HEADER TRANSFERASE 08-MAR-12 4AMB TITLE CRYSTAL STRUCTURE OF THE GLYCOSYLTRANSFERASE SNOGD FROM STREPTOMYCES TITLE 2 NOGALATER COMPND MOL_ID: 1; COMPND 2 MOLECULE: SNOGD; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 13-390; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES NOGALATER; SOURCE 3 ORGANISM_TAXID: 38314; SOURCE 4 ATCC: 27451; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC-BSAI KEYWDS TRANSFERASE, POLYKETIDE BIOSYNTHESIS, GT1 FAMILY, NOGALAMYCIN EXPDTA X-RAY DIFFRACTION AUTHOR M.CLAESSON,V.SIITONEN,D.DOBRITZSCH,M.METSA-KETELA,G.SCHNEIDER REVDAT 2 20-DEC-23 4AMB 1 REMARK REVDAT 1 05-SEP-12 4AMB 0 JRNL AUTH M.CLAESSON,V.SIITONEN,D.DOBRITZSCH,M.METSA-KETELA, JRNL AUTH 2 G.SCHNEIDER JRNL TITL CRYSTAL STRUCTURE OF THE GLYCOSYLTRANSFERASE SNOGD FROM THE JRNL TITL 2 BIOSYNTHETIC PATHWAY OF THE NOGALAMYCIN IN STREPTOMYCES JRNL TITL 3 NOGALATER. JRNL REF FEBS J. V. 279 3251 2012 JRNL REFN ISSN 1742-464X JRNL PMID 22804797 JRNL DOI 10.1111/J.1742-4658.2012.08711.X REMARK 2 REMARK 2 RESOLUTION. 2.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0119 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 22091 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1207 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.62 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1276 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.07 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5434 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 115 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.55000 REMARK 3 B22 (A**2) : 1.77000 REMARK 3 B33 (A**2) : -0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.402 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.307 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.565 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.908 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.830 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5594 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3769 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7642 ; 1.497 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9187 ; 2.119 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 742 ; 5.094 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 206 ;36.035 ;22.427 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 830 ;17.551 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 52 ;23.220 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 885 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6301 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1099 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 4AMB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1290051585. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23310 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.620 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3D0Q REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% (W/V) PEG 3350, 0.1 M CITRATE PH REMARK 280 5.