HEADER HYDROLASE 24-APR-12 4ARJ TITLE CRYSTAL STRUCTURE OF A PESTICIN (TRANSLOCATION AND RECEPTOR BINDING TITLE 2 DOMAIN) FROM Y. PESTIS AND T4-LYSOZYME CHIMERA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PESTICIN, LYSOZYME; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN OF PESTICIN, RESIDUES 1-167; COMPND 5 SYNONYM: ENDOLYSIN, LYSIS PROTEIN, MURAMIDASE; COMPND 6 EC: 3.2.1.17; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: CHIMERA OF THE N-TERMINAL DOMAIN OF PESTICIN FROM Y. COMPND 10 PESTIS AND T4 LYSOZYME SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS, ENTEROBACTERIA PHAGE T4; SOURCE 3 ORGANISM_TAXID: 632, 10665; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.ZETH,S.I.PATZER,R.ALBRECHT,V.BRAUN REVDAT 7 08-MAY-24 4ARJ 1 REMARK REVDAT 6 15-MAR-17 4ARJ 1 SOURCE REVDAT 5 25-SEP-13 4ARJ 1 REMARK REVDAT 4 31-OCT-12 4ARJ 1 AUTHOR REVDAT 3 18-JUL-12 4ARJ 1 JRNL REVDAT 2 30-MAY-12 4ARJ 1 JRNL REMARK REVDAT 1 09-MAY-12 4ARJ 0 JRNL AUTH S.I.PATZER,R.ALBRECHT,V.BRAUN,K.ZETH JRNL TITL STRUCTURE AND MECHANISTIC STUDIES OF PESTICIN, A BACTERIAL JRNL TITL 2 HOMOLOG OF PHAGE LYSOZYMES. JRNL REF J.BIOL.CHEM. V. 287 23381 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22593569 JRNL DOI 10.1074/JBC.M112.362913 REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 33200 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1660 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 72.9835 - 5.9352 0.98 2743 144 0.1915 0.2447 REMARK 3 2 5.9352 - 4.7112 0.98 2652 140 0.1763 0.2053 REMARK 3 3 4.7112 - 4.1157 0.98 2644 139 0.1439 0.1759 REMARK 3 4 4.1157 - 3.7395 0.99 2612 138 0.1627 0.1987 REMARK 3 5 3.7395 - 3.4714 0.99 2644 139 0.1830 0.1997 REMARK 3 6 3.4714 - 3.2668 1.00 2674 140 0.1961 0.2544 REMARK 3 7 3.2668 - 3.1032 1.00 2647 140 0.2162 0.3001 REMARK 3 8 3.1032 - 2.9681 1.00 2650 139 0.2140 0.2759 REMARK 3 9 2.9681 - 2.8538 1.00 2623 138 0.2354 0.3008 REMARK 3 10 2.8538 - 2.7553 1.00 2663 140 0.2427 0.3084 REMARK 3 11 2.7553 - 2.6692 1.00 2621 138 0.2567 0.3233 REMARK 3 12 2.6692 - 2.5929 0.90 2367 125 0.2617 0.3043 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 49.36 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.41960 REMARK 3 B22 (A**2) : -1.49000 REMARK 3 B33 (A**2) : -2.92960 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.56040 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 5411 REMARK 3 ANGLE : 1.483 7011 REMARK 3 CHIRALITY : 0.110 788 REMARK 3 PLANARITY : 0.006 900 REMARK 3 DIHEDRAL : 15.911 