HEADER HYDROLASE 19-APR-12 4AQU TITLE CRYSTAL STRUCTURE OF I-CREI COMPLEXED WITH ITS TARGET METHYLATED AT TITLE 2 POSITION PLUS 2 (IN THE B STRAND) IN THE PRESENCE OF CALCIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA ENDONUCLEASE I-CREI; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 2-153; COMPND 5 SYNONYM: 23S RRNA INTRON PROTEIN; COMPND 6 EC: 3.1.-.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-D(*DTP*CP*AP*AP*AP*AP*CP*GP*TP*CP*GP*TP*GP*DAP COMPND 10 *GP*AP*CP*AP*GP*TP*TP*TP*GP*G)-3'; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: 5'-D(*DCP*CP*AP*AP*AP*CP*TP*GP*TP*CP*TP*CP*AP*5CMP COMPND 15 *GP*AP*CP*GP*TP*TP*TP*TP*GP*A)-3'; COMPND 16 CHAIN: D; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLAMYDOMONAS REINHARDTII; SOURCE 3 ORGANISM_TAXID: 3055; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET24D; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: CDFDUET1; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS HYDROLASE, GENE TARGETING, PROTEIN-DNA INTERACTION, HOMING KEYWDS 2 ENDONUCLEASES EXPDTA X-RAY DIFFRACTION AUTHOR J.VALTON,F.DABOUSSI,S.LEDUC,P.REDONDO,R.MACMASTER,R.MOLINA,G.MONTOYA, AUTHOR 2 P.DUCHATEAU REVDAT 3 20-DEC-23 4AQU 1 REMARK LINK REVDAT 2 12-SEP-12 4AQU 1 JRNL REVDAT 1 04-JUL-12 4AQU 0 JRNL AUTH J.VALTON,F.DABOUSSI,S.LEDUC,R.MOLINA,P.REDONDO,R.MACMASTER, JRNL AUTH 2 G.MONTOYA,P.DUCHATEAU JRNL TITL 5'-CYTOSINE-PHOSPHOGUANINE (CPG) METHYLATION IMPACTS THE JRNL TITL 2 ACTIVITY OF NATURAL AND ENGINEERED MEGANUCLEASES. JRNL REF J.BIOL.CHEM. V. 287 30139 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22740697 JRNL DOI 10.1074/JBC.M112.379966 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 25711 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.8095 - 5.5402 1.00 1845 155 0.1766 0.1921 REMARK 3 2 5.5402 - 4.3986 1.00 1741 147 0.1329 0.1677 REMARK 3 3 4.3986 - 3.8429 1.00 1705 144 0.1488 0.2027 REMARK 3 4 3.8429 - 3.4917 1.00 1698 143 0.1900 0.2515 REMARK 3 5 3.4917 - 3.2415 1.00 1693 142 0.1881 0.2509 REMARK 3 6 3.2415 - 3.0505 1.00 1696 143 0.2023 0.2672 REMARK 3 7 3.0505 - 2.8977 1.00 1694 142 0.2135 0.2526 REMARK 3 8 2.8977 - 2.7716 1.00 1677 142 0.2284 0.3138 REMARK 3 9 2.7716 - 2.6649 1.00 1653 138 0.2443 0.3361 REMARK 3 10 2.6649 - 2.5730 1.00 1679 142 0.2462 0.3203 REMARK 3 11 2.5730 - 2.4925 1.00 1663 138 0.2799 0.3615 REMARK 3 12 2.4925 - 2.4213 1.00 1667 141 0.3074 0.3819 REMARK 3 13 2.4213 - 2.3575 0.99 1637 138 0.3417 0.4141 REMARK 3 14 2.3575 - 2.3000 0.99 1668 140 0.3739 0.4124 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 31.78 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.920 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 5.