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 32.45550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 85.47750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.45550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 85.47750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 SER A -2 REMARK 465 SER A -1 REMARK 465 GLY A 0 REMARK 465 VAL A 1 REMARK 465 ASP A 2 REMARK 465 LEU A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 GLU A 6 REMARK 465 ASN A 7 REMARK 465 LEU A 8 REMARK 465 TYR A 9 REMARK 465 PHE A 10 REMARK 465 GLN A 11 REMARK 465 ASP A 77 REMARK 465 ASP A 78 REMARK 465 THR A 79 REMARK 465 ASP A 80 REMARK 465 VAL A 81 REMARK 465 THR A 82 REMARK 465 ASP A 83 REMARK 465 GLN A 326 REMARK 465 GLY A 390 REMARK 465 MET B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 SER B -2 REMARK 465 SER B -1 REMARK 465 GLY B 0 REMARK 465 VAL B 1 REMARK 465 ASP B 2 REMARK 465 LEU B 3 REMARK 465 GLY B 4 REMARK 465 THR B 5 REMARK 465 GLU B 6 REMARK 465 ASN B 7 REMARK 465 LEU B 8 REMARK 465 TYR B 9 REMARK 465 PHE B 10 REMARK 465 ASP B 77 REMARK 465 ASP B 78 REMARK 465 THR B 79 REMARK 465 ASP B 80 REMARK 465 VAL B 81 REMARK 465 THR B 82 REMARK 465 ASP B 83 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 HIS B 86 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CB ALA A 387 CB ALA A 387 2455 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 85 O - C - N ANGL. DEV. = -12.0 DEGREES REMARK 500 HIS B 86 C - N - CA ANGL. DEV. = -16.3 DEGREES REMARK 500 HIS B 86 O - C - N ANGL. DEV. = -10.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 50 33.07 -93.07 REMARK 500 SER A 65 58.24 -149.31 REMARK 500 ARG A 118 67.40 62.12 REMARK 500 SER A 152 57.22 -119.57 REMARK 500 ALA A 271 -9.51 -58.35 REMARK 500 HIS A 322 116.53 -163.98 REMARK 500 ASP B 50 32.76 -92.93 REMARK 500 SER B 65 58.02 -149.90 REMARK 500 MET B 85 -8.63 -52.99 REMARK 500 HIS B 86 -21.63 -143.20 REMARK 500 SER B 87 174.92 -58.01 REMARK 500 LEU B 90 73.93 -69.40 REMARK 500 ARG B 118 65.01 61.66 REMARK 500 ASP B 238 -22.04 113.58 REMARK 500 ASP B 327 171.89 -54.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DUD B 1391 DBREF 4AMB A 13 390 UNP Q9RN61 Q9RN61_STRNO 13 390 DBREF 4AMB B 13 390 UNP Q9RN61 Q9RN61_STRNO 13 390 SEQADV 4AMB MET A -9 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB HIS A -8 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB HIS A -7 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB HIS A -6 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB HIS A -5 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB HIS A -4 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB HIS A -3 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB SER A -2 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB SER A -1 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB GLY A 0 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB VAL A 1 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB ASP A 2 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB LEU A 3 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB GLY A 4 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB THR A 5 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB GLU A 6 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB ASN A 7 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB LEU A 8 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB TYR A 9 