HEADER CELL ADHESION 19-APR-12 4AQT TITLE LAMININ GAMMA1 LN-LE1-2 STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LAMININ SUBUNIT GAMMA-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LN-LE1-2 FRAGMENT, RESIDUES 33-395; COMPND 5 SYNONYM: LAMININ B2 CHAIN, LAMININ-1 SUBUNIT GAMMA, LAMININ-10 COMPND 6 SUBUNIT GAMMA, LAMININ-11 SUBUNIT GAMMA, LAMININ-2 SUBUNIT GAMMA, COMPND 7 LAMININ-3 SUBUNIT GAMMA, LAMININ-4 SUBUNIT GAMMA, LAMININ-6 SUBUNIT COMPND 8 GAMMA, LAMININ-7 SUBUNIT GAMMA, LAMININ-8 SUBUNIT GAMMA, LAMININ-9 COMPND 9 SUBUNIT GAMMA, S-LAMININ SUBUNIT GAMMA, S-LAM GAMMA; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293 C18; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCEP-PU KEYWDS CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR F.CARAFOLI,S.HUSSAIN,E.HOHENESTER REVDAT 3 20-DEC-23 4AQT 1 HETSYN REVDAT 2 29-JUL-20 4AQT 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 15-AUG-12 4AQT 0 JRNL AUTH F.CARAFOLI,S.HUSSAIN,E.HOHENESTER JRNL TITL CRYSTAL STRUCTURES OF THE NETWORK-FORMING SHORT-ARM TIPS OF JRNL TITL 2 THE LAMININ BETA1 AND GAMMA1 CHAINS. JRNL REF PLOS ONE V. 7 42473 2012 JRNL REFN ESSN 1932-6203 JRNL PMID 22860131 JRNL DOI 10.1371/JOURNAL.PONE.0042473 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 83.4 REMARK 3 NUMBER OF REFLECTIONS : 10269 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.600 REMARK 3 FREE R VALUE TEST SET COUNT : 1059 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2688 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 83.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.81400 REMARK 3 B22 (A**2) : -2.81400 REMARK 3 B33 (A**2) : 5.62800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED INDIVIDUAL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.250 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.650 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.290 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.650 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT REMARK 3 KSOL : 0.28 REMARK 3 BSOL : 18.14 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BECAUSE OF THE ANISOTROPIC DIFFRACTION REMARK 3 LIMIT, THE DATA WERE TRUNCATED AT 3.8 A ALONG THE C-AXIS AND AT REMARK 3 3.2 A ALONG THE A- AND B-AXES USING THE DIFFRACTION ANISOTROPY REMARK 3 SERVER REMARK 4 REMARK 4 4AQT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-APR-12. REMARK 100 THE DEPOSITION ID IS D_1290052138. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12556 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.170 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.20 REMARK 200 R MERGE FOR SHELL (I) : 0.67000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2Y38 REMARK 200 REMARK 200 REMARK: THE DIFFRACTION LIMIT OF THE CRYSTAL WAS ANISOTROPIC AND REMARK 200 LIMITED TO 3.8 A ALONG THE C AXIS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 101.50500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.60394 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 