1967 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 13:152) REMARK 3 ORIGIN FOR THE GROUP (A): 84.5179 45.3980 18.3649 REMARK 3 T TENSOR REMARK 3 T11: 0.3129 T22: 0.6648 REMARK 3 T33: 0.6488 T12: -0.0545 REMARK 3 T13: -0.2169 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 0.1089 L22: 0.0592 REMARK 3 L33: 0.0710 L12: -0.0618 REMARK 3 L13: 0.0075 L23: -0.0482 REMARK 3 S TENSOR REMARK 3 S11: 0.0506 S12: -0.0244 S13: -0.0800 REMARK 3 S21: 0.0477 S22: 0.0143 S23: -0.0649 REMARK 3 S31: 0.0778 S32: 0.2096 S33: -0.0722 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 153:334) REMARK 3 ORIGIN FOR THE GROUP (A): 54.7116 46.0471 7.5322 REMARK 3 T TENSOR REMARK 3 T11: 0.0862 T22: 0.0355 REMARK 3 T33: 0.0504 T12: 0.0018 REMARK 3 T13: 0.0052 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.2374 L22: 0.1621 REMARK 3 L33: 0.0555 L12: 0.0698 REMARK 3 L13: -0.0180 L23: 0.0318 REMARK 3 S TENSOR REMARK 3 S11: -0.0036 S12: -0.0342 S13: -0.1109 REMARK 3 S21: 0.1326 S22: -0.0091 S23: -0.0109 REMARK 3 S31: 0.0480 S32: 0.0045 S33: -0.0064 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 12:85) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3352 16.3477 37.1073 REMARK 3 T TENSOR REMARK 3 T11: 0.2652 T22: 0.6913 REMARK 3 T33: 0.5894 T12: -0.0270 REMARK 3 T13: -0.2108 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.1114 L22: 0.1297 REMARK 3 L33: 0.0907 L12: 0.0008 REMARK 3 L13: 0.0546 L23: 0.0077 REMARK 3 S TENSOR REMARK 3 S11: 0.0561 S12: 0.0088 S13: -0.0119 REMARK 3 S21: 0.0152 S22: -0.0253 S23: 0.0416 REMARK 3 S31: 0.0403 S32: -0.0588 S33: 0.0508 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 86:152) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0981 24.7200 42.7982 REMARK 3 T TENSOR REMARK 3 T11: 0.1696 T22: 0.5633 REMARK 3 T33: 0.5328 T12: 0.0773 REMARK 3 T13: -0.1598 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 0.0628 L22: 0.0959 REMARK 3 L33: 0.0069 L12: -0.0327 REMARK 3 L13: -0.0178 L23: 0.0135 REMARK 3 S TENSOR REMARK 3 S11: 0.0420 S12: 0.0008 S13: 0.0248 REMARK 3 S21: -0.0192 S22: -0.0304 S23: 0.0250 REMARK 3 S31: -0.0005 S32: -0.0288 S33: 0.1134 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 153:205) REMARK 3 ORIGIN FOR THE GROUP (A): 39.3292 25.4443 40.8298 REMARK 3 T TENSOR REMARK 3 T11: 0.2122 T22: 0.0532 REMARK 3 T33: 0.1236 T12: -0.0272 REMARK 3 T13: -0.0255 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.1960 L22: 0.2441 REMARK 3 L33: 0.1968 L12: -0.1644 REMARK 3 L13: 0.1824 L23: -0.1053 