HEADER LIGASE/SIGNALLING PROTEIN 30-MAR-12 4AP4 TITLE RNF4 - UBCH5A - UBIQUITIN HETEROTRIMERIC COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN LIGASE RNF4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 131-195,131-195; COMPND 5 SYNONYM: RING FINGER PROTEIN 4, SMALL NUCLEAR RING FINGER PROTEIN, COMPND 6 PROTEIN SNURF; COMPND 7 EC: 6.3.2.-; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: THE RING DOMAIN IS DUPLICATED BUT AS A FUSED DIMER. COMPND 10 THAT IS THE SEQUENCE OF THE RING DOMAIN FROM RNF4 (RESIDUES 131 TO COMPND 11 194) IS LINKED BY A SINGLE GLYCINE RESIDUE TO ANOTHER RING DOMAIN COMPND 12 (RESIDUES 131 TO 194).; COMPND 13 MOL_ID: 2; COMPND 14 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2 D1; COMPND 15 CHAIN: B, E; COMPND 16 SYNONYM: UBCH5A, STIMULATOR OF FE TRANSPORT, SFT, UBC4/5 HOMOLOG, COMPND 17 UBCH5, UBIQUITIN CARRIER PROTEIN D1, UBIQUITIN-CONJUGATING ENZYME COMPND 18 E2(17)KB 1, UBIQUITIN-CONJUGATING ENZYME E2-17 KDA 1, UBIQUITIN- COMPND 19 PROTEIN LIGASE D1; COMPND 20 EC: 6.3.2.19; COMPND 21 ENGINEERED: YES; COMPND 22 MUTATION: YES; COMPND 23 OTHER_DETAILS: ISOPEPTIDE AMIDE LINKAGE OF C85K ON UBCH5A TO G76 OF COMPND 24 UBIQUITIN CHAIN B LINKED TO CHAIN C (UBIQUITIN) CHAIN E LINKED TO COMPND 25 CHAIN F (UBIQUITIN); COMPND 26 MOL_ID: 3; COMPND 27 MOLECULE: UBIQUITIN C; COMPND 28 CHAIN: C, F; COMPND 29 FRAGMENT: RESIDUES 76-152; COMPND 30 ENGINEERED: YES; COMPND 31 OTHER_DETAILS: ISOPEPTIDE AMIDE LINKED TO UBCH5A (CHAIN B AND CHAIN COMPND 32 E) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIGASE-SIGNALLING PROTEIN COMPLEX, CHIMERA EXPDTA X-RAY DIFFRACTION AUTHOR A.PLECHANOVOVA,R.T.HAY,M.H.TATHAM,E.JAFFRAY,J.H.NAISMITH REVDAT 6 20-DEC-23 4AP4 1 REMARK REVDAT 5 31-JUL-19 4AP4 1 REMARK LINK REVDAT 4 28-JUN-17 4AP4 1 REMARK REVDAT 3 10-OCT-12 4AP4 1 JRNL REVDAT 2 12-SEP-12 4AP4 1 AUTHOR JRNL REVDAT 1 25-JUL-12 4AP4 0 JRNL AUTH A.PLECHANOVOVA,E.JAFFRAY,M.H.TATHAM,J.H.NAISMITH,R.T.HAY JRNL TITL STRUCTURE OF A RING E3 LIGASE AND UBIQUITIN-LOADED E2 PRIMED JRNL TITL 2 FOR CATALYSIS JRNL REF NATURE V. 489 115 2012 JRNL REFN ISSN 0028-0836 JRNL PMID 22842904 JRNL DOI 10.1038/NATURE11376 REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0119 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 94.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 30468 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1625 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.21 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1887 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 116 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4581 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 137 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : -0.69000 REMARK 3 B33 (A**2) : 0.