31.23000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 101.50500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 58.60394 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 31.23000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 101.50500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 58.60394 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 31.23000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 101.50500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 58.60394 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 31.23000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 101.50500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 58.60394 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 31.23000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 101.50500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 58.60394 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 31.23000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 117.20788 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 62.46000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 117.20788 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 62.46000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 117.20788 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 62.46000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 117.20788 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 62.46000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 117.20788 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 62.46000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 117.20788 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 62.46000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 101.50500 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 -58.60394 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 62.46000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 30 REMARK 465 PRO A 31 REMARK 465 LEU A 32 REMARK 465 ALA A 33 REMARK 465 ALA A 34 REMARK 465 MET A 35 REMARK 465 ASP A 36 REMARK 465 GLY A 79 REMARK 465 VAL A 80 REMARK 465 THR A 81 REMARK 465 GLY A 82 REMARK 465 ALA A 398 REMARK 465 HIS A 399 REMARK 465 HIS A 400 REMARK 465 HIS A 401 REMARK 465 HIS A 402 REMARK 465 HIS A 403 REMARK 465 HIS A 404 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 37 CG CD OE1 OE2 REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 ARG A 44 CG CD NE CZ NH1 NH2 REMARK 470 THR A 78 OG1 CG2 REMARK 470 VAL A 83 CG1 CG2 REMARK 470 THR A 84 OG1 CG2 REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 SER A 86 OG REMARK 470 GLN A 98 CG CD OE1 NE2 REMARK 470 LYS A 149 CG CD CE NZ REMARK 470 ARG A 189 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 224 CG CD OE1 OE2 REMARK 470 LYS A 266 CG CD CE NZ REMARK 470 LYS A 269 CG CD CE NZ REMARK 470 GLU A 292 CG CD OE1 OE2 REMARK 470 LYS A 295 CG CD CE NZ REMARK 470 GLU A 297 CG CD OE1 OE2 REMARK 470 ASP A 299 CG OD1 OD2 REMARK 470 LYS A 300 CG CD CE NZ REMARK 470 GLU A 332 CG CD OE1 OE2 REMARK 470 GLN A 