REMARK 3 S TENSOR REMARK 3 S11: 0.1229 S12: 0.0530 S13: 0.0039 REMARK 3 S21: -0.2202 S22: -0.0337 S23: -0.0481 REMARK 3 S31: 0.0913 S32: 0.0370 S33: 0.0025 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 206:334) REMARK 3 ORIGIN FOR THE GROUP (A): 40.7589 21.0307 50.4006 REMARK 3 T TENSOR REMARK 3 T11: 0.0753 T22: -0.0349 REMARK 3 T33: -0.0615 T12: -0.0323 REMARK 3 T13: 0.0501 T23: 0.0737 REMARK 3 L TENSOR REMARK 3 L11: 0.0977 L22: 0.1876 REMARK 3 L33: 0.0078 L12: 0.0914 REMARK 3 L13: -0.0004 L23: 0.0243 REMARK 3 S TENSOR REMARK 3 S11: -0.0647 S12: 0.0345 S13: -0.0274 REMARK 3 S21: -0.1191 S22: 0.0505 S23: 0.0285 REMARK 3 S31: -0.0421 S32: 0.0086 S33: -0.0450 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ARJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-APR-12. REMARK 100 THE DEPOSITION ID IS D_1290052205. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33200 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 73.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.800 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350 0.15 M K2(SO4), PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 97.43700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.75350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 97.43700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.75350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 THR A 4 REMARK 465 MET A 5 REMARK 465 VAL A 6 REMARK 465 VAL A 7 REMARK 465 ASN A 8 REMARK 465 GLY A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 GLY A 12 REMARK 465 PHE A 30 REMARK 465 GLU A 31 REMARK 465 ALA A 32 REMARK 465 ASN A 33 REMARK 465 HIS A 335 REMARK 465 HIS A 336 REMARK 465 HIS A 337 REMARK 465 HIS A 338 REMARK 465 HIS A 339 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASP B 3 REMARK 465 THR B 4 REMARK 465 MET B 5 REMARK 465 VAL B 6 REMARK 465 VAL B 7 REMARK 465 ASN B 8 REMARK 465 GLY B 9 REMARK 465 SER B 10 REMARK 465 PRO B 28 REMARK 465 ASN B 29 REMARK 465 PHE B 30 REMARK 465 GLU B 31 REMARK 465 ALA B 32 REMARK 465 ASN B 33 REMARK 465 SER B 34 REMARK 465 HIS B 335 REMARK 465 HIS B 336 REMARK 465 HIS B 337 REMARK 465 HIS B 338 REMARK 465 HIS B 339 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 70 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 174 CA - CB - CG ANGL. DEV. = -14.4 DEGREES REMARK 500 LEU B 174 CA - CB - CG ANGL. DEV. = -15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 15 -74.67 -82.16 REMARK 500 ILE A 196 -78.73 -100.89 REMARK 500 ALA B 15 -75.48 -75.05 REMARK 500 LYS B 67 -133.84 48.71 REMARK 500 ASP B 187 -178.39 -67.97 REMARK 500 ILE B 196 -75.60 -81.63 REMARK 500 PRO B 204 47.32 -88.