HEADER VIRAL PROTEIN 19-APR-12 4AQQ TITLE DODECAHEDRON FORMED OF PENTON BASE PROTEIN FROM ADENOVIRUS AD3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: L2 PROTEIN III (PENTON BASE); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-542; COMPND 5 SYNONYM: PENTON PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ADENOVIRUS 3; SOURCE 3 ORGANISM_TAXID: 45659; SOURCE 4 STRAIN: UNIDENTIFIED; SOURCE 5 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 6 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BAC PAC6 KEYWDS VIRAL PROTEIN, CAPSID PROTEIN, DSDNA VIRUS, VIRUS-LIKE PARTICLE, KEYWDS 2 STRAND SWAPPING EXPDTA X-RAY DIFFRACTION AUTHOR W.P.BURMEISTER,E.SZOLAJSKA,M.ZOCHOWSKA,B.NERLO,I.ANDREEV,G.SCHOEHN, AUTHOR 2 J.-P.ANDRIEU,P.FENDER,A.NASKALSKA,C.ZUBIETA,S.CUSACK,J.CHROBOCZEK REVDAT 4 20-DEC-23 4AQQ 1 REMARK LINK REVDAT 3 08-MAY-19 4AQQ 1 REMARK REVDAT 2 03-APR-19 4AQQ 1 SOURCE REVDAT 1 24-OCT-12 4AQQ 0 JRNL AUTH E.SZOLAJSKA,W.P.BURMEISTER,M.ZOCHOWSKA,B.NERLO,I.ANDREEV, JRNL AUTH 2 G.SCHOEHN,J.P.ANDRIEU,P.FENDER,A.NASKALSKA,C.ZUBIETA, JRNL AUTH 3 S.CUSACK,J.CHROBOCZEK JRNL TITL THE STRUCTURAL BASIS FOR THE INTEGRITY OF ADENOVIRUS AD3 JRNL TITL 2 DODECAHEDRON. JRNL REF PLOS ONE V. 7 46075 2012 JRNL REFN ESSN 1932-6203 JRNL PMID 23049939 JRNL DOI 10.1371/JOURNAL.PONE.0046075 REMARK 2 REMARK 2 RESOLUTION. 4.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0116 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 242.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 64099 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.291 REMARK 3 R VALUE (WORKING SET) : 0.291 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3418 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 4.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 4.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4489 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE SET COUNT : 267 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3724 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.517 REMARK 3 ESU BASED ON FREE R VALUE (A): 1.513 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.000 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.001 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.830 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.817 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT PROTOCOL USED CNS_SOLVE 1.1 REMARK 3 REFINEMENT FOR POSITIONAL AND B-FACTOR REFINEMENT IMPOSING REMARK 3 STRICT 60-FOLD NCS FOLLOWED BY A RIGID BODY CYCLE (USING AN REMARK 3 EXPANDED MODEL IN REFMAC (REPORTED ABOVE). REMARK 4 REMARK 4 4AQQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-APR-12. REMARK 100 THE DEPOSITION ID IS D_1290052107. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : DIAMOND (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH MAR133 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67599 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.750 REMARK 200 RESOLUTION RANGE LOW (A) : 69.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.21200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 3.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 5.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.58200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2C9G REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP METHOD WITH 2UL:2UL REMARK 280 DROPS. RESERVOIR 12 % PEG 8000, 100 MM HEPES PH 6.5, 100 MM REMARK 280 CACL2, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 171.35050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 171.35050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 171.35050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 171.35050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 171.35050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 171.35050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 171.35050 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 171.35050 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 171.35050 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 171.35050 