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.14440 REMARK 3 B22 (A**2) : 4.26540 REMARK 3 B33 (A**2) : -2.12100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3634 REMARK 3 ANGLE : 1.227 5132 REMARK 3 CHIRALITY : 0.068 579 REMARK 3 PLANARITY : 0.004 476 REMARK 3 DIHEDRAL : 22.911 1424 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4AQU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-APR-12. REMARK 100 THE DEPOSITION ID IS D_1290052137. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25711 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 44.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1G9Y REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,-Y,-Z+1/2 REMARK 290 4555 -X+1/2,-Y,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.79000 REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 86.16550 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.79000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 86.16550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 DT C 401 C4' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP2 DG D 515 O HOH A 2003 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT C 412 C5 DT C 412 C7 0.040 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA C 403 O4' - C1' - N9 ANGL. DEV. = -5.0 DEGREES REMARK 500 DT C 412 C4 - C5 - C7 ANGL. DEV. = 4.5 DEGREES REMARK 500 DT C 412 C6 - C5 - C7 ANGL. DEV. = -5.5 DEGREES REMARK 500 DG C 413 O4' - C1' - N9 ANGL. DEV. = -5.5 DEGREES REMARK 500 DA C 416 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 DG C 423 C3' - C2' - C1' ANGL. DEV. = -5.6 DEGREES REMARK 500 DG C 423 O4' - C1' - N9 ANGL. DEV. = 4.1 DEGREES REMARK 500 DC D 501 O4' - C1' - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC D 502 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT D 509 C3' - C2' - C1' ANGL. DEV. = -5.7 DEGREES REMARK 500 DG D 515 O4' - C1' - N9 ANGL. DEV. = -4.3 DEGREES REMARK 500 DA D 516 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 DT D 521 O4' - C1' - N1 ANGL. DEV. = -5.1 DEGREES REMARK 500 DT D 522 O4' - C1' - N1 ANGL. DEV. = -4.4 DEGREES REMARK 500 DA D 524 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 30 110.60 -162.56 REMARK 500 LYS A 139 -14.17 -140.93 REMARK 500 LEU A 152 34.61 -66.03 REMARK 500 ASN B 230 107.86 -160.27 REMARK 500 LYS B 296 -39.17 -132.21 REMARK 500 SER B 345 7.72 -69.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1156 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 19 O REMARK 620 2 HOH A2001 O 92.5 REMARK 620 3 HOH A2002 O 94.1 69.7 REMARK 620 4 ASP B 220 OD2 91.7 80.7 150.0 REMARK 620 5 ASP B 220 OD1 82.9 132.0 158.1 51.9 REMARK 620 6 DA C 414 OP1 170.1 85.1 94.1 78.4 91.5 REMARK 620 7 DG D 515 OP2 80.3 147.0 78.7 131.3 79.4 106.