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 197 HIS A 198 -135.02 REMARK 500 GLY B 197 HIS B 198 -146.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1336 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1337 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1336 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1337 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1338 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4AQN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PESTICIN FROM Y. PESTIS REMARK 900 RELATED ID: 4ARL RELATED DB: PDB REMARK 900 STRUCTURE OF THE INACTIVE PESTICIN D207A MUTANT REMARK 900 RELATED ID: 4ARM RELATED DB: PDB REMARK 900 STRUCTURE OF THE INACTIVE PESTICIN T201A MUTANT REMARK 900 RELATED ID: 4ARP RELATED DB: PDB REMARK 900 STRUCTURE OF THE INACTIVE PESTICIN E178A MUTANT REMARK 900 RELATED ID: 4ARQ RELATED DB: PDB REMARK 900 STRUCTURE OF THE INACTIVE PESTICIN T201A MUTANT DBREF 4ARJ A 1 167 UNP Q57159 Q57159_YERPE 1 167 DBREF 4ARJ A 169 331 UNP P00720 LYS_BPT4 2 164 DBREF 4ARJ B 1 167 UNP Q57159 Q57159_YERPE 1 167 DBREF 4ARJ B 169 331 UNP P00720 LYS_BPT4 2 164 SEQADV 4ARJ VAL A 168 UNP P00720 EXPRESSION TAG SEQADV 4ARJ THR A 221 UNP P00720 CYS 54 ENGINEERED MUTATION SEQADV 4ARJ ALA A 264 UNP P00720 CYS 97 ENGINEERED MUTATION SEQADV 4ARJ PHE A 332 UNP P00720 EXPRESSION TAG SEQADV 4ARJ GLU A 333 UNP P00720 EXPRESSION TAG SEQADV 4ARJ HIS A 334 UNP P00720 EXPRESSION TAG SEQADV 4ARJ HIS A 335 UNP P00720 EXPRESSION TAG SEQADV 4ARJ HIS A 336 UNP P00720 EXPRESSION TAG SEQADV 4ARJ HIS A 337 UNP P00720 EXPRESSION TAG SEQADV 4ARJ HIS A 338 UNP P00720 EXPRESSION TAG SEQADV 4ARJ HIS A 339 UNP P00720 EXPRESSION TAG SEQADV 4ARJ VAL B 168 UNP P00720 EXPRESSION TAG SEQADV 4ARJ THR B 221 UNP P00720 CYS 54 ENGINEERED MUTATION SEQADV 4ARJ ALA B 264 UNP P00720 CYS 97 ENGINEERED MUTATION SEQADV 4ARJ PHE B 332 UNP P00720 EXPRESSION TAG SEQADV 4ARJ GLU B 333 UNP P00720 EXPRESSION TAG SEQADV 4ARJ HIS B 334 UNP P00720 EXPRESSION TAG SEQADV 4ARJ HIS B 335 UNP P00720 EXPRESSION TAG SEQADV 4ARJ HIS B 336 UNP P00720 EXPRESSION TAG SEQADV 4ARJ HIS B 337 UNP P00720 EXPRESSION TAG SEQADV 4ARJ HIS B 338 UNP P00720 EXPRESSION TAG SEQADV 4ARJ HIS B 339 UNP P00720 EXPRESSION TAG SEQRES 1 A 339 MET SER ASP THR MET VAL VAL ASN GLY SER GLY GLY VAL SEQRES 2 A 339 PRO ALA PHE LEU PHE