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB PHE A 10 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB GLN A 11 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB SER A 12 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB MET B -9 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB HIS B -8 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB HIS B -7 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB HIS B -6 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB HIS B -5 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB HIS B -4 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB HIS B -3 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB SER B -2 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB SER B -1 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB GLY B 0 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB VAL B 1 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB ASP B 2 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB LEU B 3 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB GLY B 4 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB THR B 5 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB GLU B 6 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB ASN B 7 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB LEU B 8 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB TYR B 9 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB PHE B 10 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB GLN B 11 UNP Q9RN61 EXPRESSION TAG SEQADV 4AMB SER B 12 UNP Q9RN61 EXPRESSION TAG SEQRES 1 A 400 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 400 GLY THR GLU ASN LEU TYR PHE GLN SER MET ARG ALA LEU SEQRES 3 A 400 PHE ILE THR SER PRO GLY LEU SER HIS ILE LEU PRO THR SEQRES 4 A 400 VAL PRO LEU ALA GLN ALA LEU ARG ALA LEU GLY HIS GLU SEQRES 5 A 400 VAL ARG TYR ALA THR GLY GLY ASP ILE ARG ALA VAL ALA SEQRES 6 A 400 GLU ALA GLY LEU CYS ALA VAL ASP VAL SER PRO GLY VAL SEQRES 7 A 400 ASN TYR ALA LYS LEU PHE VAL PRO ASP ASP THR ASP VAL SEQRES 8 A 400 THR ASP PRO MET HIS SER GLU GLY LEU GLY GLU GLY PHE SEQRES 9 A 400 PHE ALA GLU MET PHE ALA ARG VAL SER ALA VAL ALA VAL SEQRES 10 A 400 ASP GLY ALA LEU ARG THR ALA ARG SER TRP ARG PRO ASP SEQRES 11 A 400 LEU VAL VAL HIS THR PRO THR GLN GLY ALA GLY PRO LEU SEQRES 12 A 400 THR ALA ALA ALA LEU GLN LEU PRO CYS VAL GLU LEU PRO SEQRES 13 A 400 LEU GLY PRO ALA ASP SER GLU PRO GLY LEU GLY ALA LEU SEQRES 14 A 400 ILE ARG ARG ALA MET SER LYS ASP TYR GLU ARG HIS GLY SEQRES 15 A 400 VAL THR GLY GLU PRO THR GLY SER VAL ARG LEU THR THR SEQRES 16 A 400 THR PRO PRO SER VAL GLU ALA LEU LEU PRO GLU ASP ARG SEQRES 17 A 400 ARG SER PRO GLY ALA TRP PRO MET ARG TYR VAL PRO TYR SEQRES 18 A 400 ASN GLY GLY ALA VAL LEU PRO ASP TRP LEU PRO PRO ALA SEQRES 19 A 400 ALA GLY ARG ARG ARG ILE ALA VAL THR LEU GLY SER ILE SEQRES 20 A 400 ASP ALA LEU SER GLY GLY ILE ALA LYS LEU ALA PRO LEU SEQRES 21 A 400 PHE SER GLU VAL ALA ASP VAL ASP ALA GLU PHE VAL LEU SEQRES 22 A 400 THR LEU GLY GLY GLY ASP LEU ALA LEU LEU GLY GLU LEU SEQRES 23 A 400 PRO ALA ASN VAL ARG VAL VAL GLU TRP ILE PRO LEU GLY SEQRES 24 A 400 ALA LEU LEU GLU THR CYS ASP ALA ILE ILE HIS HIS