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.301 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.215 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.162 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.981 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4736 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3309 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6406 ; 1.248 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8091 ; 0.976 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 584 ; 6.201 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 205 ;33.463 ;24.098 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 839 ;14.419 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;20.838 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 709 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5171 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 900 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 131 A 193 REMARK 3 ORIGIN FOR THE GROUP (A): -17.7320 -8.7510 31.3430 REMARK 3 T TENSOR REMARK 3 T11: 0.1426 T22: 0.1024 REMARK 3 T33: 0.1306 T12: 0.0825 REMARK 3 T13: 0.0411 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 6.7172 L22: 2.7795 REMARK 3 L33: 8.2229 L12: -0.1728 REMARK 3 L13: -1.5159 L23: 0.3658 REMARK 3 S TENSOR REMARK 3 S11: -0.0248 S12: -0.2482 S13: 0.0807 REMARK 3 S21: -0.1320 S22: 0.1125 S23: -0.4113 REMARK 3 S31: 0.5551 S32: 0.8478 S33: -0.0877 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 194 A 210 REMARK 3 ORIGIN FOR THE GROUP (A): -18.5170 5.9690 17.6700 REMARK 3 T TENSOR REMARK 3 T11: 0.4209 T22: 0.1306 REMARK 3 T33: 0.2415 T12: -0.0129 REMARK 3 T13: 0.0834 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 4.8383 L22: 15.9537 REMARK 3 L33: 19.4474 L12: -2.0592 REMARK 3 L13: -4.6443 L23: -1.9028 REMARK 3 S TENSOR REMARK 3 S11: -0.0428 S12: -0.5882 S13: 0.1969 REMARK 3 S21: 2.1836 S22: 0.0887 S23: -0.5242 REMARK 3 S31: -0.7602 S32: 1.1804 S33: -0.0459 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 211 A 259 REMARK 3 ORIGIN FOR THE GROUP (A): -24.3480 -4.3370 13.0860 REMARK 3 T TENSOR REMARK 3 T11: 0.0728 T22: 0.0544 REMARK 3 T33: 0.2230 T12: -0.0046 REMARK 3 T13: 0.1099 T23: 0.0310 REMARK 3 L TENSOR REMARK 3 L11: 3.1936 L22: 3.8248 REMARK 3 L33: 5.0642 L12: -0.6905 REMARK 3 L13: -1.6951 L23: -1.1271 REMARK 3 S TENSOR REMARK 3 S11: 0.0240 S12: 0.1590 S13: -0.1255 REMARK 3 S21: 0.2067 S22: 0.1198 S23: 0.6028 REMARK 3 S31: 0.1323 S32: -0.5153 S33: -0.1439 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -3 B 28 REMARK 3 ORIGIN FOR THE GROUP (A): -12.9630 14.4790 4.4020 REMARK 3 T TENSOR REMARK 3 T11: 0.0391 T22: 0.0980 REMARK 3 T33: 0.1608 T12: 0.0014 REMARK 3 T13: 0.0226 T23: -0.0666 REMARK 3 L TENSOR REMARK 3 L11: 10.5697 L22: 3.4159 REMARK 3 L33: 3.1504 L12: -0.1022 REMARK 3 L13: -4.2339 L23: 0.7130 REMARK 3 S TENSOR REMARK 3 S11: 0.1828 S12: -0.9072 S13: 0.7875 REMARK 3 S21: 0.0024 S22: 0.1088 S23: 0.1250 REMARK 3 S31: -0.2560 S32: 0.2372 S33: -0.2916 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 29 B 126 REMARK 3 ORIGIN FOR THE GROUP (A): -7.2120 2.8840 -7.7340 REMARK 3 T TENSOR REMARK 3 T11: 0.0567 T22: 0.0107 