SER GLY SER THR LEU SER SER TYR SEQRES 3 A 339 ARG PRO ASN PHE GLU ALA ASN SER ILE THR ILE ALA LEU SEQRES 4 A 339 PRO HIS TYR VAL ASP LEU PRO GLY ARG SER ASN PHE LYS SEQRES 5 A 339 LEU MET TYR ILE MET GLY PHE PRO ILE ASP THR GLU MET SEQRES 6 A 339 GLU LYS ASP SER GLU TYR SER ASN LYS ILE ARG GLN GLU SEQRES 7 A 339 SER LYS ILE SER LYS THR GLU GLY THR VAL SER TYR GLU SEQRES 8 A 339 GLN LYS ILE THR VAL GLU THR GLY GLN GLU LYS ASP GLY SEQRES 9 A 339 VAL LYS VAL TYR ARG VAL MET VAL LEU GLU GLY THR ILE SEQRES 10 A 339 ALA GLU SER ILE GLU HIS LEU ASP LYS LYS GLU ASN GLU SEQRES 11 A 339 ASP ILE LEU ASN ASN ASN ARG ASN ARG ILE VAL LEU ALA SEQRES 12 A 339 ASP ASN THR VAL ILE ASN PHE ASP ASN ILE SER GLN LEU SEQRES 13 A 339 LYS GLU PHE LEU ARG ARG SER VAL ASN ILE VAL VAL ASN SEQRES 14 A 339 ILE PHE GLU MET LEU ARG ILE ASP GLU GLY LEU ARG LEU SEQRES 15 A 339 LYS ILE TYR LYS ASP THR GLU GLY TYR TYR THR ILE GLY SEQRES 16 A 339 ILE GLY HIS LEU LEU THR LYS SER PRO SER LEU ASN ALA SEQRES 17 A 339 ALA LYS SER GLU LEU ASP LYS ALA ILE GLY ARG ASN THR SEQRES 18 A 339 ASN GLY VAL ILE THR LYS ASP GLU ALA GLU LYS LEU PHE SEQRES 19 A 339 ASN GLN ASP VAL ASP ALA ALA VAL ARG GLY ILE LEU ARG SEQRES 20 A 339 ASN ALA LYS LEU LYS PRO VAL TYR ASP SER LEU ASP ALA SEQRES 21 A 339 VAL ARG ARG ALA ALA LEU ILE ASN MET VAL PHE GLN MET SEQRES 22 A 339 GLY GLU THR GLY VAL ALA GLY PHE THR ASN SER LEU ARG SEQRES 23 A 339 MET LEU GLN GLN LYS ARG TRP ASP GLU ALA ALA VAL ASN SEQRES 24 A 339 LEU ALA LYS SER ARG TRP TYR ASN GLN THR PRO ASN ARG SEQRES 25 A 339 ALA LYS ARG VAL ILE THR THR PHE ARG THR GLY THR TRP SEQRES 26 A 339 ASP ALA TYR LYS ASN LEU PHE GLU HIS HIS HIS HIS HIS SEQRES 27 A 339 HIS SEQRES 1 B 339 MET SER ASP THR MET VAL VAL ASN GLY SER GLY GLY VAL SEQRES 2 B 339 PRO ALA PHE LEU PHE SER GLY SER THR LEU SER SER TYR SEQRES 3 B 339 ARG PRO ASN PHE GLU ALA ASN SER ILE THR ILE ALA LEU SEQRES 4 B 339 PRO HIS TYR VAL ASP LEU PRO GLY ARG SER ASN PHE LYS SEQRES 5 B 339 LEU MET TYR ILE MET GLY PHE PRO ILE ASP THR GLU MET SEQRES 6 B 339 GLU LYS ASP SER GLU TYR SER ASN LYS ILE ARG GLN GLU SEQRES 7 B 339 SER LYS ILE SER LYS THR GLU GLY THR VAL SER TYR GLU SEQRES 8 B 339 GLN LYS ILE THR VAL GLU THR GLY GLN GLU LYS ASP GLY SEQRES 9 B 339 VAL LYS VAL TYR ARG VAL MET VAL LEU GLU GLY THR ILE SEQRES 10 B 339 ALA GLU SER ILE GLU HIS LEU ASP LYS LYS GLU ASN GLU SEQRES 11 B 339 ASP ILE LEU ASN ASN ASN ARG ASN ARG ILE VAL LEU ALA SEQRES 12 B 339 ASP ASN THR VAL ILE ASN PHE ASP ASN ILE SER GLN LEU SEQRES 13 B 339 