347 CG CD OE1 NE2 REMARK 470 ARG A 357 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 369 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 371 CG OD1 ND2 REMARK 470 ARG A 381 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 382 CG CD OE1 OE2 REMARK 470 ASN A 383 CG OD1 ND2 REMARK 470 ARG A 386 CG CD NE CZ NH1 NH2 REMARK 470 ALA A 397 CA C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 262 N GLU A 264 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 38 32.50 -92.41 REMARK 500 MET A 49 151.72 174.80 REMARK 500 ALA A 55 -8.09 -54.74 REMARK 500 PHE A 57 126.65 -36.34 REMARK 500 ASN A 58 -35.00 82.80 REMARK 500 THR A 66 108.98 -160.45 REMARK 500 VAL A 76 151.25 -47.55 REMARK 500 LYS A 85 94.23 -170.48 REMARK 500 HIS A 99 50.20 -141.03 REMARK 500 VAL A 125 -82.15 -125.55 REMARK 500 GLN A 126 -107.11 22.98 REMARK 500 THR A 152 -156.93 -128.26 REMARK 500 ASP A 167 -83.01 -76.79 REMARK 500 SER A 185 59.00 35.56 REMARK 500 ARG A 189 68.19 -156.43 REMARK 500 GLU A 206 -26.82 -37.06 REMARK 500 ILE A 210 -33.14 83.63 REMARK 500 SER A 211 -72.66 -14.43 REMARK 500 PRO A 227 -10.11 -46.75 REMARK 500 ALA A 229 -25.87 -36.57 REMARK 500 ASP A 233 1.21 -63.65 REMARK 500 ASN A 234 34.23 -147.98 REMARK 500 ALA A 244 126.44 -172.11 REMARK 500 ASN A 263 37.74 -32.82 REMARK 500 LYS A 269 11.85 -65.59 REMARK 500 ASP A 277 126.53 -174.52 REMARK 500 GLU A 292 131.57 -172.64 REMARK 500 ASN A 296 -159.01 -99.04 REMARK 500 LYS A 306 -157.85 -86.99 REMARK 500 HIS A 307 19.91 51.02 REMARK 500 PHE A 320 -27.31 81.88 REMARK 500 PHE A 321 67.10 -103.01 REMARK 500 GLU A 332 -79.29 -45.57 REMARK 500 SER A 335 134.86 -25.39 REMARK 500 ASP A 341 -82.86 -93.83 REMARK 500 CYS A 342 -23.94 72.31 REMARK 500 ASN A 367 82.43 50.29 REMARK 500 ASN A 371 50.48 28.04 REMARK 500 GLU A 382 141.81 -37.30 REMARK 500 ASN A 389 -33.50 65.11 REMARK 500 PRO A 395 175.03 -51.38 REMARK 500 ALA A 396 178.64 -41.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 103 O REMARK 620 2 ASP A 106 OD1 65.1 REMARK 620 3 THR A 114 O 63.0 104.4 REMARK 620 4 THR A 114 OG1 63.9 56.3 53.2 REMARK 620 5 SER A 276 O 89.6 154.5 57.3 110.3 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KLO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THREE CONSECUTIVE LAMININ-TYPE EPIDERMAL REMARK 900 GROWTH FACTOR-LIKE (LE) MODULES OF LAMININ GAMMA1 CHAIN HARBORING REMARK 900 THE NIDOGEN BINDING SITE REMARK 900 RELATED ID: 1NPE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NIDOGEN/LAMININ COMPLEX REMARK 900 RELATED ID: 1TLE RELATED DB: PDB REMARK 900 LE (LAMININ-TYPE EGF-LIKE) MODULE GIII4 IN SOLUTION AT PH 3.5 AND REMARK 900 290 K, NMR, 14 STRUCTURES REMARK 900 RELATED ID: 4AQS RELATED DB: PDB REMARK 900 LAMININ BETA1 LN-LE1-4 STRUCTURE DBREF 4AQT A 33 395 UNP P02468 LAMC1_MOUSE 33 395 SEQADV 4AQT ALA A 30 UNP P02468 EXPRESSION TAG SEQADV 4AQT PRO A 31 UNP P02468 EXPRESSION TAG SEQADV 4AQT LEU A 32 UNP P02468 EXPRESSION TAG SEQADV 4AQT CYS A 337 UNP P02468 SER 337 CONFLICT SEQADV 4AQT ALA A 396 UNP P02468 EXPRESSION TAG SEQADV 