REMARK 3 T33: 0.0491 T12: 0.0000 REMARK 3 T13: -0.0072 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 3.0283 L22: 2.2692 REMARK 3 L33: 2.0232 L12: -0.1572 REMARK 3 L13: -1.7757 L23: 0.0667 REMARK 3 S TENSOR REMARK 3 S11: -0.0241 S12: 0.1332 S13: -0.0899 REMARK 3 S21: -0.3237 S22: 0.0140 S23: 0.0001 REMARK 3 S31: 0.1060 S32: -0.0218 S33: 0.0101 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 127 B 147 REMARK 3 ORIGIN FOR THE GROUP (A): 8.2600 -0.3020 -17.3670 REMARK 3 T TENSOR REMARK 3 T11: 0.2098 T22: 0.1547 REMARK 3 T33: 0.1592 T12: -0.0330 REMARK 3 T13: 0.1522 T23: -0.0737 REMARK 3 L TENSOR REMARK 3 L11: 3.3342 L22: 17.2141 REMARK 3 L33: 3.8508 L12: -3.1212 REMARK 3 L13: -0.8706 L23: 2.0994 REMARK 3 S TENSOR REMARK 3 S11: -0.0115 S12: 0.0149 S13: -0.2022 REMARK 3 S21: -0.8648 S22: 0.1144 S23: -0.8949 REMARK 3 S31: 0.2317 S32: 0.5206 S33: -0.1029 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 0 C 48 REMARK 3 ORIGIN FOR THE GROUP (A): 0.2260 -5.7340 12.5580 REMARK 3 T TENSOR REMARK 3 T11: 0.1211 T22: 0.2036 REMARK 3 T33: 0.1464 T12: 0.0943 REMARK 3 T13: -0.0451 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 5.1506 L22: 6.3777 REMARK 3 L33: 2.4190 L12: 1.0785 REMARK 3 L13: -1.3529 L23: 0.5446 REMARK 3 S TENSOR REMARK 3 S11: -0.1552 S12: -0.7035 S13: -0.2237 REMARK 3 S21: 0.7156 S22: 0.0707 S23: -0.5839 REMARK 3 S31: 0.3313 S32: 0.5264 S33: 0.0845 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 49 C 56 REMARK 3 ORIGIN FOR THE GROUP (A): 6.3560 -10.4230 4.1560 REMARK 3 T TENSOR REMARK 3 T11: 0.2729 T22: 0.2848 REMARK 3 T33: 0.5312 T12: 0.1562 REMARK 3 T13: 0.0604 T23: -0.0647 REMARK 3 L TENSOR REMARK 3 L11: 13.5319 L22: 30.9570 REMARK 3 L33: 22.0326 L12: -5.4401 REMARK 3 L13: 12.9976 L23: -19.3759 REMARK 3 S TENSOR REMARK 3 S11: 0.7475 S12: 0.4892 S13: -1.0517 REMARK 3 S21: -1.9292 S22: -0.3666 S23: -0.5358 REMARK 3 S31: 1.8611 S32: 0.6636 S33: -0.3809 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 57 C 76 REMARK 3 ORIGIN FOR THE GROUP (A): 5.7880 -2.4190 8.5800 REMARK 3 T TENSOR REMARK 3 T11: 0.0827 T22: 0.2901 REMARK 3 T33: 0.3456 T12: 0.0402 REMARK 3 T13: -0.0337 T23: -0.0169 REMARK 3 L TENSOR REMARK 3 L11: 3.9522 L22: 4.5508 REMARK 3 L33: 6.0763 L12: -1.5445 REMARK 3 L13: -0.4798 L23: -0.5513 REMARK 3 S TENSOR REMARK 3 S11: -0.2643 S12: -0.6003 S13: -0.1796 REMARK 3 S21: 0.3079 S22: 0.2159 S23: -1.0270 REMARK 3 S31: -0.1141 S32: 1.0867 S33: 0.0484 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 32 REMARK 3 ORIGIN FOR THE GROUP (A): -17.6120 3.0640 50.3070 REMARK 3 T TENSOR REMARK 3 T11: 0.2844 T22: 0.6984 REMARK 3 T33: 0.2842 T12: -0.1625 REMARK 3 T13: -0.0198 T23: -0.2489 REMARK 3 L TENSOR REMARK 3 L11: 4.5929 L22: 14.5592 REMARK 3 L33: 10.9099 L12: 1.9915 REMARK 3 L13: 1.0125 L23: -0.0622 REMARK 3 S TENSOR REMARK 3 S11: 0.2188 S12: -0.8758 S13: 0.3109 REMARK 3 S21: -0.2800 S22: 0.2812 S23: -0.4924 REMARK 3 S31: -0.9494 S32: 1.9375 S33: -0.5000 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 