRAIN W22703; SOURCE 13 MOL_ID: 2; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: YERSINIA ENTEROCOLITICA; SOURCE 16 ORGANISM_TAXID: 630 KEYWDS CHAPERONE, CHAPERONE BINDING DOMAIN, CHAPERONE PEPTIDE COMPLEX, KEYWDS 2 PATHOGENICTIY FACTOR, TRANSLOCATOR, TETRATRICOPEPTIDE REPEAT, TPR, KEYWDS 3 T3SS, VIRULENCE FACTOR EXPDTA X-RAY DIFFRACTION AUTHOR M.SCHREINER,H.H.NIEMANN REVDAT 5 20-DEC-23 4AM9 1 REMARK REVDAT 4 25-SEP-19 4AM9 1 REMARK REVDAT 3 06-MAR-19 4AM9 1 REMARK LINK REVDAT 2 27-JUN-12 4AM9 1 JRNL REVDAT 1 30-MAY-12 4AM9 0 JRNL AUTH M.SCHREINER,H.H.NIEMANN JRNL TITL CRYSTAL STRUCTURE OF THE YERSINIA ENTEROCOLITICA TYPE III JRNL TITL 2 SECRETION CHAPERONE SYCD IN COMPLEX WITH A PEPTIDE OF THE JRNL TITL 3 MINOR TRANSLOCATOR YOPD JRNL REF BMC STRUCT.BIOL. V. 12 12 2012 JRNL REFN ESSN 1472-6807 JRNL PMID 22708907 JRNL DOI 10.1186/1472-6807-12-13 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 11901 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 588 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.6769 - 3.9642 0.99 2912 146 0.1797 0.2344 REMARK 3 2 3.9642 - 3.1489 1.00 2845 145 0.1721 0.2034 REMARK 3 3 3.1489 - 2.7515 1.00 2805 133 0.2176 0.2732 REMARK 3 4 2.7515 - 2.5002 0.98 2751 164 0.3134 0.3482 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 64.50 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.850 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.27380 REMARK 3 B22 (A**2) : 5.27380 REMARK 3 B33 (A**2) : -10.54770 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1180 REMARK 3 ANGLE : 1.061 1585 REMARK 3 CHIRALITY : 0.069 176 REMARK 3 PLANARITY : 0.006 201 REMARK 3 DIHEDRAL : 16.576 441 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 29:56) REMARK 3 ORIGIN FOR THE GROUP (A): -37.5842 6.5256 13.9266 REMARK 3 T TENSOR REMARK 3 T11: 0.4624 T22: 0.5539 REMARK 3 T33: 0.8502 T12: -0.1076 REMARK 3 T13: 0.1249 T23: 0.1867 REMARK 3 L TENSOR REMARK 3 L11: 1.2046 L22: 2.7405 REMARK 3 L33: 0.9526 L12: -1.5407 REMARK 3 L13: -0.4412 L23: 1.3438 REMARK 3 S TENSOR REMARK 3 S11: 0.5375 S12: 0.0997 S13: -0.5530 REMARK 3 S21: -0.5779 S22: -0.3269 S23: -0.5950 REMARK 3 S31: -0.3099 S32: 0.2135 S33: -0.0929 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 57:86) REMARK 3 ORIGIN FOR THE GROUP (A): -44.6207 9.1016 19.3299 REMARK 3 T TENSOR REMARK 3 T11: 0.6000 T22: 0.4523 REMARK 3 T33: 0.6452 T12: -0.0330 REMARK 3 T13: -0.0939 T23: 0.1098 REMARK 3 L TENSOR REMARK 3 L11: 0.4564 L22: 2.1747 REMARK 3 L33: 0.3516 L12: 0.0090 REMARK 3 L13: -0.3840 L23: -0.3361 REMARK 3 S TENSOR REMARK 3 S11: 0.3206 S12: -0.4733 S13: -0.0915 REMARK 3 S21: 0.5288 S22: -0.3763 S23: -0.2229 REMARK 3 S31: 0.0043 S32: -0.0865 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 87:133) REMARK 3 ORIGIN FOR THE GROUP (A): -51.9521 21.0169 23.2856 REMARK 3 T TENSOR REMARK 3 T11: 0.6152 T22: 0.5231 REMARK 3 T33: 0.4375 T12: -0.1332 REMARK 3 T13: -0.0001 T23: 0.0154 REMARK 3 L TENSOR REMARK 3 L11: 0.5936 L22: 2.2745 REMARK 3 L33: 1.5960 L12: 0.1137 REMARK 3 L13: -0.7129 L23: 1.1947 REMARK 3 S TENSOR REMARK 3 S11: 