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 171.35050 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 171.35050 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 171.35050 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 171.35050 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 171.35050 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 171.35050 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 171.35050 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 171.35050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.937436 0.101088 -0.333160 -56.97303 REMARK 350 BIOMT2 2 -0.347438 0.333160 -0.876522 -149.38771 REMARK 350 BIOMT3 2 0.022390 0.937436 0.347438 -111.99302 REMARK 350 BIOMT1 3 0.836204 -0.183874 -0.516675 -88.17127 REMARK 350 BIOMT2 3 -0.461079 -0.745809 -0.480807 -81.19880 REMARK 350 BIOMT3 3 -0.296933 0.640281 -0.708429 -292.22064 REMARK 350 BIOMT1 4 0.836204 -0.461079 -0.296933 -50.47982 REMARK 350 BIOMT2 4 -0.183874 -0.745809 0.640281 110.33197 REMARK 350 BIOMT3 4 -0.516675 -0.480807 -0.708429 -291.61441 REMARK 350 BIOMT1 5 0.937436 -0.347438 0.022390 4.01302 REMARK 350 BIOMT2 5 0.101088 0.333160 0.937436 160.51559 REMARK 350 BIOMT3 5 -0.333160 -0.876522 0.347438 -111.01212 REMARK 350 BIOMT1 6 0.872200 0.410914 0.265362 44.92891 REMARK 350 BIOMT2 6 0.410914 -0.909812 0.058242 11.50150 REMARK 350 BIOMT3 6 0.265362 0.058242 -0.962388 -334.79609 REMARK 350 BIOMT1 7 0.680805 0.473829 -0.558561 -95.86715 REMARK 350 BIOMT2 7 0.702613 -0.206976 0.680805 117.48244 REMARK 350 BIOMT3 7 0.206976 -0.855948 -0.473829 -250.83444 REMARK 350 BIOMT1 8 0.461079 -0.296933 -0.836204 -142.88395 REMARK 350 BIOMT2 8 0.745809 0.640281 0.183874 32.12673 REMARK 350 BIOMT3 8 0.480807 -0.708429 0.516675 -81.69285 REMARK 350 BIOMT1 9 0.516675 -0.836204 -0.183874 -31.14586 REMARK 350 BIOMT2 9 0.480807 0.461079 -0.745809 -126.60694 REMARK 350 BIOMT3 9 0.708429 0.296933 0.640280 -61.11926 REMARK 350 BIOMT1 10 0.770762 -0.398731 0.496931 84.92887 REMARK 350 BIOMT2 10 0.273830 -0.496931 -0.823454 -139.35404 REMARK 350 BIOMT3 10 0.575277 0.770762 -0.273831 -217.54566 REMARK 350 BIOMT1 11 -0.876522 -0.347438 -0.333160 -57.89136 REMARK 350 BIOMT2 11 -0.347438 -0.022390 0.937436 160.45307 REMARK 350 BIOMT3 11 -0.333160 0.937436 -0.101088 -188.78541 REMARK 350 BIOMT1 12 -0.708429 -0.516675 0.480807 81.26134 REMARK 350 BIOMT2 12 -0.296933 0.836204 0.461079 78.60623 REMARK 350 BIOMT3 12 -0.640281 0.183875 -0.745809 -298.52451 REMARK 350 BIOMT1 13 -0.473829 0.206976 0.855948 144.96055 REMARK 350 BIOMT2 13 -0.558561 0.680805 -0.473829 -81.03286 REMARK 350 BIOMT3 13 -0.680805 -0.702613 -0.206977 -205.98899 REMARK 350 BIOMT1 14 -0.496931 0.823454 0.273831 45.17612 REMARK 350 BIOMT2 14 -0.770762 -0.273830 -0.575277 -97.84840 REMARK 350 BIOMT3 14 -0.398731 -0.496931 0.770761 -39.05979 REMARK 350 BIOMT1 15 -0.745809 0.480807 -0.461078 -80.19326 REMARK 350 BIOMT2 15 -0.640280 -0.708429 0.296933 51.39811 REMARK 350 BIOMT3 15 -0.183874 0.516675 0.836204 -28.42739 REMARK 350 BIOMT1 16 -0.995678 -0.063476 0.067799 10.27213 REMARK 350 BIOMT2 16 -0.063476 -0.067798 -0.995678 -169.26424 REMARK 350 BIOMT3 16 0.067799 -0.995678 0.063476 -159.12826 REMARK 350 BIOMT1 17 -0.909812 -0.058242 0.410915 68.88852 REMARK 350 BIOMT2 17 -0.058242 -0.962388 -0.265362 -44.01062 REMARK 350 BIOMT3 17 0.410915 -0.265362 0.872200 -21.35779 REMARK 350 BIOMT1 18 -0.823454 0.273831 0.496931 83.40435 REMARK 350 BIOMT2 18 0.273831 -0.575277 0.770761 132.79527 REMARK 350 BIOMT3 18 0.496931 0.770761 0.398731 -102.80728 REMARK 350 BIOMT1 19 -0.855948 0.473829 0.206976 33.75924 REMARK 350 BIOMT2 19 0.473829 0.558561 0.680805 116.81370 REMARK 350 BIOMT3 19 0.206976 0.680805 -0.702613 -290.91630 REMARK 350 BIOMT1 20 -0.962388 0.265362 -0.058242 -11.43896 REMARK 350 BIOMT2 20 0.265362 0.872200 -0.410914 -69.86934 REMARK 350 BIOMT3 20 -0.058242 -0.410914 -0.909812 -325.72458 REMARK 350 BIOMT1 21 0.296933 -0.836204 -0.461079 -78.60622 REMARK 350 BIOMT2 21 -0.640281 0.183874 -0.745809 -127.17447 REMARK 350 BIOMT3 21 0.708429 0.516675 -0.480807 -252.61138 REMARK 350 BIOMT1 22 0.558561 -0.680805 0.473829 81.03285 REMARK 350 BIOMT2 22 -0.680805 -0.702613 -0.206976 -34.63891 REMARK 350 BIOMT3 22 0.473829 -0.206976 -0.855948 -316.31059 REMARK 350 BIOMT1 23 0.770762 0.273830 0.575277 97.84838 REMARK 350 BIOMT2 23 -0.398731 -0.496931 0.770762 132.29026 REMARK 350 BIOMT3 23 0.496931 -0.823454 -0.273831 -216.52612 REMARK 350 BIOMT1 24 0.640281 0.708429 -0.296933 -51.39812 REMARK 350 BIOMT2 24 -0.183874 0.516675 0.836204 142.92260 REMARK 350 BIOMT3 24 0.745809 -0.480807 0.461079 -91.15672 REMARK 350 BIOMT1 25 0.347438 0.022390 -0.937436 -160.45306 REMARK 350 BIOMT2 25 -0.333160 0.937436 -0.101088 -17.43542 REMARK 350 BIOMT3 25 0.876522 0.347438 0.333160 -113.45864 REMARK 350 BIOMT1 26 -0.206976 0.855948 0.473829 79.48447 REMARK 350 BIOMT2 26 -0.680805 -0.473829 0.558561 95.86713 REMARK 350 BIOMT3 26 0.702613 -0.206977 0.680805 -53.86760 REMARK 350 BIOMT1 27 -0.480807 0.708429 -0.516675 -89.65714 REMARK 350 BIOMT2 27 -0.461079 0.296933 0.836204 142.88396 REMARK 350 BIOMT3 27 0.745809 0.640280 0.183874 -139.22325 REMARK 350 BIOMT1 28 -0.708429 -0.296933 -0.640281 -110.23079 REMARK 350 BIOMT2 28 -0.516675 0.836204 0.183875 31.14590 REMARK 350 BIOMT3 28 0.480807 0.461079 -0.745809 -297.95693 REMARK 350 BIOMT1 29 -0.575277 -0.770762 0.273831 46.19559 REMARK 350 BIOMT2 29 -0.770762 0.398731 -0.496931 -84.92885 REMARK 350 BIOMT3 29 0.273831 -0.496931 -0.823454 -310.70409 REMARK 350 BIOMT1 30 -0.265362 -0.058242 0.962388 163.44607 REMARK 350 BIOMT2 30 -0.872200 -0.410914 -0.265362 -44.92893 REMARK 350 BIOMT3 30 0.410914 -0.909812 0.058242 -159.84858 REMARK 350 BIOMT1 31 0.183874 -0.516675 -0.836204 -142.92260 REMARK 350 BIOMT2 31 0.745809 -0.480807 0.461078 80.19327 REMARK 350 BIOMT3 31 -0.640280 -0.708429 0.296933 -119.95186 REMARK 350 BIOMT1 32 0.333160 -0.937436 0.101088 17.43544 REMARK 350 BIOMT2 32 0.876522 0.347438 0.333160 57.89134 REMARK 350 BIOMT3 32 -0.347438 -0.022390 0.937436 -10.89695 REMARK 350 BIOMT1 33 0.640281 -0.183874 0.745809 127.17450 REMARK 350 BIOMT2 33 0.708429 0.516675 -0.480807 -81.26136 REMARK 350 BIOMT3 33 -0.296933 0.836204 0.461079 -92.74384 REMARK 350 BIOMT1 34 0.680805 0.702613 0.206976 34.63892 REMARK 350 BIOMT2 34 0.473829 -0.206976 -0.855948 -144.96054 REMARK 350 BIOMT3 34 -0.558561 0.680805 -0.473829 -252.38292 REMARK 350 BIOMT1 35 0.398730 0.496931 -0.770762 -132.29026 REMARK 350 BIOMT2 35 0.496931 -0.823454 -0.273831 -45.17608 REMARK 350 BIOMT3 35 -0.770762 -0.273831 -0.575277 -269.19839 REMARK 350 BIOMT1 36 -0.273831 0.496931 0.823454 139.35403 REMARK 350 BIOMT2 36 0.575277 0.770762 -0.273831 -46.19560 REMARK 350 BIOMT3 36 -0.770762 0.398731 -0.496931 -256.27892 REMARK 350 BIOMT1 37 -0.410914 0.909812 -0.058242 -11.50148 REMARK 350 BIOMT2 37 0.265362 0.058242 -0.962388 -163.44606 REMARK 350 BIOMT3 37 -0.872200 -0.410914 -0.265362 -216.27897 REMARK 350 BIOMT1 38 -0.702613 0.206976 -0.680805 -117.48241 REMARK 350 BIOMT2 38 0.206976 -0.855948 -0.473829 -79.48446 REMARK 350 BIOMT3 38 -0.680805 -0.473829 0.558561 -75.48287 REMARK 350 BIOMT1 39 -0.745809 -0.640280 -0.183874 -32.12672 REMARK 350 BIOMT2 39 0.480807 -0.708429 0.516675 89.65712 REMARK 350 BIOMT3 39 -0.461078 0.296933 0.836204 -28.46604 REMARK 350 BIOMT1 40 -0.480807 -0.461079 0.745809 126.60693 REMARK 350 BIOMT2 40 0.708429 0.296932 0.640280 110.23077 REMARK 350 BIOMT3 40 -0.516675 0.836204 0.183874 -140.20415 REMARK 350 BIOMT1 41 0.296933 -0.640281 0.708429 120.87061 REMARK 350 BIOMT2 41 -0.836204 0.183874 0.516675 88.17127 REMARK 350 BIOMT3 41 -0.461079 -0.745809 -0.480807 -252.54885 REMARK 350 BIOMT1 42 0.516675 0.480807 0.708429 120.26443 REMARK 350 BIOMT2 42 -0.836204 0.461079 0.296933 50.47979 REMARK 350 BIOMT3 42 -0.183874 -0.745809 0.640280 -61.01808 REMARK 350 BIOMT1 43 0.333160 0.876522 -0.347438 -60.33785 REMARK 350 BIOMT2 43 -0.937436 0.347438 -0.022390 -4.01304 REMARK 350 BIOMT3 43 0.101088 0.333160 0.937436 -10.83441 REMARK 350 BIOMT1 44 0.000000 0.000000 -1.000000 -171.35002 REMARK 350 BIOMT2 44 -1.000000 0.000000 0.000000 0.00003 REMARK 350 BIOMT3 44 0.000000 1.000000 0.000000 -171.34997 REMARK 350 BIOMT1 45 -0.022390 -0.937435 -0.347438 -59.35703 REMARK 350 BIOMT2 45 -0.937435 -0.101088 0.333161 56.97306 REMARK 350 BIOMT3 45 -0.347438 0.333161 -0.876522 -320.73771 REMARK 350 BIOMT1 46 0.183874 0.745809 -0.640280 -110.33195 REMARK 350 BIOMT2 46 -0.516675 -0.480807 -0.708429 -120.26442 REMARK 350 BIOMT3 46 -0.836204 0.461078 0.296933 -120.87022 REMARK 350 BIOMT1 47 -0.101088 -0.333160 -0.937436 -160.51560 REMARK 350 BIOMT2 47 -0.333160 -0.876522 0.347438 60.33788 REMARK 350 BIOMT3 47 -0.937436 0.347438 -0.022389 -175.36300 REMARK 350 BIOMT1 48 0.000000 -1.000000 0.000000 -0.00002 REMARK 350 BIOMT2 48 0.000000 0.000000 1.000000 171.35002 REMARK 350 BIOMT3 48 -1.000000 0.000000 0.000000 -171.34997 REMARK 350 BIOMT1 49 0.347438 -0.333160 0.876522 149.38771 REMARK 350 BIOMT2 49 0.022390 0.937436 0.347438 59.35701 REMARK 350 BIOMT3 49 -0.937436 -0.101088 0.333160 -114.37700 REMARK 350 BIOMT1 50 0.461079 0.745809 0.480807 81.19883 REMARK 350 BIOMT2 50 -0.296933 0.640281 -0.708429 -120.87063 REMARK 350 BIOMT3 50 -0.836204 0.183874 0.516675 -83.17880 REMARK 350 BIOMT1 51 -0.273831 0.575277 -0.770762 -132.79529 REMARK 350 BIOMT2 51 0.496931 0.770762 0.398731 68.54275 REMARK 350 BIOMT3 51 0.823454 -0.273831 -0.496931 -254.75433 REMARK 350 BIOMT1 52 -0.473829 -0.558561 -0.680805 -116.81369 REMARK 350 BIOMT2 52 0.206976 0.680805 -0.702613 -119.56628 REMARK 350 BIOMT3 52 0.855948 -0.473829 -0.206977 -205.10927 REMARK 350 BIOMT1 53 -0.265362 -0.872200 0.410914 69.86936 REMARK 350 BIOMT2 53 -0.058242 -0.410914 -0.909812 -154.37455 REMARK 350 BIOMT3 53 0.962388 -0.265362 0.058242 -159.91112 REMARK 350 BIOMT1 54 0.063476 0.067798 0.995678 169.26424 REMARK 350 BIOMT2 54 0.067798 -0.995678 0.063476 12.22179 REMARK 350 BIOMT3 54 0.995678 0.063476 -0.067799 -181.62218 REMARK 350 BIOMT1 55 0.058242 0.962388 0.265362 44.01059 REMARK 350 BIOMT2 55 0.410914 -0.265362 0.872200 149.99226 REMARK 350 BIOMT3 55 0.909812 0.058242 -0.410914 -240.23851 REMARK 350 BIOMT1 56 -0.206976 -0.680805 0.702613 119.56631 REMARK 350 BIOMT2 56 0.855948 -0.473829 -0.206977 -33.75927 REMARK 350 BIOMT3 56 0.473829 0.558561 0.680805 -54.53636 REMARK 350 BIOMT1 57 0.058242 0.410914 0.909812 154.37454 REMARK 350 BIOMT2 57 0.962388 -0.265362 0.058242 11.43895 REMARK 350 BIOMT3 57 0.265362 0.872200 -0.410914 -241.21940 REMARK 350 BIOMT1 58 -0.067798 0.995678 -0.063476 -12.22181 REMARK 350 BIOMT2 58 0.995678 0.063476 -0.067798 -10.27211 REMARK 350 BIOMT3 58 -0.063476 -0.067798 -0.995678 -340.61426 REMARK 350 BIOMT1 59 -0.410914 0.265362 -0.872200 -149.99225 REMARK 350 BIOMT2 59 0.909812 0.058242 -0.410914 -68.88849 REMARK 350 BIOMT3 59 -0.058242 -0.962388 -0.265362 -215.36061 REMARK 350 BIOMT1 60 -0.496931 -0.770762 -0.398731 -68.54272 REMARK 350 BIOMT2 60 0.823454 -0.273831 -0.496931 -83.40436 REMARK 350 BIOMT3 60 0.273831 -0.575277 0.770761 -38.55475 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 ARG A 3 REMARK 465 ARG A 4 REMARK 465 ALA A 5 REMARK 465 VAL A 6 REMARK 465 LEU A 7 REMARK 465 GLY A 8 REMARK 465 GLY A 9 REMARK 465 ALA A 10 REMARK 465 VAL A 11 REMARK 465 VAL A 12 REMARK 465 TYR A 13 REMARK 465 PRO A 14 REMARK 465 GLU A 15 REMARK 465 GLY A 16 REMARK 465 PRO A 17 REMARK 465 PRO A 18 REMARK 465 PRO A 19 REMARK 465 SER A 20 REMARK 465 TYR A 21 REMARK 465 GLU A 22 REMARK 465 SER A 23 REMARK 465 VAL A 24 REMARK 465 MET A 25 REMARK 465 GLN A 26 REMARK 465 GLN A 27 REMARK 465 GLN A 28 REMARK 465 ALA A 29 REMARK 465 ALA A 30 REMARK 465 MET A 31 REMARK 465 ILE A 32 REMARK 465 GLN A 33 REMARK 465 PRO A 34 REMARK 465 PRO A 35 REMARK 465 LEU A 36 REMARK 465 GLU A 37 REMARK 465 ALA A 38 REMARK 465 PRO A 39 REMARK 465 PHE A 40 REMARK 465 VAL A 41 REMARK 465 PRO A 42 REMARK 465 PRO A 43 REMARK 465 ARG A 44 REMARK 465 TYR A 45 REMARK 465 LEU A 46 REMARK 465 ALA A 47 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 309 N LYS A 348 1.97 REMARK 500 O ASP A 161 N HIS A 165 2.07 REMARK 500 O ASP A 518 N ARG A 521 2.09 REMARK 500 OD1 ASN A 83 O ASN A 86 2.10 REMARK 500 O GLU A 369 N LYS A 371 2.15 REMARK 500 O PRO A 293 O ILE A 372 2.16 REMARK 500 O HIS A 274 N PHE A 276 