33 E 119 REMARK 3 ORIGIN FOR THE GROUP (A): -31.7760 -4.9610 53.8290 REMARK 3 T TENSOR REMARK 3 T11: 0.2752 T22: 0.0977 REMARK 3 T33: 0.0408 T12: -0.0006 REMARK 3 T13: -0.0642 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 2.5454 L22: 2.2027 REMARK 3 L33: 6.3143 L12: -0.2971 REMARK 3 L13: -1.6245 L23: 0.7250 REMARK 3 S TENSOR REMARK 3 S11: -0.0276 S12: -0.2519 S13: -0.0323 REMARK 3 S21: 0.3236 S22: 0.0956 S23: -0.1959 REMARK 3 S31: 0.8069 S32: -0.0465 S33: -0.0680 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 120 E 147 REMARK 3 ORIGIN FOR THE GROUP (A): -47.7310 -3.5300 63.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.3525 T22: 0.5645 REMARK 3 T33: 0.1710 T12: -0.1278 REMARK 3 T13: 0.0411 T23: 0.0392 REMARK 3 L TENSOR REMARK 3 L11: 5.7272 L22: 8.8802 REMARK 3 L33: 6.7846 L12: 1.0507 REMARK 3 L13: -0.6810 L23: 3.4821 REMARK 3 S TENSOR REMARK 3 S11: -0.0940 S12: -0.0451 S13: 0.0947 REMARK 3 S21: 0.4711 S22: -0.1911 S23: 1.1632 REMARK 3 S31: 0.4883 S32: -1.5325 S33: 0.2850 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 0 F 22 REMARK 3 ORIGIN FOR THE GROUP (A): -35.8840 9.5400 33.1030 REMARK 3 T TENSOR REMARK 3 T11: 0.2570 T22: 0.1876 REMARK 3 T33: 0.1065 T12: 0.1006 REMARK 3 T13: 0.0510 T23: 0.0279 REMARK 3 L TENSOR REMARK 3 L11: 17.8351 L22: 7.6739 REMARK 3 L33: 8.0639 L12: -1.6868 REMARK 3 L13: 3.2142 L23: 0.5209 REMARK 3 S TENSOR REMARK 3 S11: -0.0317 S12: 0.5712 S13: 1.2318 REMARK 3 S21: -0.7409 S22: -0.2160 S23: -0.3694 REMARK 3 S31: -0.8785 S32: -0.8048 S33: 0.2478 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 23 F 54 REMARK 3 ORIGIN FOR THE GROUP (A): -39.7520 0.3980 35.9440 REMARK 3 T TENSOR REMARK 3 T11: 0.0401 T22: 0.2518 REMARK 3 T33: 0.0599 T12: -0.0037 REMARK 3 T13: 0.0143 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 4.7068 L22: 6.4575 REMARK 3 L33: 11.8797 L12: -3.2047 REMARK 3 L13: -4.4280 L23: 4.0707 REMARK 3 S TENSOR REMARK 3 S11: 0.0630 S12: 0.3430 S13: -0.1189 REMARK 3 S21: 0.1427 S22: -0.3334 S23: 0.2963 REMARK 3 S31: 0.2106 S32: -1.3061 S33: 0.2704 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 55 F 70 REMARK 3 ORIGIN FOR THE GROUP (A): -41.3310 10.3420 38.9600 REMARK 3 T TENSOR REMARK 3 T11: 0.3956 T22: 0.4857 REMARK 3 T33: 0.7499 T12: 0.2419 REMARK 3 T13: -0.1351 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 3.9869 L22: 5.3059 REMARK 3 L33: 8.3009 L12: 4.4895 REMARK 3 L13: 1.1523 L23: 1.7253 REMARK 3 S TENSOR REMARK 3 S11: -0.0098 S12: -0.2073 S13: 0.6218 REMARK 3 S21: 0.0361 S22: -0.3421 S23: 0.3356 REMARK 3 S31: -1.2781 S32: -1.4922 S33: 0.3519 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 71 F 76 REMARK 3 ORIGIN FOR THE GROUP (A): -35.8520 -8.2070 43.2770 REMARK 3 T TENSOR REMARK 3 T11: 0.4440 T22: 0.5590 REMARK 3 T33: 0.5812 T12: 0.0935 REMARK 3 T13: -0.1701 T23: -0.2693 REMARK 3 L TENSOR REMARK 3 L11: 21.2870 L22: 36.0867 REMARK 3 L33: 56.7639 L12: 22.6575 REMARK 3 L13: -25.4025 L23: -9.2508 REMARK 3 S TENSOR REMARK 3 S11: -0.4124 S12: 1.0109 S13: 0.3523 REMARK 3 S21: -0.0459 S22: 0.1113 S23: 0.9159 REMARK 3 S31: 1.1284 S32: -2.5544 S33: 0.3010 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED REMARK 4 REMARK 4 4AP4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1290051938. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32159 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.210 REMARK 200 RESOLUTION RANGE LOW (A) : 190.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : 0.03000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 43.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.17000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER FOR MR REMARK 200 STARTING MODEL: PDB ENTRIES 2YH0 1UBQ 2XEU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.24000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.82500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.54500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 94.82500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.24000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.54500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN B, SER 22 TO ARG REMARK 400 ENGINEERED RESIDUE IN CHAIN B, CYS 85 TO LYS REMARK 400 ENGINEERED RESIDUE IN CHAIN E, SER 22 TO ARG REMARK 400 ENGINEERED RESIDUE IN CHAIN E, CYS 85 TO LYS REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 127 REMARK 465 ALA A 128 REMARK 465 MET A 129 REMARK 465 GLY A 130 REMARK 465 GLY B -5 REMARK 465 ALA B -4 REMARK 465 GLY C -3 REMARK 465 ALA C -2 REMARK 465 MET C -1 REMARK 465 GLY C 0 REMARK 465 GLY E -5 REMARK 465 ALA E -4 REMARK 465 GLY E -3 REMARK 465 SER E -2 REMARK 465 GLY E -1 REMARK 465 SER E 0 REMARK 465 GLY F -3 REMARK 465 ALA F -2 REMARK 465 MET F -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 85 C GLY C 76 1.32 REMARK 500 NZ LYS E 85 C GLY F 76 1.32 REMARK 500 NZ LYS B 85 O GLY C 76 2.16 REMARK 500 OD2 ASP E 29 ND1 HIS E 32 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 138 -63.75 -91.26 REMARK 500 ASN A 185 164.75 -48.81 REMARK 500 ASN A 240 30.15 -89.83 REMARK 500 ARG B 90 -104.48 -136.07 REMARK 500 LYS C 63 111.87 -28.20 REMARK 500 HIS E 75 140.95 -171.19 REMARK 500 ARG E 90 -104.34 -135.16 REMARK 500 LYS F 63 111.61 -26.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 800 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 136 SG REMARK 620 2 CYS A 139 SG 107.6 REMARK 620 3 CYS A 163 SG 117.5 121.3 REMARK 620 4 CYS A 166 SG 106.0 106.0 95.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 158 SG REMARK 620 2 HIS A 160 ND1 112.2 REMARK 620 3 CYS A 177 SG 105.3 108.4 REMARK 620 4 CYS A 180 SG 102.6 108.3 119.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 201 SG REMARK 620 2 CYS A 204 SG 107.5 REMARK 620 3 CYS A 228 SG 114.9 114.0 REMARK 620 4 CYS A 231 SG 109.9 110.7 99.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 803 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 223 SG REMARK 620 2 HIS A 225 ND1 109.8 REMARK 620 3 CYS A 242 SG 108.8 110.1 REMARK 620 4 CYS A 245 SG 100.5 108.2 118.