LYS GLU PHE LEU ARG ARG SER VAL ASN ILE VAL VAL ASN SEQRES 14 B 339 ILE PHE GLU MET LEU ARG ILE ASP GLU GLY LEU ARG LEU SEQRES 15 B 339 LYS ILE TYR LYS ASP THR GLU GLY TYR TYR THR ILE GLY SEQRES 16 B 339 ILE GLY HIS LEU LEU THR LYS SER PRO SER LEU ASN ALA SEQRES 17 B 339 ALA LYS SER GLU LEU ASP LYS ALA ILE GLY ARG ASN THR SEQRES 18 B 339 ASN GLY VAL ILE THR LYS ASP GLU ALA GLU LYS LEU PHE SEQRES 19 B 339 ASN GLN ASP VAL ASP ALA ALA VAL ARG GLY ILE LEU ARG SEQRES 20 B 339 ASN ALA LYS LEU LYS PRO VAL TYR ASP SER LEU ASP ALA SEQRES 21 B 339 VAL ARG ARG ALA ALA LEU ILE ASN MET VAL PHE GLN MET SEQRES 22 B 339 GLY GLU THR GLY VAL ALA GLY PHE THR ASN SER LEU ARG SEQRES 23 B 339 MET LEU GLN GLN LYS ARG TRP ASP GLU ALA ALA VAL ASN SEQRES 24 B 339 LEU ALA LYS SER ARG TRP TYR ASN GLN THR PRO ASN ARG SEQRES 25 B 339 ALA LYS ARG VAL ILE THR THR PHE ARG THR GLY THR TRP SEQRES 26 B 339 ASP ALA TYR LYS ASN LEU PHE GLU HIS HIS HIS HIS HIS SEQRES 27 B 339 HIS HET SO4 A1336 5 HET SO4 A1337 5 HET SO4 B1336 5 HET SO4 B1337 5 HET SO4 B1338 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 5(O4 S 2-) FORMUL 8 HOH *78(H2 O) HELIX 1 1 ILE A 35 LEU A 39 5 5 HELIX 2 2 THR A 116 LEU A 124 1 9 HELIX 3 3 LYS A 126 ASN A 135 1 10 HELIX 4 4 ASN A 152 GLY A 179 1 28 HELIX 5 5 SER A 205 GLY A 218 1 14 HELIX 6 6 THR A 226 ASN A 248 1 23 HELIX 7 7 LEU A 251 LEU A 258 1 8 HELIX 8 8 ASP A 259 GLY A 274 1 16 HELIX 9 9 GLY A 274 GLY A 280 1 7 HELIX 10 10 PHE A 281 GLN A 290 1 10 HELIX 11 11 ARG A 292 ALA A 301 1 10 HELIX 12 12 SER A 303 THR A 309 1 7 HELIX 13 13 THR A 309 GLY A 323 1 15 HELIX 14 14 TYR A 328 PHE A 332 5 5 HELIX 15 15 ILE B 35 LEU B 39 5 5 HELIX 16 16 THR B 116 LYS B 126 1 11 HELIX 17 17 ASN B 129 ASN B 136 1 8 HELIX 18 18 ASN B 152 GLU B 178 1 27 HELIX 19 19 SER B 205 GLY B 218 1 14 HELIX 20 20 THR B 226 ASN B 248 1 23 HELIX 21 21 LEU B 251 LEU B 258 1 8 HELIX 22 22 ASP B 259 GLY B 280 1 22 HELIX 23 23 PHE B 281 GLN B 290 1 10 HELIX 24 24 ARG B 292 ALA B 301 1 10 HELIX 25 25 SER B 303 THR B 309 1 7 HELIX 26 26 THR B 309 GLY B 323 1 15 HELIX 27 27 TYR B 328 PHE B 332 5 5 SHEET 1 AA 2 LEU A 23 SER A 24 0 SHEET 2 AA 2 VAL A 105 GLY A 115 1 O MET A 111 N LEU A 23 SHEET 1 AB 4 HIS A 41 ASP A 44 0 SHEET 2 AB 4 LYS A 52 ILE A 56 -1 O LEU A 53 N VAL A 43 SHEET 3 AB 4 PHE A 59 MET A 65 -1 O PHE A 59 N ILE A 56 SHEET 4 AB 4 ASN A 73 LYS A 74 -1 O ASN A 73 N MET A 65 SHEET 1 AC 7 HIS A 41 ASP A 44 0 SHEET 2 AC 7 LYS A 52 ILE A 56 -1 O LEU A 53 N VAL A 43 SHEET 3 AC 7 PHE A 59 MET A 