0.2166 S12: -0.7345 S13: -0.1423 REMARK 3 S21: 0.3567 S22: -0.3481 S23: 0.4026 REMARK 3 S31: -0.2058 S32: -0.4551 S33: 0.0004 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 134:159) REMARK 3 ORIGIN FOR THE GROUP (A): -52.1704 32.9422 17.8576 REMARK 3 T TENSOR REMARK 3 T11: 1.0553 T22: 0.8329 REMARK 3 T33: 0.5453 T12: 0.0230 REMARK 3 T13: 0.0969 T23: -0.1076 REMARK 3 L TENSOR REMARK 3 L11: 0.7776 L22: 0.8949 REMARK 3 L33: 0.6202 L12: 0.0562 REMARK 3 L13: 0.5202 L23: 0.5699 REMARK 3 S TENSOR REMARK 3 S11: -0.2382 S12: 0.8343 S13: 0.5467 REMARK 3 S21: -0.8087 S22: -0.0595 S23: -0.1046 REMARK 3 S31: -1.4513 S32: -0.1270 S33: -0.1002 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -41.0187 18.5051 11.7015 REMARK 3 T TENSOR REMARK 3 T11: 0.7198 T22: 0.5053 REMARK 3 T33: 0.8931 T12: -0.0197 REMARK 3 T13: -0.0944 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 1.7825 L22: 0.6040 REMARK 3 L33: 1.3102 L12: -0.0600 REMARK 3 L13: 0.1070 L23: 0.8952 REMARK 3 S TENSOR REMARK 3 S11: 0.2165 S12: 0.3571 S13: 2.3842 REMARK 3 S21: -1.1572 S22: -0.6712 S23: -0.7293 REMARK 3 S31: -1.1272 S32: 0.0846 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES 21-28 AND 160-163 FROM CHAIN A REMARK 3 ARE DISORDERED, RESIDUES 65 FROM CHAIN B IS DISORDERED REMARK 4 REMARK 4 4AM9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1290051529. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11931 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 14.00 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2VGY REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RESERVOIR SOLUTION: 50 MM MES PH 6, 50 REMARK 280 MM CITRATE PH 5, 1.1-1.4 M (NH4)2SO4. VAPOR DIFFUSION AT 293 K REMARK 280 WITH DROP RATIO OF 1 TO 0.5 PROTEIN TO RESERVOIR. PROTEIN REMARK 280 CONCENTRATION 8 MG/ML. 1.3 FOLD MOLAR EXCESS OF PEPTIDE OVER REMARK 280 PROTEIN. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 17.33267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.66533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 34.66533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 17.33267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 16 REMARK 465 PRO A 17 REMARK 465 LEU A 18 REMARK 465 GLY A 19 REMARK 465 SER A 20 REMARK 465 GLY A 21 REMARK 465 GLY A 22 REMARK 465 GLY A 23 REMARK 465 THR A 24 REMARK 465 ILE A 25 REMARK 465 ALA A 26 REMARK 465 MET A 27 REMARK 465 LEU A 28 REMARK 465 MET A 160 REMARK 465 LYS A 161 REMARK 465 HIS A 162 REMARK 465 GLU A 163 REMARK 465 GLN B 65 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN B 56 O - C - N ANGL. DEV. = -17.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 33 -159.48 -76.72 REMARK 500 ASP A 34 47.00 -94.12 REMARK 500 GLU A 119 78.91 -112.31 REMARK 500 ALA A 135 -125.53 51.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLN B 56 27.