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 800 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 803 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2C4P RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN UBIQUITIN-CONJUGATING ENZYME UBCH5A REMARK 900 RELATED ID: 2YHO RELATED DB: PDB REMARK 900 THE IDOL-UBE2D COMPLEX MEDIATES STEROL-DEPENDENT DEGRADATION OF THE REMARK 900 LDL RECEPTOR REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE PROTEIN IS A FUSION DIMER OF TWO MOLECULES OF RNF4. REMARK 999 EACH DOMAIN IS SER 131 TO ILE 194. THE N-TERMINUS HAS A REMARK 999 GAMG EXTENSION. GLY 195 LINKS THE TWO SEQUENCES. THUS SER REMARK 999 196 CORRESPONDS TO SER 131 OF THE SEQUENCE REMARK 999 N-TERMINAL GAGSGS FROM CLONING S22R AND C85K MUTATION DBREF 4AP4 A 131 194 UNP O88846 RNF4_RAT 131 194 DBREF 4AP4 A 196 259 UNP O88846 RNF4_RAT 131 194 DBREF 4AP4 B 1 147 UNP P51668 UB2D1_HUMAN 1 147 DBREF 4AP4 C 0 76 UNP F5H7Y5 F5H7Y5_HUMAN 76 152 DBREF 4AP4 E 1 147 UNP P51668 UB2D1_HUMAN 1 147 DBREF 4AP4 F 0 76 UNP F5H7Y5 F5H7Y5_HUMAN 76 152 SEQADV 4AP4 GLY A 127 UNP O88846 EXPRESSION TAG SEQADV 4AP4 ALA A 128 UNP O88846 EXPRESSION TAG SEQADV 4AP4 MET A 129 UNP O88846 EXPRESSION TAG SEQADV 4AP4 GLY A 130 UNP O88846 EXPRESSION TAG SEQADV 4AP4 GLY A 195 UNP O88846 LINKER SEQADV 4AP4 GLY B -5 UNP P51668 EXPRESSION TAG SEQADV 4AP4 ALA B -4 UNP P51668 EXPRESSION TAG SEQADV 4AP4 GLY B -3 UNP P51668 EXPRESSION TAG SEQADV 4AP4 SER B -2 UNP P51668 EXPRESSION TAG SEQADV 4AP4 GLY B -1 UNP P51668 EXPRESSION TAG SEQADV 4AP4 SER B 0 UNP P51668 EXPRESSION TAG SEQADV 4AP4 ARG B 22 UNP P51668 SER 22 ENGINEERED MUTATION SEQADV 4AP4 LYS B 85 UNP P51668 CYS 85 ENGINEERED MUTATION SEQADV 4AP4 GLY C -3 UNP F5H7Y5 EXPRESSION TAG SEQADV 4AP4 ALA C -2 UNP F5H7Y5 EXPRESSION TAG SEQADV 4AP4 MET C -1 UNP F5H7Y5 EXPRESSION TAG SEQADV 4AP4 GLY E -5 UNP P51668 EXPRESSION TAG SEQADV 4AP4 ALA E -4 UNP P51668 EXPRESSION TAG SEQADV 4AP4 GLY E -3 UNP P51668 EXPRESSION TAG SEQADV 4AP4 SER E -2 UNP P51668 EXPRESSION TAG SEQADV 4AP4 GLY E -1 UNP P51668 EXPRESSION TAG SEQADV 4AP4 SER E 0 UNP P51668 EXPRESSION TAG SEQADV 4AP4 ARG E 22 UNP P51668 SER 22 ENGINEERED MUTATION SEQADV 4AP4 LYS E 85 UNP P51668 CYS 85 ENGINEERED MUTATION SEQADV 4AP4 GLY F -3 UNP F5H7Y5 EXPRESSION TAG SEQADV 4AP4 ALA F -2 UNP F5H7Y5 EXPRESSION TAG SEQADV 4AP4 MET F -1 UNP F5H7Y5 EXPRESSION TAG SEQRES 1 A 133 GLY ALA MET GLY SER GLY THR VAL SER CYS PRO ILE CYS SEQRES 2 A 133 MET ASP GLY TYR SER GLU ILE VAL GLN ASN GLY ARG LEU SEQRES 3 A 133 ILE VAL SER THR GLU CYS GLY HIS VAL PHE CYS SER GLN SEQRES 4 A 133 CYS LEU ARG ASP SER LEU LYS ASN ALA ASN THR CYS PRO SEQRES 5 A 133 THR CYS ARG LYS LYS ILE ASN HIS LYS ARG TYR HIS PRO SEQRES 6 A 133 ILE TYR ILE GLY SER GLY THR VAL SER CYS PRO ILE CYS SEQRES 7 A 133 MET ASP GLY TYR SER GLU ILE VAL GLN ASN GLY ARG LEU SEQRES 8 A 133 ILE VAL SER THR GLU CYS GLY HIS VAL PHE