4AQT ALA A 397 UNP P02468 EXPRESSION TAG SEQADV 4AQT ALA A 398 UNP P02468 EXPRESSION TAG SEQADV 4AQT HIS A 399 UNP P02468 EXPRESSION TAG SEQADV 4AQT HIS A 400 UNP P02468 EXPRESSION TAG SEQADV 4AQT HIS A 401 UNP P02468 EXPRESSION TAG SEQADV 4AQT HIS A 402 UNP P02468 EXPRESSION TAG SEQADV 4AQT HIS A 403 UNP P02468 EXPRESSION TAG SEQADV 4AQT HIS A 404 UNP P02468 EXPRESSION TAG SEQRES 1 A 375 ALA PRO LEU ALA ALA MET ASP GLU CYS ALA ASP GLU GLY SEQRES 2 A 375 GLY ARG PRO GLN ARG CYS MET PRO GLU PHE VAL ASN ALA SEQRES 3 A 375 ALA PHE ASN VAL THR VAL VAL ALA THR ASN THR CYS GLY SEQRES 4 A 375 THR PRO PRO GLU GLU TYR CYS VAL GLN THR GLY VAL THR SEQRES 5 A 375 GLY VAL THR LYS SER CYS HIS LEU CYS ASP ALA GLY GLN SEQRES 6 A 375 GLN HIS LEU GLN HIS GLY ALA ALA PHE LEU THR ASP TYR SEQRES 7 A 375 ASN ASN GLN ALA ASP THR THR TRP TRP GLN SER GLN THR SEQRES 8 A 375 MET LEU ALA GLY VAL GLN TYR PRO ASN SER ILE ASN LEU SEQRES 9 A 375 THR LEU HIS LEU GLY LYS ALA PHE ASP ILE THR TYR VAL SEQRES 10 A 375 ARG LEU LYS PHE HIS THR SER ARG PRO GLU SER PHE ALA SEQRES 11 A 375 ILE TYR LYS ARG THR ARG GLU ASP GLY PRO TRP ILE PRO SEQRES 12 A 375 TYR GLN TYR TYR SER GLY SER CYS GLU ASN THR TYR SER SEQRES 13 A 375 LYS ALA ASN ARG GLY PHE ILE ARG THR GLY GLY ASP GLU SEQRES 14 A 375 GLN GLN ALA LEU CYS THR ASP GLU PHE SER ASP ILE SER SEQRES 15 A 375 PRO LEU THR GLY GLY ASN VAL ALA PHE SER THR LEU GLU SEQRES 16 A 375 GLY ARG PRO SER ALA TYR ASN PHE ASP ASN SER PRO VAL SEQRES 17 A 375 LEU GLN GLU TRP VAL THR ALA THR ASP ILE ARG VAL THR SEQRES 18 A 375 LEU ASN ARG LEU ASN THR PHE GLY ASP GLU VAL PHE ASN SEQRES 19 A 375 GLU PRO LYS VAL LEU LYS SER TYR TYR TYR ALA ILE SER SEQRES 20 A 375 ASP PHE ALA VAL GLY GLY ARG CYS LYS CYS ASN GLY HIS SEQRES 21 A 375 ALA SER GLU CYS VAL LYS ASN GLU PHE ASP LYS LEU MET SEQRES 22 A 375 CYS ASN CYS LYS HIS ASN THR TYR GLY VAL ASP CYS GLU SEQRES 23 A 375 LYS CYS LEU PRO PHE PHE ASN ASP ARG PRO TRP ARG ARG SEQRES 24 A 375 ALA THR ALA GLU SER ALA SER GLU CYS LEU PRO CYS ASP SEQRES 25 A 375 CYS ASN GLY ARG SER GLN GLU CYS TYR PHE ASP PRO GLU SEQRES 26 A 375 LEU TYR ARG SER THR GLY HIS GLY GLY HIS CYS THR ASN SEQRES 27 A 375 CYS ARG ASP ASN THR ASP GLY ALA LYS CYS GLU ARG CYS SEQRES 28 A 375 ARG GLU ASN PHE PHE ARG LEU GLY ASN THR GLU ALA CYS SEQRES 29 A 375 SER PRO ALA ALA ALA HIS HIS HIS HIS HIS HIS MODRES 4AQT ASN A 58 ASN GLYCOSYLATION SITE MODRES 4AQT ASN A 132 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET CA A1001 1 HET NAG A2001 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 3 CA CA 2+ HELIX 1 1 GLY A 100 THR A 105 5 6 HELIX 2 2 THR A 120 GLY A 124 5 5 HELIX 3 3 SER A 179 SER A 185 1 7 HELIX 4 4 SER A 228 ASN A 234 5 7 HELIX 5 5 SER A 235 VAL A 242 1 8 HELIX 6 6 GLY A 258 PHE A 262 5 5 HELIX 7 7 GLU A 264 LYS A 269 1 6 HELIX 8 8 ASP A 341 ARG A 345 5 5 HELIX 9 9 ASP A 352 THR A 359 1 8 SHEET 1 AA 2 VAL A 53 ASN A 54 0 SHEET 2 AA 2 ALA A 274 CYS A 284 -1 O GLY A 282 N VAL A 53 SHEET 1 AB 2 VAL A 62 ALA A 63 0 SHEET 2 AB 2 ILE A 131 PHE A 150 -1 O THR A 134 N VAL A 