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1154 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 20 OD1 REMARK 620 2 ASP A 20 OD2 52.3 REMARK 620 3 HOH A2005 O 129.0 76.8 REMARK 620 4 HOH A2052 O 156.1 151.6 74.8 REMARK 620 5 GLY B 219 O 85.0 84.4 88.3 95.2 REMARK 620 6 DG C 415 OP2 76.8 128.5 152.5 79.5 84.4 REMARK 620 7 5CM D 514 OP1 95.5 89.0 84.6 87.8 171.3 104.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1154 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1156 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1354 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AF5 RELATED DB: PDB REMARK 900 GROUP I MOBILE INTRON ENDONUCLEASE REMARK 900 RELATED ID: 1BP7 RELATED DB: PDB REMARK 900 GROUP I MOBILE INTRON ENDONUCLEASE I-CREI COMPLEXED WITH HOMING REMARK 900 SITE DEOXYRIBONUCLEIC ACID REMARK 900 RELATED ID: 1G9Y RELATED DB: PDB REMARK 900 HOMING ENDONUCLEASE I-CREI / DNA SUBSTRATE COMPLEX WITHCALCIUM REMARK 900 RELATED ID: 1G9Z RELATED DB: PDB REMARK 900 LAGLIDADG HOMING ENDONUCLEASE I-CREI / DNA PRODUCT COMPLEXWITH REMARK 900 MAGNESIUM REMARK 900 RELATED ID: 1MOW RELATED DB: PDB REMARK 900 E-DREI REMARK 900 RELATED ID: 1N3E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF I-CREI BOUND TO A PALINDROMIC DNASEQUENCE I REMARK 900 (PALINDROME OF LEFT SIDE OF WILDTYPE DNA TARGETSEQUENCE) REMARK 900 RELATED ID: 1N3F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF I-CREI BOUND TO A PALINDROMIC DNASEQUENCE II REMARK 900 (PALINDROME OF RIGHT SIDE OF WILDTYPE DNATARGET SEQUENCE) REMARK 900 RELATED ID: 1T9I RELATED DB: PDB REMARK 900 I-CREI(D20N)/DNA COMPLEX REMARK 900 RELATED ID: 1T9J RELATED DB: PDB REMARK 900 I-CREI(Q47E)/DNA COMPLEX REMARK 900 RELATED ID: 1U0C RELATED DB: PDB REMARK 900 Y33C MUTATANT OF HOMING ENDONUCLEASE I-CREI REMARK 900 RELATED ID: 1U0D RELATED DB: PDB REMARK 900 Y33H MUTATANT OF HOMING ENDONUCLEASE I-CREI REMARK 900 RELATED ID: 2VBJ RELATED DB: PDB REMARK 900 MOLECULAR BASIS OF HUMAN XPC GENE RECOGNITION AND CLEAVAGE BY REMARK 900 ENGINEERED HOMING ENDONUCLEASE HETERODIMERS REMARK 900 RELATED ID: 2VBL RELATED DB: PDB REMARK 900 MOLECULAR BASIS OF HUMAN XPC GENE RECOGNITION AND CLEAVAGE BY REMARK 900 ENGINEERED HOMING ENDONUCLEASE HETERODIMERS REMARK 900 RELATED ID: 2VBN RELATED DB: PDB REMARK 900 MOLECULAR BASIS OF HUMAN XPC GENE RECOGNITION AND CLEAVAGE BY REMARK 900 ENGINEERED HOMING ENDONUCLEASE HETERODIMERS REMARK 900 RELATED ID: 2VBO RELATED DB: PDB REMARK 900 MOLECULAR BASIS OF HUMAN XPC GENE RECOGNITION AND CLEAVAGE BY REMARK 900 ENGINEERED HOMING ENDONUCLEASE HETERODIMERS REMARK 900 RELATED ID: 4AAB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTANT D75N I-CREI IN COMPLEX WITH ITS REMARK 900 WILD-TYPE TARGET (THE FOUR CENTRAL BASES, 2NN REGION, ARE COMPOSED REMARK 900 BY GTAC FROM 5' TO 