CYS SER GLN SEQRES 9 A 133 CYS LEU ARG ASP SER LEU LYS ASN ALA ASN THR CYS PRO SEQRES 10 A 133 THR CYS ARG LYS LYS ILE ASN HIS LYS ARG TYR HIS PRO SEQRES 11 A 133 ILE TYR ILE SEQRES 1 B 153 GLY ALA GLY SER GLY SER MET ALA LEU LYS ARG ILE GLN SEQRES 2 B 153 LYS GLU LEU SER ASP LEU GLN ARG ASP PRO PRO ALA HIS SEQRES 3 B 153 CYS ARG ALA GLY PRO VAL GLY ASP ASP LEU PHE HIS TRP SEQRES 4 B 153 GLN ALA THR ILE MET GLY PRO PRO ASP SER ALA TYR GLN SEQRES 5 B 153 GLY GLY VAL PHE PHE LEU THR VAL HIS PHE PRO THR ASP SEQRES 6 B 153 TYR PRO PHE LYS PRO PRO LYS ILE ALA PHE THR THR LYS SEQRES 7 B 153 ILE TYR HIS PRO ASN ILE ASN SER ASN GLY SER ILE LYS SEQRES 8 B 153 LEU ASP ILE LEU ARG SER GLN TRP SER PRO ALA LEU THR SEQRES 9 B 153 VAL SER LYS VAL LEU LEU SER ILE CYS SER LEU LEU CYS SEQRES 10 B 153 ASP PRO ASN PRO ASP ASP PRO LEU VAL PRO ASP ILE ALA SEQRES 11 B 153 GLN ILE TYR LYS SER ASP LYS GLU LYS TYR ASN ARG HIS SEQRES 12 B 153 ALA ARG GLU TRP THR GLN LYS TYR ALA MET SEQRES 1 C 80 GLY ALA MET GLY MET GLN ILE PHE VAL LYS THR LEU THR SEQRES 2 C 80 GLY LYS THR ILE THR LEU GLU VAL GLU PRO SER ASP THR SEQRES 3 C 80 ILE GLU ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY SEQRES 4 C 80 ILE PRO PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS SEQRES 5 C 80 GLN LEU GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE SEQRES 6 C 80 GLN LYS GLU SER THR LEU HIS LEU VAL LEU ARG LEU ARG SEQRES 7 C 80 GLY GLY SEQRES 1 E 153 GLY ALA GLY SER GLY SER MET ALA LEU LYS ARG ILE GLN SEQRES 2 E 153 LYS GLU LEU SER ASP LEU GLN ARG ASP PRO PRO ALA HIS SEQRES 3 E 153 CYS ARG ALA GLY PRO VAL GLY ASP ASP LEU PHE HIS TRP SEQRES 4 E 153 GLN ALA THR ILE MET GLY PRO PRO ASP SER ALA TYR GLN SEQRES 5 E 153 GLY GLY VAL PHE PHE LEU THR VAL HIS PHE PRO THR ASP SEQRES 6 E 153 TYR PRO PHE LYS PRO PRO LYS ILE ALA PHE THR THR LYS SEQRES 7 E 153 ILE TYR HIS PRO ASN ILE ASN SER ASN GLY SER ILE LYS SEQRES 8 E 153 LEU ASP ILE LEU ARG SER GLN TRP SER PRO ALA LEU THR SEQRES 9 E 153 VAL SER LYS VAL LEU LEU SER ILE CYS SER LEU LEU CYS SEQRES 10 E 153 ASP PRO ASN PRO ASP ASP PRO LEU VAL PRO ASP ILE ALA SEQRES 11 E 153 GLN ILE TYR LYS SER ASP LYS GLU LYS TYR ASN ARG HIS SEQRES 12 E 153 ALA ARG GLU TRP THR GLN LYS TYR ALA MET SEQRES 1 F 80 GLY ALA MET GLY MET GLN ILE PHE VAL LYS THR LEU THR SEQRES 2 F 80 GLY LYS THR ILE THR LEU GLU VAL GLU PRO SER ASP THR SEQRES 3 F 80 ILE GLU ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY SEQRES 4 F 80 ILE PRO PRO ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS SEQRES 5 F 80 GLN LEU GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE SEQRES 6 F 80 GLN LYS GLU SER THR LEU HIS LEU VAL LEU ARG LEU ARG SEQRES 7 F 80 GLY GLY HET ZN A 800 1 HET ZN A 801 1 HET ZN A 802 1 HET ZN A 803 1 HETNAM ZN ZINC ION FORMUL 6 ZN 4(ZN 2+) FORMUL 10 HOH *137(H2 O) HELIX 1 1 GLY A 142 ASN A 149 1 8 HELIX 2 2 SER A 164 LYS A 172 1 9 HELIX 3 3 GLY A 207 ASN A 214 1 8 HELIX 4 4 SER A 229 ALA A 239 1 11 HELIX 5 5 ASN A 250 LYS A 252 5 3 HELIX 6 6 