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 115 CB GLU A 115 CG -0.120 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 83 N - CA - C ANGL. DEV. = 17.2 DEGREES REMARK 500 TYR A 84 CB - CA - C ANGL. DEV. = -12.1 DEGREES REMARK 500 TYR A 84 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 TYR A 84 N - CA - C ANGL. DEV. = -24.1 DEGREES REMARK 500 PHE A 91 N - CA - C ANGL. DEV. = -16.9 DEGREES REMARK 500 GLU A 115 N - CA - C ANGL. DEV. = 20.2 DEGREES REMARK 500 SER A 140 N - CA - C ANGL. DEV. = -18.6 DEGREES REMARK 500 GLU A 155 N - CA - C ANGL. DEV. = 17.2 DEGREES REMARK 500 VAL A 157 N - CA - C ANGL. DEV. = 23.0 DEGREES REMARK 500 THR A 158 N - CA - C ANGL. DEV. = 19.8 DEGREES REMARK 500 PRO A 253 C - N - CA ANGL. DEV. = -10.6 DEGREES REMARK 500 GLY A 279 N - CA - C ANGL. DEV. = -17.7 DEGREES REMARK 500 GLY A 386 N - CA - C ANGL. DEV. = 21.4 DEGREES REMARK 500 ASN A 387 N - CA - C ANGL. DEV. = 19.0 DEGREES REMARK 500 PRO A 388 C - N - CD ANGL. DEV. = -13.2 DEGREES REMARK 500 LEU A 414 N - CA - C ANGL. DEV. = -18.0 DEGREES REMARK 500 PRO A 415 C - N - CA ANGL. DEV. = -19.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 49 102.80 97.86 REMARK 500 TYR A 57 139.30 157.46 REMARK 500 SER A 58 -111.30 18.55 REMARK 500 GLU A 59 72.16 6.70 REMARK 500 LEU A 60 125.92 -35.04 REMARK 500 SER A 61 119.75 -30.59 REMARK 500 PRO A 62 100.69 -44.65 REMARK 500 ASP A 65 -7.81 91.99 REMARK 500 THR A 66 134.41 128.18 REMARK 500 ASP A 73 -11.88 -147.14 REMARK 500 ILE A 79 -85.88 -35.86 REMARK 500 ALA A 80 -71.02 -18.29 REMARK 500 GLN A 85 -94.17 -18.14 REMARK 500 ASN A 86 -159.77 -134.40 REMARK 500 ASP A 87 -125.05 -71.90 REMARK 500 PHE A 91 -150.46 -174.97 REMARK 500 THR A 104 -73.78 -38.56 REMARK 500 SER A 107 -61.55 -19.72 REMARK 500 GLN A 109 164.20 -45.18 REMARK 500 ASP A 114 -166.28 -102.27 REMARK 500 GLU A 115 -146.73 -125.46 REMARK 500 SER A 117 110.38 150.97 REMARK 500 TRP A 119 -165.81 -168.47 REMARK 500 THR A 125 143.44 -170.25 REMARK 500 ASN A 133 -37.24 -27.53 REMARK 500 ASN A 141 -47.73 -140.71 REMARK 500 PHE A 143 156.71 154.16 REMARK 500 ALA A 145 156.24 173.98 REMARK 500 LYS A 152 -133.81 -167.14 REMARK 500 ALA A 153 141.83 179.35 REMARK 500 PRO A 154 85.03 -55.53 REMARK 500 VAL A 159 -68.77 79.31 REMARK 500 GLU A 181 146.32 -38.00 REMARK 500 ALA A 186 -82.68 -30.88 REMARK 500 THR A 187 -73.75 -46.17 REMARK 500 MET A 188 -60.86 -7.97 REMARK 500 ILE A 190 -88.61 -30.32 REMARK 500 ASP A 191 -48.56 -28.71 REMARK 500 ASN A 194 10.57 -57.29 REMARK 500 ASN A 195 -72.33 -118.98 REMARK 500 ALA A 196 -15.54 -49.76 REMARK 500 ASP A 199 9.92 -53.71 REMARK 500 TYR A 201 -75.78 -38.93 REMARK 500 LEU A 202 -69.06 -20.26 REMARK 500 GLN A 207 1.39 -56.49 REMARK 500 ASN A 208 49.64 -145.62 REMARK 500 ASP A 220 154.81 171.33 REMARK 500 ARG A 222 146.32 145.71 REMARK 500 ASN A 223 59.05 -102.27 REMARK 500 ARG A 225 -18.44 110.07 REMARK 500 REMARK 500 THIS ENTRY HAS 123 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 528 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4AR2 RELATED DB: PDB REMARK 900 DODECAHEDRON FORMED OF PENTON BASE PROTEIN FROM ADENOVIRUS AD3 DBREF 4AQQ A 1 542 UNP Q2Y0H9 Q2Y0H9_ADE03 1 542 SEQRES 1 A 509 MET ARG ARG ARG ALA VAL LEU GLY GLY ALA VAL VAL TYR SEQRES 2 A 509 PRO GLU GLY PRO PRO PRO SER TYR GLU SER VAL MET GLN SEQRES 3 A 509 GLN GLN ALA ALA MET ILE GLN PRO PRO LEU GLU ALA PRO SEQRES 4 A 509 PHE VAL PRO PRO ARG TYR LEU ALA PRO THR GLU GLY ARG SEQRES 5 A 509 ASN SER ILE ARG TYR SER GLU LEU SER PRO LEU TYR ASP SEQRES 6 A 509 THR THR LYS LEU TYR LEU VAL ASP ASN LYS SER ALA ASP SEQRES 7 A 509 ILE ALA SER LEU ASN TYR GLN ASN ASP HIS SER ASN PHE SEQRES 8 A 509 LEU THR THR VAL VAL GLN ASN ASN ASP PHE THR PRO THR SEQRES 9 A 509 GLU ALA SER THR GLN THR ILE ASN PHE ASP GLU ARG SER SEQRES 10 A 509 ARG TRP GLY GLY GLN LEU LYS THR ILE MET HIS THR ASN SEQRES 11 A 509 MET PRO ASN VAL ASN GLU TYR MET PHE SER ASN LYS PHE SEQRES 12 A 509 LYS ALA ARG VAL MET VAL SER ARG LYS ALA PRO GLU GLY SEQRES 13 A 509 VAL THR VAL ASN ASP THR TYR ASP HIS LYS GLU ASP ILE SEQRES 14 A 509 LEU LYS TYR GLU TRP PHE GLU PHE ILE LEU PRO