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1160 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU3 A 1161 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU3 A 1162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU3 A 1163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU3 A 1164 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU3 B 1065 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VGX RELATED DB: PDB REMARK 900 STRUCTURE OF THE YERSINIA ENTEROCOLITICA TYPE III SECRETION REMARK 900 TRANSLOCATOR CHAPERONE SYCD REMARK 900 RELATED ID: 2VGY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE YERSINIA ENTEROCOLITICA TYPE III SECRETION REMARK 900 TRANSLOCATOR CHAPERONE SYCD (ALTERNATIVE DIMER) REMARK 999 REMARK 999 SEQUENCE REMARK 999 FIVE ADDITIONAL N-TERMINAL RESIDUES DUE TO PRESCISSION REMARK 999 PROTEASE CLEAVAGE REMARK 999 SYNTHETIC PEPTIDE (CHAIN B) CORRESPONDING TO YOPD56-65 REMARK 999 FROM YERSINIA ENTEROCOLITICA VIRULENCE PLASMID PYVE227 REMARK 999 FROM STRAIN W22703.N-TERMINALLY ACETYLATED AND C-TERMINALLY REMARK 999 AMIDATED DBREF 4AM9 A 21 163 UNP O87496 O87496_YEREN 21 163 DBREF 4AM9 B 56 65 UNP Q9R2G2 Q9R2G2_YEREN 56 65 SEQADV 4AM9 GLY A 16 UNP O87496 EXPRESSION TAG SEQADV 4AM9 PRO A 17 UNP O87496 EXPRESSION TAG SEQADV 4AM9 LEU A 18 UNP O87496 EXPRESSION TAG SEQADV 4AM9 GLY A 19 UNP O87496 EXPRESSION TAG SEQADV 4AM9 SER A 20 UNP O87496 EXPRESSION TAG SEQRES 1 A 148 GLY PRO LEU GLY SER GLY GLY GLY THR ILE ALA MET LEU SEQRES 2 A 148 ASN GLU ILE SER SER ASP THR LEU GLU GLN LEU TYR SER SEQRES 3 A 148 LEU ALA PHE ASN GLN TYR GLN SER GLY LYS TYR GLU ASP SEQRES 4 A 148 ALA HIS LYS VAL PHE GLN ALA LEU CYS VAL LEU ASP HIS SEQRES 5 A 148 TYR ASP SER ARG PHE PHE LEU GLY LEU GLY ALA CYS ARG SEQRES 6 A 148 GLN ALA MET GLY GLN TYR ASP LEU ALA ILE HIS SER TYR SEQRES 7 A 148 SER TYR GLY ALA VAL MET ASP ILE LYS GLU PRO ARG PHE SEQRES 8 A 148 PRO PHE HIS ALA ALA GLU CYS LEU LEU GLN LYS GLY GLU SEQRES 9 A 148 LEU ALA GLU ALA GLU SER GLY LEU PHE LEU ALA GLN GLU SEQRES 10 A 148 LEU ILE ALA ASN LYS PRO GLU PHE LYS GLU LEU SER THR SEQRES 11 A 148 ARG VAL SER SER MET LEU GLU ALA ILE LYS LEU LYS LYS SEQRES 12 A 148 GLU MET LYS HIS GLU SEQRES 1 B 11 ACE GLN VAL PRO GLU LEU ILE LYS PRO SER GLN HET ACE B 55 3 HET SO4 A1160 5 HET BU3 A1161 6 HET BU3 A1162 6 HET BU3 A1163 6 HET BU3 A1164 6 HET BU3 B1065 6 HETNAM ACE ACETYL GROUP HETNAM SO4 SULFATE ION HETNAM BU3 (R,R)-2,3-BUTANEDIOL FORMUL 2 ACE C2 H4 O FORMUL 3 SO4 O4 S 2- FORMUL 4 BU3 5(C4 H10 O2) FORMUL 9 HOH *17(H2 O) HELIX 1 1 THR A 35 SER A 49 1 15 HELIX 2 2 LYS A 51 ASP A 66 1 16 HELIX 3 3 ASP A 69 MET A 83 1 15 HELIX 4 4 GLN A 85 ASP A 100 1 16 HELIX 5 5 PRO A 104 LYS A 117 1 14 HELIX 6 6 GLU A 119 ALA A 135 1 17 HELIX 7 7 LYS A 137 GLU A 139 5 3 HELIX 8 8 PHE A 140 LYS A 158 1 19 LINK C ACE B 55 N GLN B 56 1555 1555 1.34 SITE 1 AC1 2 ARG A 80 HIS A 91 SITE 1 AC2 4 LYS A 51 TYR A 52 GLU A 53 ASP A 54 SITE 1 AC3 5 GLN A 85 TYR A 86 ASP A 87 LEU A 88 SITE 2 AC3 5 LYS A 117 SITE 1 AC4 4 GLU A 119 LEU A 120 ALA A 121 GLU A 122 SITE 1 AC5 1 PRO A 107 SITE 1 AC6 2 ILE B 61 LYS B 62 CRYST1 106.369 106.369 51.998 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009401 0.005428 0.000000 0.00000 SCALE2 0.000000 0.010856 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019232 0.00000