GLY SEQRES 25 A 400 GLY SER GLY THR LEU LEU THR ALA LEU ALA ALA GLY VAL SEQRES 26 A 400 PRO GLN CYS VAL ILE PRO HIS GLY SER TYR GLN ASP THR SEQRES 27 A 400 ASN ARG ASP VAL LEU THR GLY LEU GLY ILE GLY PHE ASP SEQRES 28 A 400 ALA GLU ALA GLY SER LEU GLY ALA GLU GLN CYS ARG ARG SEQRES 29 A 400 LEU LEU ASP ASP ALA GLY LEU ARG GLU ALA ALA LEU ARG SEQRES 30 A 400 VAL ARG GLN GLU MET SER GLU MET PRO PRO PRO ALA GLU SEQRES 31 A 400 THR ALA ALA LYS LEU VAL ALA LEU ALA GLY SEQRES 1 B 400 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 400 GLY THR GLU ASN LEU TYR PHE GLN SER MET ARG ALA LEU SEQRES 3 B 400 PHE ILE THR SER PRO GLY LEU SER HIS ILE LEU PRO THR SEQRES 4 B 400 VAL PRO LEU ALA GLN ALA LEU ARG ALA LEU GLY HIS GLU SEQRES 5 B 400 VAL ARG TYR ALA THR GLY GLY ASP ILE ARG ALA VAL ALA SEQRES 6 B 400 GLU ALA GLY LEU CYS ALA VAL ASP VAL SER PRO GLY VAL SEQRES 7 B 400 ASN TYR ALA LYS LEU PHE VAL PRO ASP ASP THR ASP VAL SEQRES 8 B 400 THR ASP PRO MET HIS SER GLU GLY LEU GLY GLU GLY PHE SEQRES 9 B 400 PHE ALA GLU MET PHE ALA ARG VAL SER ALA VAL ALA VAL SEQRES 10 B 400 ASP GLY ALA LEU ARG THR ALA ARG SER TRP ARG PRO ASP SEQRES 11 B 400 LEU VAL VAL HIS THR PRO THR GLN GLY ALA GLY PRO LEU SEQRES 12 B 400 THR ALA ALA ALA LEU GLN LEU PRO CYS VAL GLU LEU PRO SEQRES 13 B 400 LEU GLY PRO ALA ASP SER GLU PRO GLY LEU GLY ALA LEU SEQRES 14 B 400 ILE ARG ARG ALA MET SER LYS ASP TYR GLU ARG HIS GLY SEQRES 15 B 400 VAL THR GLY GLU PRO THR GLY SER VAL ARG LEU THR THR SEQRES 16 B 400 THR PRO PRO SER VAL GLU ALA LEU LEU PRO GLU ASP ARG SEQRES 17 B 400 ARG SER PRO GLY ALA TRP PRO MET ARG TYR VAL PRO TYR SEQRES 18 B 400 ASN GLY GLY ALA VAL LEU PRO ASP TRP LEU PRO PRO ALA SEQRES 19 B 400 ALA GLY ARG ARG ARG ILE ALA VAL THR LEU GLY SER ILE SEQRES 20 B 400 ASP ALA LEU SER GLY GLY ILE ALA LYS LEU ALA PRO LEU SEQRES 21 B 400 PHE SER GLU VAL ALA ASP VAL ASP ALA GLU PHE VAL LEU SEQRES 22 B 400 THR LEU GLY GLY GLY ASP LEU ALA LEU LEU GLY GLU LEU SEQRES 23 B 400 PRO ALA ASN VAL ARG VAL VAL GLU TRP ILE PRO LEU GLY SEQRES 24 B 400 ALA LEU LEU GLU THR CYS ASP ALA ILE ILE HIS HIS GLY SEQRES 25 B 400 GLY SER GLY THR LEU LEU THR ALA LEU ALA ALA GLY VAL SEQRES 26 B 400 PRO GLN CYS VAL ILE PRO HIS GLY SER TYR GLN ASP THR SEQRES 27 B 400 ASN ARG ASP VAL LEU THR GLY LEU GLY ILE GLY PHE ASP SEQRES 28 B 400 ALA GLU ALA GLY SER LEU GLY ALA GLU GLN CYS ARG ARG SEQRES 29 B 400 LEU LEU ASP ASP ALA GLY LEU ARG GLU ALA ALA LEU ARG SEQRES 30 B 400 VAL ARG GLN GLU MET SER GLU MET PRO PRO PRO ALA GLU SEQRES 31 B 400 THR ALA ALA LYS LEU VAL ALA LEU ALA GLY HET DUD B1391 24 HETNAM DUD DEOXYURIDINE-5'-DIPHOSPHATE FORMUL 3 DUD C9 H14 N2 O11 P2 FORMUL 4 HOH *115(H2 O) HELIX 1 1 GLY A 22 LEU A 27 1 6 HELIX 2 2 THR A 29 LEU A 39 1 11 HELIX 3 3 ILE A 51 GLU A 56 1 6 HELIX 4 4 ASN A 69 VAL A 75 1 7 HELIX 5 5 GLY A 91 VAL A 105 1 15 HELIX 6 6 ALA A 106 ARG A 118 1 13 HELIX 7 7 GLY A 129 LEU A 138 1 10 HELIX 8 8 GLY A 148 SER A 152 5 5 HELIX 9 9 GLY A 155 MET A 164 1 10 HELIX 10 10 MET A 164 HIS A 171 1 8 HELIX 11 11 PRO A 187 LEU A 193 1 7 HELIX 12 12 PRO A 195 ARG A 199 5 5 HELIX 13 13 GLY A 242 LYS A 246 5 5 HELIX 14 14 LEU A 247 SER A 252 1 6 HELIX 15 15 GLU A 253 VAL A 257 5 5 HELIX 16 16 ASP A 269 LEU A 