GLU GLY SEQRES 15 A 509 ASN PHE SER ALA THR MET THR ILE ASP LEU MET ASN ASN SEQRES 16 A 509 ALA ILE ILE ASP ASN TYR LEU GLU ILE GLY ARG GLN ASN SEQRES 17 A 509 GLY VAL LEU GLU SER ASP ILE GLY VAL LYS PHE ASP THR SEQRES 18 A 509 ARG ASN PHE ARG LEU GLY TRP ASP PRO GLU THR LYS LEU SEQRES 19 A 509 ILE MET PRO GLY VAL TYR THR TYR GLU ALA PHE HIS PRO SEQRES 20 A 509 ASP ILE VAL LEU LEU PRO GLY CYS GLY VAL ASP PHE THR SEQRES 21 A 509 GLU SER ARG LEU SER ASN LEU LEU GLY ILE ARG LYS ARG SEQRES 22 A 509 HIS PRO PHE GLN GLU GLY PHE LYS ILE MET TYR GLU ASP SEQRES 23 A 509 LEU GLU GLY GLY ASN ILE PRO ALA LEU LEU ASP VAL THR SEQRES 24 A 509 ALA TYR GLU GLU SER LYS LYS ASP THR THR THR GLU THR SEQRES 25 A 509 THR THR LYS LYS GLU LEU LYS ILE GLN PRO LEU GLU LYS SEQRES 26 A 509 ASP SER LYS SER ARG SER TYR ASN VAL LEU GLU ASP LYS SEQRES 27 A 509 ILE ASN THR ALA TYR ARG SER TRP TYR LEU SER TYR ASN SEQRES 28 A 509 TYR GLY ASN PRO GLU LYS GLY ILE ARG SER TRP THR LEU SEQRES 29 A 509 LEU THR THR SER ASP VAL THR CYS GLY ALA GLU GLN VAL SEQRES 30 A 509 TYR TRP SER LEU PRO ASP MET MET GLN ASP PRO VAL THR SEQRES 31 A 509 PHE ARG SER THR ARG GLN VAL ASN ASN TYR PRO VAL VAL SEQRES 32 A 509 GLY ALA GLU LEU MET PRO VAL PHE SER LYS SER PHE TYR SEQRES 33 A 509 ASN GLU GLN ALA VAL TYR SER GLN GLN LEU ARG GLN ALA SEQRES 34 A 509 THR SER LEU THR HIS VAL PHE ASN ARG PHE PRO GLU ASN SEQRES 35 A 509 GLN ILE LEU ILE ARG PRO PRO ALA PRO THR ILE THR THR SEQRES 36 A 509 VAL SER GLU ASN VAL PRO ALA LEU THR ASP HIS GLY THR SEQRES 37 A 509 LEU PRO LEU ARG SER SER ILE ARG GLY VAL GLN ARG VAL SEQRES 38 A 509 THR VAL THR ASP ALA ARG ARG ARG THR CYS PRO TYR VAL SEQRES 39 A 509 TYR LYS ALA LEU GLY ILE VAL ALA PRO ARG VAL LEU SER SEQRES 40 A 509 SER ARG HET CA A1001 1 HETNAM CA CALCIUM ION FORMUL 2 CA CA 2+ HELIX 1 1 LYS A 75 ASN A 83 1 9 HELIX 2 2 THR A 102 GLN A 109 1 8 HELIX 3 3 HIS A 165 ASP A 168 5 4 HELIX 4 4 SER A 185 ILE A 197 1 13 HELIX 5 5 ILE A 197 ARG A 206 1 10 HELIX 6 6 GLN A 207 GLY A 209 5 3 HELIX 7 7 LEU A 211 ILE A 215 5 5 HELIX 8 8 ARG A 263 LEU A 268 1 6 HELIX 9 9 GLU A 285 LEU A 287 5 3 HELIX 10 10 ASP A 297 SER A 304 1 8 HELIX 11 11 TRP A 379 GLY A 386 1 8 HELIX 12 12 GLU A 451 SER A 456 1 6 HELIX 13 13 GLN A 457 LEU A 459 5 3 HELIX 14 14 ASN A 475 ILE A 479 5 5 SHEET 1 AA 4 TYR A 70 LEU A 71 0 SHEET 2 AA 4 VAL A 527 VAL A 538 -1 O GLY A 532 N LEU A 71 SHEET 3 AA 4 TRP A 119 THR A 129 -1 O GLY A 120 N ARG A 537 SHEET 4 AA 4 ALA A 495 PRO A 503 -1 O ALA A 495 N MET A 127 SHEET 1 AB 2 THR A 93 THR A 94 0 SHEET 2 AB 2 VAL A 511 GLN A 512 -1 O GLN A 512 N THR A 93 SHEET 1 AC 2 THR A 110 ILE A 111 0 SHEET 2 AC 2 ILE A 508 ARG A 509 -1 O ILE A 508 N ILE A 111 SHEET 1 AD 4 ILE A 169 GLU A 176 0 SHEET 2 AD 4 LYS A 144 LYS A 152 -1 O ALA A 145 N PHE A 175 SHEET 3 AD 4 GLY A 256 ASP A 258 -1 O GLY A 256 N ARG A 146 SHEET 4 AD 4 LYS A 281 MET A 283 -1 O ILE A 282 N VAL A 257 SHEET 1 AE 3 VAL A 217 THR A 221 0 SHEET 2 AE 3 PRO A 247 LEU A 251 -1 O ASP A 248 N ASP A 220 SHEET 3 AE 3 ARG A 377 SER A 378 -1 O ARG A 377 N LEU A 251 SHEET 1 AF 2 ILE A 270 LYS A 272 0 SHEET 2 AF 2 THR A 396 LEU A 398 -1 O LEU A 397 N ARG A 271 SHEET 1 AG 3 GLY A 437 LEU A 440 0 SHEET 2 AG 3 GLN A 409 SER A 413 -1 O VAL A 410 N GLU A 439 SHEET 3 AG 3 THR A 515 ASP A 518 -1 O THR A 515 N SER A 413 SHEET 1 AH 2 VAL A 443 TYR A 449 0 SHEET 2 AH 2 ILE A 486 ASN A 492 -1 O THR A 487 N PHE A 448 LINK OE1 GLU A 451 CA CA A1001 1555 1555 2.96 SITE 1 AC1 1 GLU A 451 CRYST1 342.701 342.701 342.701 90.00 90.00 90.00 P 21 3 720 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.002918 0.000000 0.000000 0.00000 SCALE2 0.000000 0.002918 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002918 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.941000 -0.337990 0.016550 2.70386 MTRIX2 2 0.102060 0.330090 0.938420 160.69077 MTRIX3 2 -0.322640 -0.881370 0.345110 -112.14434 MTRIX1 3 0.844830 -0.444950 -0.297120 -51.05784 MTRIX2 3 -0.172690 -0.752380 0.635700 108.80674 MTRIX3 3 -0.506400 -0.485750 -0.712470 -293.12048 MTRIX1 4 0.844100 -0.168090 -0.509160 -87.28722 MTRIX2 4 -0.444040 -0.751400 -0.488080 -83.52425 MTRIX3 4 -0.300540 0.638080 -0.708890 -292.14120 MTRIX1 5 0.941020 0.104440 -0.321820 -55.18031 MTRIX2 5 -0.338040 0.330390 -0.881230 -150.78491 MTRIX3 5 0.014290 0.938050 0.346210 -111.69801 MTRIX1 6 0.674340 0.487080 -0.555000 -95.18713 MTRIX2 6 0.703830 -0.196630 0.682610 117.36673 MTRIX3 6 0.223350 -0.850940 -0.475420 -252.58156 MTRIX1 7 0.865200 0.417820 0.277230 47.10107 MTRIX2 7 0.418010 -0.906360 0.061440 11.41701 MTRIX3 7 0.276950 0.062730 -0.958840 -335.12631 MTRIX1 8 0.769060 -0.396220 0.501550 85.37015 MTRIX2 8 0.283030 -0.492460 -0.823030 -140.14326 MTRIX3 8 0.573100 0.774910 -0.266590 -216.21837 MTRIX1 9 0.520110 -0.833140 -0.188030 -32.51867 MTRIX2 9 0.480720 0.467530 -0.741840 -126.19143 MTRIX3 9 0.705970 0.295450 0.643680 -60.52098 MTRIX1 10 0.461070 -0.291760 -0.838030 -143.57373 MTRIX2 10 0.741580 0.645330 0.183330 31.91926 MTRIX3 10 0.487320 -0.705990 0.513900 -82.89653 MTRIX1 11 0.636550 0.711510 -0.297590 -51.36223 MTRIX2 11 -0.191960 0.519880 0.832390 143.02258 MTRIX3 11 0.746960 -0.472730 0.467510 -90.43436 MTRIX1 12 0.770470 0.282860 0.571280 97.08134 MTRIX2 12 -0.391850 -0.496710 0.774420 132.61191 MTRIX3 12 0.502820 -0.820530 -0.271860 -216.81081 MTRIX1 13 0.563060 -0.674620 0.477340 81.32407 MTRIX2 13 -0.672030 -0.709940 -0.210640 -35.70772 MTRIX3 13 0.480980 -0.202180 -0.853100 -316.56448 MTRIX1 14 0.307250 -0.831990 -0.461940 -79.54729 MTRIX2 14 -0.637890 0.180150 -0.748760 -127.68522 MTRIX3 14 0.706180 0.524720 -0.475370 -251.89003 MTRIX1 15 0.353920 0.033980 -0.934660 -160.55394 MTRIX2 15 -0.345020 0.933600 -0.096700 -15.58765 MTRIX3 15 0.869310 0.356700 0.342150 -111.76771 MTRIX1 16 0.045800 0.963800 0.262680 44.24019 MTRIX2 16 0.408950 -0.258000 0.875330 150.43338 MTRIX3 16 0.911410 0.067330 -0.405960 -239.48529 MTRIX1 17 -0.277970 0.567350 -0.775150 -133.35480 MTRIX2 17 0.486380 0.778990 0.395750 68.49478 MTRIX3 17 0.828360 -0.267010 -0.492470 -254.32678 MTRIX1 18 -0.471880 -0.570150 -0.672500 -115.38923 MTRIX2 18 0.200740 0.673250 -0.711640 -121.05467 MTRIX3 18 0.858510 -0.470810 -0.203240 -204.65771 MTRIX1 19 -0.255740 -0.882700 0.394250 66.28629 MTRIX2 19 -0.040890 -0.397580 -0.916660 -157.21521 MTRIX3 19 0.965880 -0.250550 0.065590 -159.07819 MTRIX1 20 0.050450 0.056680 0.997120 170.47577 MTRIX2 20 0.078540 -0.995520 0.052610 9.34358 MTRIX3 20 0.995630 0.075660 -0.054670 -179.38301 MTRIX1 21 0.000000 0.000000 -1.000000 -171.35000 MTRIX2 21 -1.000000 0.000000 0.000000 0.00000 MTRIX3 21 0.000000 1.000000 0.000000 -171.35000 MTRIX1 22 0.322640 0.881370 -0.345110 -59.20566 MTRIX2 22 -0.941000 0.337990 -0.016550 -2.70386 MTRIX3 22 0.102060 0.330090 0.938420 -10.65923 MTRIX1 23 0.506400 0.485750 0.712470 121.77048 MTRIX2 23 -0.844830 0.444950 0.297120 51.05784 MTRIX3 23 -0.172690 -0.752380 0.635700 -62.54326 MTRIX1 24 0.300540 -0.638080 0.708890 120.79120 MTRIX2 24 -0.844100 0.168090 0.509160 87.28722 MTRIX3 24 -0.444040 -0.751400 -0.488080 -254.87425 MTRIX1 25 -0.014290 -0.938050 -0.346210 -59.65199 MTRIX2 25 -0.941020 -0.104440 0.321820 55.18031 MTRIX3 25 -0.338040 0.330390 -0.881230 -322.13491 MTRIX1 26 -0.223350 0.850940 0.475420 81.23156 MTRIX2 26 -0.674340 -0.487080 0.555000 95.18713 MTRIX3 26 0.703830 -0.196630 0.682610 -53.98327 MTRIX1 27 -0.276950 -0.062730 0.958840 163.77631 MTRIX2 27 -0.865200 -0.417820 -0.277230 -47.10107 MTRIX3 27 0.418010 -0.906360 0.061440 -159.93299 MTRIX1 28 -0.573100 -0.774910 0.266590 44.86837 MTRIX2 28 -0.769060 0.396220 -0.501550 -85.37015 MTRIX3 28 0.283030 -0.492460 -0.823030 -311.49326 MTRIX1 29 -0.705970 -0.295450 -0.643680 -110.82902 MTRIX2 29 -0.520110 0.833140 0.188030 32.51867 MTRIX3 29 0.480720 0.467530 -0.741840 -297.54143 MTRIX1 30 -0.487320 0.705990 -0.513900 -88.45347 MTRIX2 30 -0.461070 0.291760 0.838030 143.57373 MTRIX3 30 0.741580 0.645330 0.183330 -139.43074 MTRIX1 31 -0.746960 0.472730 -0.467510 -80.91564 MTRIX2 31 -0.636550 -0.711510 0.297590 51.36223 MTRIX3 31 -0.191960 0.519880 0.832390 -28.32742 MTRIX1 32 -0.502820 0.820530 0.271860 45.46081 MTRIX2 32 -0.770470 -0.282860 -0.571280 -97.08134 MTRIX3 32 -0.391850 -0.496710 