3') REMARK 900 RELATED ID: 4AAD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTANT D75N I-CREI IN COMPLEX WITH ITS REMARK 900 WILD-TYPE TARGET IN ABSENCE OF METAL IONS AT THE ACTIVE SITE (THE REMARK 900 FOUR CENTRAL BASES, 2NN REGION, ARE COMPOSED BY GTAC FROM 5' TO 3') REMARK 900 RELATED ID: 4AAE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTANT D75N I-CREI IN COMPLEX WITH AN REMARK 900 ALTERED TARGET (THE FOUR CENTRAL BASES , 2NN REGION, ARE COMPOSED REMARK 900 BY AGCG FROM 5' TO 3') REMARK 900 RELATED ID: 4AAF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTANT D75N I-CREI IN COMPLEX WITH AN REMARK 900 ALTERED TARGET (THE FOUR CENTRAL BASES , 2NN REGION, ARE COMPOSED REMARK 900 BY TGCA FROM 5' TO 3') REMARK 900 RELATED ID: 4AAG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE MUTANT D75N I-CREI IN COMPLEX WITH ITS REMARK 900 WILD-TYPE TARGET IN PRESENCE OF CA AT THE ACTIVE SITE (THE FOUR REMARK 900 CENTRAL BASES, 2NN REGION, ARE COMPOSED BY GTAC FROM 5' TO 3') DBREF 4AQU A 2 153 UNP P05725 DNE1_CHLRE 2 153 DBREF 4AQU B 202 353 UNP P05725 DNE1_CHLRE 2 153 DBREF 4AQU C 401 424 PDB 4AQU 4AQU 401 424 DBREF 4AQU D 501 524 PDB 4AQU 4AQU 501 524 SEQRES 1 A 152 ASN THR LYS TYR ASN LYS GLU PHE LEU LEU TYR LEU ALA SEQRES 2 A 152 GLY PHE VAL ASP GLY ASP GLY SER ILE ILE ALA GLN ILE SEQRES 3 A 152 LYS PRO ASN GLN SER TYR LYS PHE LYS HIS GLN LEU SER SEQRES 4 A 152 LEU THR PHE GLN VAL THR GLN LYS THR GLN ARG ARG TRP SEQRES 5 A 152 PHE LEU ASP LYS LEU VAL ASP GLU ILE GLY VAL GLY TYR SEQRES 6 A 152 VAL ARG ASP ARG GLY SER VAL SER ASP TYR ILE LEU SER SEQRES 7 A 152 GLU ILE LYS PRO LEU HIS ASN PHE LEU THR GLN LEU GLN SEQRES 8 A 152 PRO PHE LEU LYS LEU LYS GLN LYS GLN ALA ASN LEU VAL SEQRES 9 A 152 LEU LYS ILE ILE GLU GLN LEU PRO SER ALA LYS GLU SER SEQRES 10 A 152 PRO ASP LYS PHE LEU GLU VAL CYS THR TRP VAL ASP GLN SEQRES 11 A 152 ILE ALA ALA LEU ASN ASP SER LYS THR ARG LYS THR THR SEQRES 12 A 152 SER GLU THR VAL ARG ALA VAL LEU ASP SEQRES 1 B 152 ASN THR LYS TYR ASN LYS GLU PHE LEU LEU TYR LEU ALA SEQRES 2 B 152 GLY PHE VAL ASP GLY ASP GLY SER ILE ILE ALA GLN ILE SEQRES 3 B 152 LYS PRO ASN GLN SER TYR LYS PHE LYS HIS GLN LEU SER SEQRES 4 B 152 LEU THR PHE GLN VAL THR GLN LYS THR GLN ARG ARG TRP SEQRES 5 B 152 PHE LEU ASP LYS LEU VAL ASP GLU ILE GLY VAL GLY TYR SEQRES 6 B 152 VAL ARG ASP ARG GLY SER VAL SER ASP TYR ILE LEU SER SEQRES 7 B 152 GLU ILE LYS PRO LEU HIS ASN PHE LEU THR GLN LEU GLN SEQRES 8 B 152 PRO PHE LEU LYS LEU LYS GLN LYS GLN ALA ASN LEU VAL SEQRES 9 B 152 LEU LYS ILE ILE GLU GLN LEU PRO SER ALA LYS GLU SER SEQRES 10 B 152 PRO ASP LYS PHE LEU GLU VAL CYS THR TRP VAL ASP GLN SEQRES 11 B 152 ILE ALA ALA LEU ASN ASP SER LYS THR ARG LYS THR THR SEQRES 12 B 152 SER GLU THR VAL ARG