273 5 5 HELIX 17 17 PRO A 287 GLU A 293 1 7 HELIX 18 18 GLY A 303 GLY A 314 1 12 HELIX 19 19 ASN A 329 LEU A 336 1 8 HELIX 20 20 GLU A 343 LEU A 347 5 5 HELIX 21 21 GLY A 348 ASP A 358 1 11 HELIX 22 22 ASP A 358 GLU A 374 1 17 HELIX 23 23 PRO A 377 ALA A 389 1 13 HELIX 24 24 GLY B 22 LEU B 27 1 6 HELIX 25 25 THR B 29 LEU B 39 1 11 HELIX 26 26 ILE B 51 GLU B 56 1 6 HELIX 27 27 ASN B 69 VAL B 75 1 7 HELIX 28 28 GLY B 91 VAL B 105 1 15 HELIX 29 29 ALA B 106 ARG B 118 1 13 HELIX 30 30 GLY B 129 LEU B 138 1 10 HELIX 31 31 GLY B 148 SER B 152 5 5 HELIX 32 32 GLY B 155 MET B 164 1 10 HELIX 33 33 MET B 164 HIS B 171 1 8 HELIX 34 34 PRO B 187 LEU B 193 1 7 HELIX 35 35 PRO B 195 ARG B 199 5 5 HELIX 36 36 ILE B 244 LYS B 246 5 3 HELIX 37 37 LEU B 247 SER B 252 1 6 HELIX 38 38 GLU B 253 VAL B 257 5 5 HELIX 39 39 ASP B 269 LEU B 273 5 5 HELIX 40 40 PRO B 287 GLU B 293 1 7 HELIX 41 41 GLY B 303 GLY B 314 1 12 HELIX 42 42 THR B 328 LEU B 336 1 9 HELIX 43 43 GLU B 343 LEU B 347 5 5 HELIX 44 44 GLY B 348 ASP B 358 1 11 HELIX 45 45 ASP B 358 GLU B 374 1 17 HELIX 46 46 PRO B 377 GLY B 390 1 14 SHEET 1 AA 8 TRP A 204 PRO A 205 0 SHEET 2 AA 8 SER A 180 THR A 184 1 O ARG A 182 N TRP A 204 SHEET 3 AA 8 CYS A 142 GLU A 144 1 O CYS A 142 N VAL A 181 SHEET 4 AA 8 LEU A 121 HIS A 124 1 O VAL A 122 N VAL A 143 SHEET 5 AA 8 ARG A 14 ILE A 18 1 O LEU A 16 N VAL A 123 SHEET 6 AA 8 GLU A 42 THR A 47 1 O GLU A 42 N ALA A 15 SHEET 7 AA 8 CYS A 60 ASP A 63 1 O CYS A 60 N TYR A 45 SHEET 8 AA 8 ALA B 215 LEU B 217 1 O ALA B 215 N ALA A 61 SHEET 1 AB 8 ALA A 215 VAL A 216 0 SHEET 2 AB 8 CYS B 60 ASP B 63 1 N ALA B 61 O ALA A 215 SHEET 3 AB 8 GLU B 42 THR B 47 1 O TYR B 45 N VAL B 62 SHEET 4 AB 8 ARG B 14 ILE B 18 1 O ALA B 15 N ARG B 44 SHEET 5 AB 8 LEU B 121 HIS B 124 1 O LEU B 121 N LEU B 16 SHEET 6 AB 8 CYS B 142 GLU B 144 1 O VAL B 143 N HIS B 124 SHEET 7 AB 8 SER B 180 THR B 184 1 O VAL B 181 N GLU B 144 SHEET 8 AB 8 TRP B 204 PRO B 205 1 O TRP B 204 N THR B 184 SHEET 1 AC 6 VAL A 280 VAL A 283 0 SHEET 2 AC 6 GLU A 260 THR A 264 1 O PHE A 261 N ARG A 281 SHEET 3 AC 6 ARG A 229 THR A 233 1 O ILE A 230 N VAL A 262 SHEET 4 AC 6 ALA A 297 HIS A 300 1 O ALA A 297 N ALA A 231 SHEET 5 AC 6 GLN A 317 VAL A 319 1 O CYS A 318 N HIS A 300 SHEET 6 AC 6 GLY A 339 ASP A 341 1 O PHE A 340 N VAL A 319 SHEET 1 BA 6 VAL B 280 VAL B 283 0 SHEET 2 BA 6 GLU B 260 THR B 264 1 O PHE B 261 N ARG B 281 SHEET 3 BA 6 ARG B 229 THR B 233 1 O ILE B 230 N VAL B 262 SHEET 4 BA 6 ALA B 297 HIS B 300 1 O ALA B 297 N ALA B 231 SHEET 5 BA 6 GLN B 317 VAL B 319 1 O CYS B 318 N HIS B 300 SHEET 6 BA 6 GLY B 339 ASP B 341 1 O PHE B 340 N VAL B 319 SITE 1 AC1 16 HIS A 86 GLU A 88 SER B 24 ASN B 212 SITE 2 AC1 16 SER B 236 ILE B 237 THR B 264 TRP B 285 SITE 3 AC1 16 ILE B 286 PRO B 287 LEU B 288 HIS B 301 SITE 4 AC1 16 GLY B 303 SER B 304 GLY B 305 THR B 306 CRYST1 64.911 170.955 69.427 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015406 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005849 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014404 0.00000 MTRIX1 1 -0.852800 -0.522200 -0.002406 -43.56000 1 MTRIX2 1 -0.522200 0.852800 -0.003275 -12.34000 1 MTRIX3 1 0.003762 -0.001537 -1.000000 -14.85000 1