GLY B -1 ASP B 16 1 18 HELIX 7 7 ASP B 87 ARG B 90 5 4 HELIX 8 8 THR B 98 CYS B 111 1 14 HELIX 9 9 VAL B 120 ASP B 130 1 11 HELIX 10 10 ASP B 130 ALA B 146 1 17 HELIX 11 11 THR C 22 GLY C 35 1 14 HELIX 12 12 PRO C 37 ASP C 39 5 3 HELIX 13 13 LEU C 56 ASN C 60 5 5 HELIX 14 14 MET E 1 ASP E 16 1 16 HELIX 15 15 ASP E 87 ARG E 90 5 4 HELIX 16 16 THR E 98 CYS E 111 1 14 HELIX 17 17 VAL E 120 ASP E 130 1 11 HELIX 18 18 ASP E 130 ALA E 146 1 17 HELIX 19 19 THR F 22 GLY F 35 1 14 HELIX 20 20 PRO F 37 ASP F 39 5 3 HELIX 21 21 LEU F 56 ASN F 60 5 5 SHEET 1 AA 3 VAL A 161 CYS A 163 0 SHEET 2 AA 3 ILE A 153 THR A 156 -1 O VAL A 154 N PHE A 162 SHEET 3 AA 3 TYR A 189 PRO A 191 -1 O HIS A 190 N SER A 155 SHEET 1 AB 3 VAL A 226 CYS A 228 0 SHEET 2 AB 3 ILE A 218 THR A 221 -1 O VAL A 219 N PHE A 227 SHEET 3 AB 3 TYR A 254 ILE A 257 -1 O HIS A 255 N SER A 220 SHEET 1 BA 4 CYS B 21 PRO B 25 0 SHEET 2 BA 4 HIS B 32 MET B 38 -1 O GLN B 34 N GLY B 24 SHEET 3 BA 4 VAL B 49 HIS B 55 -1 O PHE B 50 N ILE B 37 SHEET 4 BA 4 LYS B 66 PHE B 69 -1 O LYS B 66 N HIS B 55 SHEET 1 CA 5 THR C 12 GLU C 16 0 SHEET 2 CA 5 GLN C 2 LYS C 6 -1 O ILE C 3 N LEU C 15 SHEET 3 CA 5 THR C 66 LEU C 71 1 O LEU C 67 N LYS C 6 SHEET 4 CA 5 GLN C 41 PHE C 45 -1 O ARG C 42 N VAL C 70 SHEET 5 CA 5 LYS C 48 GLN C 49 -1 O LYS C 48 N PHE C 45 SHEET 1 EA 4 CYS E 21 PRO E 25 0 SHEET 2 EA 4 HIS E 32 MET E 38 -1 O GLN E 34 N GLY E 24 SHEET 3 EA 4 VAL E 49 HIS E 55 -1 O PHE E 50 N ILE E 37 SHEET 4 EA 4 LYS E 66 PHE E 69 -1 O LYS E 66 N HIS E 55 SHEET 1 FA 5 THR F 12 VAL F 17 0 SHEET 2 FA 5 MET F 1 LYS F 6 -1 O MET F 1 N VAL F 17 SHEET 3 FA 5 THR F 66 LEU F 71 1 O LEU F 67 N LYS F 6 SHEET 4 FA 5 GLN F 41 PHE F 45 -1 O ARG F 42 N VAL F 70 SHEET 5 FA 5 LYS F 48 GLN F 49 -1 O LYS F 48 N PHE F 45 LINK SG CYS A 136 ZN ZN A 800 1555 1555 2.38 LINK SG CYS A 139 ZN ZN A 800 1555 1555 2.37 LINK SG CYS A 158 ZN ZN A 801 1555 1555 2.40 LINK ND1 HIS A 160 ZN ZN A 801 1555 1555 2.07 LINK SG CYS A 163 ZN ZN A 800 1555 1555 2.37 LINK SG CYS A 166 ZN ZN A 800 1555 1555 2.35 LINK SG CYS A 177 ZN ZN A 801 1555 1555 2.36 LINK SG CYS A 180 ZN ZN A 801 1555 1555 2.32 LINK SG CYS A 201 ZN ZN A 802 1555 1555 2.38 LINK SG CYS A 204 ZN ZN A 802 1555 1555 2.36 LINK SG CYS A 223 ZN ZN A 803 1555 1555 2.34 LINK ND1 HIS A 225 ZN ZN A 803 1555 1555 2.08 LINK SG CYS A 228 ZN ZN A 802 1555 1555 2.39 LINK SG CYS A 231 ZN ZN A 802 1555 1555 2.31 LINK SG CYS A 242 ZN ZN A 803 1555 1555 2.33 LINK SG CYS A 245 ZN ZN A 803 1555 1555 2.40 CISPEP 1 TYR B 60 PRO B 61 0 9.57 CISPEP 2 TYR E 60 PRO E 61 0 6.82 SITE 1 AC1 4 CYS A 136 CYS A 139 CYS A 163 CYS A 166 SITE 1 AC2 4 CYS A 158 HIS A 160 CYS A 177 CYS A 180 SITE 1 AC3 4 CYS A 201 CYS A 204 CYS A 228 CYS A 231 SITE 1 AC4 4 CYS A 223 HIS A 225 CYS A 242 CYS A 245 CRYST1 50.480 65.090 189.650 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019810 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015363 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005273 0.00000