ALA VAL LEU ASP SEQRES 1 C 24 DT DC DA DA DA DA DC DG DT DC DG DT DG SEQRES 2 C 24 DA DG DA DC DA DG DT DT DT DG DG SEQRES 1 D 24 DC DC DA DA DA DC DT DG DT DC DT DC DA SEQRES 2 D 24 5CM DG DA DC DG DT DT DT DT DG DA MODRES 4AQU 5CM D 514 DC HET 5CM D 514 20 HET CA A1154 1 HET GOL A1155 6 HET CA A1156 1 HET GOL B1354 6 HETNAM 5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 5CM C10 H16 N3 O7 P FORMUL 5 CA 2(CA 2+) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 9 HOH *102(H2 O) HELIX 1 1 ASN A 6 ASP A 20 1 15 HELIX 2 2 ARG A 51 GLY A 63 1 13 HELIX 3 3 GLU A 80 GLN A 92 1 13 HELIX 4 4 PRO A 93 LEU A 95 5 3 HELIX 5 5 LYS A 98 LYS A 116 1 19 HELIX 6 6 SER A 118 ASN A 136 1 19 HELIX 7 7 THR A 144 ALA A 150 1 7 HELIX 8 8 ASN B 206 ASP B 220 1 15 HELIX 9 9 ARG B 251 GLY B 263 1 13 HELIX 10 10 GLU B 280 GLN B 292 1 13 HELIX 11 11 PRO B 293 LEU B 295 5 3 HELIX 12 12 LYS B 298 GLU B 310 1 13 HELIX 13 13 GLN B 311 ALA B 315 5 5 HELIX 14 14 SER B 318 ASN B 336 1 19 HELIX 15 15 THR B 344 LEU B 352 1 9 SHEET 1 AA 4 GLY A 21 PRO A 29 0 SHEET 2 AA 4 HIS A 37 LYS A 48 -1 O GLN A 38 N LYS A 28 SHEET 3 AA 4 VAL A 73 LEU A 78 -1 O SER A 74 N GLN A 47 SHEET 4 AA 4 TYR A 66 ASP A 69 -1 O TYR A 66 N ILE A 77 SHEET 1 BA 4 GLY B 221 PRO B 229 0 SHEET 2 BA 4 HIS B 237 LYS B 248 -1 O GLN B 238 N LYS B 228 SHEET 3 BA 4 VAL B 273 LEU B 278 -1 O SER B 274 N GLN B 247 SHEET 4 BA 4 TYR B 266 ARG B 270 -1 O TYR B 266 N ILE B 277 LINK O3' DA D 513 P 5CM D 514 1555 1555 1.61 LINK O3' 5CM D 514 P DG D 515 1555 1555 1.62 LINK O GLY A 19 CA CA A1156 1555 1555 2.32 LINK OD1 ASP A 20 CA CA A1154 1555 1555 2.54 LINK OD2 ASP A 20 CA CA A1154 1555 1555 2.44 LINK CA CA A1154 O HOH A2005 1555 1555 2.48 LINK CA CA A1154 O HOH A2052 1555 1555 2.36 LINK CA CA A1154 O GLY B 219 1555 1555 2.45 LINK CA CA A1154 OP2 DG C 415 1555 1555 2.34 LINK CA CA A1154 OP1 5CM D 514 1555 1555 2.22 LINK CA CA A1156 O HOH A2001 1555 1555 2.51 LINK CA CA A1156 O HOH A2002 1555 1555 2.39 LINK CA CA A1156 OD2 ASP B 220 1555 1555 2.42 LINK CA CA A1156 OD1 ASP B 220 1555 1555 2.61 LINK CA CA A1156 OP1 DA C 414 1555 1555 2.29 LINK CA CA A1156 OP2 DG D 515 1555 1555 2.29 SITE 1 AC1 6 ASP A 20 HOH A2005 HOH A2052 GLY B 219 SITE 2 AC1 6 DG C 415 5CM D 514 SITE 1 AC2 8 LEU A 97 LYS A 98 GLN A 101 LEU A 135 SITE 2 AC2 8 ASN A 136 HOH A2001 ARG B 251 DA D 516 SITE 1 AC3 6 GLY A 19 HOH A2001 HOH A2002 ASP B 220 SITE 2 AC3 6 DA C 414 DG D 515 SITE 1 AC4 8 ARG A 51 HOH A2052 LEU B 297 LYS B 298 SITE 2 AC4 8 GLN B 301 LEU B 335 ASN B 336 DA C 416 CRYST1 71.580 45.355 172.331 90.00 90.00 90.00 P 21 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013970 0.000000 0.000000 0.00000 SCALE2 0.000000 0.022048 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005803 0.00000