65 -1 O PHE A 59 N ILE A 56 SHEET 4 AC 7 VAL A 105 GLY A 115 -1 O LYS A 106 N GLU A 64 SHEET 5 AC 7 ILE A 94 LYS A 102 -1 O ILE A 94 N GLY A 115 SHEET 6 AC 7 ARG A 137 VAL A 141 -1 O ARG A 137 N GLY A 99 SHEET 7 AC 7 VAL A 147 ASN A 149 -1 O ILE A 148 N ILE A 140 SHEET 1 AD 5 HIS A 41 ASP A 44 0 SHEET 2 AD 5 LYS A 52 ILE A 56 -1 O LEU A 53 N VAL A 43 SHEET 3 AD 5 PHE A 59 MET A 65 -1 O PHE A 59 N ILE A 56 SHEET 4 AD 5 VAL A 105 GLY A 115 -1 O LYS A 106 N GLU A 64 SHEET 5 AD 5 LEU A 23 SER A 24 1 O LEU A 23 N LEU A 113 SHEET 1 AE 2 ASN A 73 LYS A 74 0 SHEET 2 AE 2 PHE A 59 MET A 65 -1 O THR A 63 N ASN A 73 SHEET 1 AF 3 ARG A 181 LYS A 186 0 SHEET 2 AF 3 TYR A 192 GLY A 195 -1 O THR A 193 N TYR A 185 SHEET 3 AF 3 LEU A 199 THR A 201 -1 N LEU A 200 O TYR A 192 SHEET 1 BA 2 LEU B 23 SER B 24 0 SHEET 2 BA 2 VAL B 105 GLY B 115 1 O MET B 111 N LEU B 23 SHEET 1 BB 4 HIS B 41 ASP B 44 0 SHEET 2 BB 4 LYS B 52 ILE B 56 -1 O LEU B 53 N VAL B 43 SHEET 3 BB 4 PHE B 59 MET B 65 -1 O PHE B 59 N ILE B 56 SHEET 4 BB 4 ASN B 73 LYS B 74 -1 O ASN B 73 N MET B 65 SHEET 1 BC 7 HIS B 41 ASP B 44 0 SHEET 2 BC 7 LYS B 52 ILE B 56 -1 O LEU B 53 N VAL B 43 SHEET 3 BC 7 PHE B 59 MET B 65 -1 O PHE B 59 N ILE B 56 SHEET 4 BC 7 VAL B 105 GLY B 115 -1 O LYS B 106 N GLU B 64 SHEET 5 BC 7 ILE B 94 LYS B 102 -1 O ILE B 94 N GLY B 115 SHEET 6 BC 7 ARG B 137 VAL B 141 -1 O ARG B 137 N GLY B 99 SHEET 7 BC 7 VAL B 147 PHE B 150 -1 O ILE B 148 N ILE B 140 SHEET 1 BD 5 HIS B 41 ASP B 44 0 SHEET 2 BD 5 LYS B 52 ILE B 56 -1 O LEU B 53 N VAL B 43 SHEET 3 BD 5 PHE B 59 MET B 65 -1 O PHE B 59 N ILE B 56 SHEET 4 BD 5 VAL B 105 GLY B 115 -1 O LYS B 106 N GLU B 64 SHEET 5 BD 5 LEU B 23 SER B 24 1 O LEU B 23 N LEU B 113 SHEET 1 BE 2 ASN B 73 LYS B 74 0 SHEET 2 BE 2 PHE B 59 MET B 65 -1 O THR B 63 N ASN B 73 SHEET 1 BF 3 ARG B 181 LYS B 186 0 SHEET 2 BF 3 TYR B 192 GLY B 195 -1 O THR B 193 N TYR B 185 SHEET 3 BF 3 HIS B 198 THR B 201 -1 O HIS B 198 N ILE B 194 SITE 1 AC1 6 ILE A 176 ASP A 177 GLU A 178 GLY A 179 SITE 2 AC1 6 LYS A 250 THR A 282 SITE 1 AC2 6 LYS A 250 THR A 309 PRO A 310 ASN A 311 SITE 2 AC2 6 ARG A 312 HOH A2007 SITE 1 AC3 5 LYS B 250 THR B 309 PRO B 310 ASN B 311 SITE 2 AC3 5 ARG B 312 SITE 1 AC4 3 ILE B 176 ASP B 177 LYS B 250 SITE 1 AC5 3 LYS A 215 ARG B 286 ARG B 292 CRYST1 194.874 51.507 107.921 90.00 91.01 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005132 0.000000 0.000090 0.00000 SCALE2 0.000000 0.019415 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009267 0.00000