62 SHEET 1 AC 2 TRP A 116 GLN A 117 0 SHEET 2 AC 2 ALA A 274 CYS A 284 -1 O ILE A 275 N TRP A 116 SHEET 1 AD 6 LEU A 202 THR A 204 0 SHEET 2 AD 6 ILE A 171 SER A 177 1 O TYR A 173 N LEU A 202 SHEET 3 AD 6 SER A 157 ARG A 163 -1 O PHE A 158 N TYR A 176 SHEET 4 AD 6 THR A 243 ARG A 253 -1 N THR A 245 O ARG A 163 SHEET 5 AD 6 ILE A 131 PHE A 150 -1 O ILE A 131 N LEU A 251 SHEET 6 AD 6 GLY A 216 SER A 221 -1 O GLY A 216 N PHE A 150 SHEET 1 AE 7 LEU A 202 THR A 204 0 SHEET 2 AE 7 ILE A 171 SER A 177 1 O TYR A 173 N LEU A 202 SHEET 3 AE 7 SER A 157 ARG A 163 -1 O PHE A 158 N TYR A 176 SHEET 4 AE 7 THR A 243 ARG A 253 -1 N THR A 245 O ARG A 163 SHEET 5 AE 7 ILE A 131 PHE A 150 -1 O ILE A 131 N LEU A 251 SHEET 6 AE 7 ALA A 274 CYS A 284 -1 N SER A 276 O LYS A 149 SHEET 7 AE 7 TRP A 116 GLN A 117 -1 O TRP A 116 N ILE A 275 SHEET 1 AF 2 GLY A 216 SER A 221 0 SHEET 2 AF 2 ILE A 131 PHE A 150 -1 O VAL A 146 N PHE A 220 SHEET 1 AG 6 LEU A 202 THR A 204 0 SHEET 2 AG 6 ILE A 171 SER A 177 1 O TYR A 173 N LEU A 202 SHEET 3 AG 6 SER A 157 ARG A 163 -1 O PHE A 158 N TYR A 176 SHEET 4 AG 6 THR A 243 ARG A 253 -1 N THR A 245 O ARG A 163 SHEET 5 AG 6 ILE A 131 PHE A 150 -1 O ILE A 131 N LEU A 251 SHEET 6 AG 6 VAL A 62 ALA A 63 -1 O VAL A 62 N THR A 134 SHEET 1 AH 2 GLU A 72 CYS A 75 0 SHEET 2 AH 2 CYS A 87 CYS A 90 -1 O HIS A 88 N TYR A 74 SHEET 1 AI 2 CYS A 293 LYS A 295 0 SHEET 2 AI 2 LEU A 301 CYS A 303 -1 O MET A 302 N VAL A 294 SHEET 1 AJ 2 THR A 309 TYR A 310 0 SHEET 2 AJ 2 LYS A 316 CYS A 317 -1 O LYS A 316 N TYR A 310 SHEET 1 AK 2 CYS A 349 PHE A 351 0 SHEET 2 AK 2 GLY A 363 CYS A 365 -1 O HIS A 364 N TYR A 350 SHEET 1 AL 2 THR A 372 ASP A 373 0 SHEET 2 AL 2 ARG A 379 CYS A 380 -1 O ARG A 379 N ASP A 373 SHEET 1 AM 2 PHE A 384 PHE A 385 0 SHEET 2 AM 2 SER A 394 PRO A 395 -1 O SER A 394 N PHE A 385 SSBOND 1 CYS A 38 CYS A 48 1555 1555 2.03 SSBOND 2 CYS A 67 CYS A 90 1555 1555 2.04 SSBOND 3 CYS A 75 CYS A 87 1555 1555 2.04 SSBOND 4 CYS A 180 CYS A 203 1555 1555 2.04 SSBOND 5 CYS A 284 CYS A 293 1555 1555 2.05 SSBOND 6 CYS A 286 CYS A 303 1555 1555 2.04 SSBOND 7 CYS A 305 CYS A 314 1555 1555 2.04 SSBOND 8 CYS A 317 CYS A 337 1555 1555 2.04 SSBOND 9 CYS A 340 CYS A 349 1555 1555 2.03 SSBOND 10 CYS A 342 CYS A 365 1555 1555 2.04 SSBOND 11 CYS A 368 CYS A 377 1555 1555 2.03 SSBOND 12 CYS A 380 CYS A 393 1555 1555 2.04 LINK ND2 ASN A 58 C1 NAG A2001 1555 1555 1.46 LINK ND2 ASN A 132 C1 NAG B 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.37 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.39 LINK O PHE A 103 CA CA A1001 1555 1555 2.87 LINK OD1 ASP A 106 CA CA A1001 1555 1555 2.60 LINK O THR A 114 CA CA A1001 1555 1555 3.02 LINK OG1 THR A 114 CA CA A1001 1555 1555 2.51 LINK O SER A 276 CA CA A1001 1555 1555 2.47 CISPEP 1 THR A 69 PRO A 70 0 -0.23 CISPEP 2 TYR A 127 PRO A 128 0 -0.06 CRYST1 203.010 203.010 93.690 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004926 0.002844 0.000000 0.00000 SCALE2 0.000000 0.005688 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010673 0.00000