0.774420 -38.73809 MTRIX1 33 -0.480980 0.202180 0.853100 145.21448 MTRIX2 33 -0.563060 0.674620 -0.477340 -81.32407 MTRIX3 33 -0.672030 -0.709940 -0.210640 -207.05772 MTRIX1 34 -0.706180 -0.524720 0.475370 80.54003 MTRIX2 34 -0.307250 0.831990 0.461940 79.54729 MTRIX3 34 -0.637890 0.180150 -0.748760 -299.03522 MTRIX1 35 -0.869310 -0.356700 -0.342150 -59.58229 MTRIX2 35 -0.353920 -0.033980 0.934660 160.55394 MTRIX3 35 -0.345020 0.933600 -0.096700 -186.93765 MTRIX1 36 -0.911410 -0.067330 0.405960 68.13529 MTRIX2 36 -0.045800 -0.963800 -0.262680 -44.24019 MTRIX3 36 0.408950 -0.258000 0.875330 -20.91662 MTRIX1 37 -0.828360 0.267010 0.492470 82.97678 MTRIX2 37 0.277970 -0.567350 0.775150 133.35480 MTRIX3 37 0.486380 0.778990 0.395750 -102.85522 MTRIX1 38 -0.858510 0.470810 0.203240 33.30771 MTRIX2 38 0.471880 0.570150 0.672500 115.38923 MTRIX3 38 0.200740 0.673250 -0.711640 -292.40467 MTRIX1 39 -0.965880 0.250550 -0.065590 -12.27181 MTRIX2 39 0.255740 0.882700 -0.394250 -66.28629 MTRIX3 39 -0.040890 -0.397580 -0.916660 -328.56521 MTRIX1 40 -0.995630 -0.075660 0.054670 8.03301 MTRIX2 40 -0.050450 -0.056680 -0.997120 -170.47577 MTRIX3 40 0.078540 -0.995520 0.052610 -162.00642 MTRIX1 41 0.000000 -1.000000 0.000000 0.00000 MTRIX2 41 0.000000 0.000000 1.000000 171.35000 MTRIX3 41 -1.000000 0.000000 0.000000 -171.35000 MTRIX1 42 -0.102060 -0.330090 -0.938420 -160.69077 MTRIX2 42 -0.322640 -0.881370 0.345110 59.20566 MTRIX3 42 -0.941000 0.337990 -0.016550 -174.05386 MTRIX1 43 0.172690 0.752380 -0.635700 -108.80674 MTRIX2 43 -0.506400 -0.485750 -0.712470 -121.77048 MTRIX3 43 -0.844830 0.444950 0.297120 -120.29216 MTRIX1 44 0.444040 0.751400 0.488080 83.52425 MTRIX2 44 -0.300540 0.638080 -0.708890 -120.79120 MTRIX3 44 -0.844100 0.168090 0.509160 -84.06278 MTRIX1 45 0.338040 -0.330390 0.881230 150.78491 MTRIX2 45 0.014290 0.938050 0.346210 59.65199 MTRIX3 45 -0.941020 -0.104440 0.321820 -116.16969 MTRIX1 46 -0.703830 0.196630 -0.682610 -117.36673 MTRIX2 46 0.223350 -0.850940 -0.475420 -81.23156 MTRIX3 46 -0.674340 -0.487080 0.555000 -76.16287 MTRIX1 47 -0.418010 0.906360 -0.061440 -11.41701 MTRIX2 47 0.276950 0.062730 -0.958840 -163.77631 MTRIX3 47 -0.865200 -0.417820 -0.277230 -218.45107 MTRIX1 48 -0.283030 0.492460 0.823030 140.14326 MTRIX2 48 0.573100 0.774910 -0.266590 -44.86837 MTRIX3 48 -0.769060 0.396220 -0.501550 -256.72015 MTRIX1 49 -0.480720 -0.467530 0.741840 126.19143 MTRIX2 49 0.705970 0.295450 0.643680 110.82902 MTRIX3 49 -0.520110 0.833140 0.188030 -138.83133 MTRIX1 50 -0.741580 -0.645330 -0.183330 -31.91926 MTRIX2 50 0.487320 -0.705990 0.513900 88.45347 MTRIX3 50 -0.461070 0.291760 0.838030 -27.77627 MTRIX1 51 0.191960 -0.519880 -0.832390 -143.02258 MTRIX2 51 0.746960 -0.472730 0.467510 80.91564 MTRIX3 51 -0.636550 -0.711510 0.297590 -119.98777 MTRIX1 52 0.391850 0.496710 -0.774420 -132.61191 MTRIX2 52 0.502820 -0.820530 -0.271860 -45.46081 MTRIX3 52 -0.770470 -0.282860 -0.571280 -268.43134 MTRIX1 53 0.672030 0.709940 0.210640 35.70772 MTRIX2 53 0.480980 -0.202180 -0.853100 -145.21448 MTRIX3 53 -0.563060 0.674620 -0.477340 -252.67407 MTRIX1 54 0.637890 -0.180150 0.748760 127.68522 MTRIX2 54 0.706180 0.524720 -0.475370 -80.54003 MTRIX3 54 -0.307250 0.831990 0.461940 -91.80271 MTRIX1 55 0.345020 -0.933600 0.096700 15.58765 MTRIX2 55 0.869310 0.356700 0.342150 59.58229 MTRIX3 55 -0.353920 -0.033980 0.934660 -10.79606 MTRIX1 56 -0.408950 0.258000 -0.875330 -150.43338 MTRIX2 56 0.911410 0.067330 -0.405960 -68.13529 MTRIX3 56 -0.045800 -0.963800 -0.262680 -215.59019 MTRIX1 57 -0.486380 -0.778990 -0.395750 -68.49478 MTRIX2 57 0.828360 -0.267010 -0.492470 -82.97678 MTRIX3 57 0.277970 -0.567350 0.775150 -37.99520 MTRIX1 58 -0.200740 -0.673250 0.711640 121.05467 MTRIX2 58 0.858510 -0.470810 -0.203240 -33.30771 MTRIX3 58 0.471880 0.570150 0.672500 -55.96077 MTRIX1 59 0.040890 0.397580 0.916660 157.21521 MTRIX2 59 0.965880 -0.250550 0.065590 12.27181 MTRIX3 59 0.255740 0.882700 -0.394250 -237.63629 MTRIX1 60 -0.078540 0.995520 -0.052610 -9.34358 MTRIX2 60 0.995630 0.075660 -0.054670 -8.03301 MTRIX3 60 -0.050450 -0.056680 -0.997120 -341.82577