HEADER HYDROLASE 25-APR-12 4ARQ TITLE STRUCTURE OF THE PESTICIN S89C, S285C DOUBLE MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PESTICIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PESTICIN; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 632; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: T7, PET; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 11 ORGANISM_TAXID: 632; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: T7, PET KEYWDS HYDROLASE, MURAMIDASE EXPDTA X-RAY DIFFRACTION AUTHOR K.ZETH,S.I.PATZER,R.ALBRECHT,V.BRAUN REVDAT 4 20-DEC-23 4ARQ 1 REMARK REVDAT 3 18-JUL-12 4ARQ 1 JRNL REVDAT 2 30-MAY-12 4ARQ 1 JRNL REVDAT 1 09-MAY-12 4ARQ 0 JRNL AUTH S.I.PATZER,R.ALBRECHT,V.BRAUN,K.ZETH JRNL TITL STRUCTURE AND MECHANISTIC STUDIES OF PESTICIN, A BACTERIAL JRNL TITL 2 HOMOLOG OF PHAGE LYSOZYMES. JRNL REF J.BIOL.CHEM. V. 287 23381 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22593569 JRNL DOI 10.1074/JBC.M112.362913 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.320 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 42460 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2132 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.5250 - 6.4015 0.96 2731 146 0.1771 0.1641 REMARK 3 2 6.4015 - 5.0854 0.96 2677 140 0.2029 0.2295 REMARK 3 3 5.0854 - 4.4439 0.94 2666 146 0.1700 0.2229 REMARK 3 4 4.4439 - 4.0381 0.94 2669 137 0.1819 0.2158 REMARK 3 5 4.0381 - 3.7490 0.95 2685 146 0.1992 0.2285 REMARK 3 6 3.7490 - 3.5282 0.95 2698 139 0.2402 0.2594 REMARK 3 7 3.5282 - 3.3516 0.96 2715 144 0.2489 0.3072 REMARK 3 8 3.3516 - 3.2058 0.96 2676 143 0.2666 0.3268 REMARK 3 9 3.2058 - 3.0824 0.95 2714 145 0.2781 0.3231 REMARK 3 10 3.0824 - 2.9761 0.96 2669 137 0.2735 0.3439 REMARK 3 11 2.9761 - 2.8831 0.95 2737 147 0.2894 0.3140 REMARK 3 12 2.8831 - 2.8007 0.95 2657 140 0.3013 0.3136 REMARK 3 13 2.8007 - 2.7270 0.94 2679 144 0.3051 0.3335 REMARK 3 14 2.7270 - 2.6605 0.95 2687 140 0.3124 0.3772 REMARK 3 15 2.6605 - 2.6000 0.95 2668 138 0.3283 0.3711 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.29 REMARK 3 B_SOL : 25.44 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 10.47230 REMARK 3 B22 (A**2) : 1.26520 REMARK 3 B33 (A**2) : -11.73750 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 6.17520 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 5508 REMARK 3 ANGLE : 1.463 7431 REMARK 3 CHIRALITY : 0.094 819 REMARK 3 PLANARITY : 0.007 972 REMARK 3 DIHEDRAL : 14.607 2064 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 13:164) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8267 6.8661 -39.3171 REMARK 3 T TENSOR REMARK 3 T11: 0.1438 T22: 0.5192 REMARK 3 T33: -0.7503 T12: -0.0457 REMARK 3 T13: -0.0236 T23: -0.3809 REMARK 3 L TENSOR REMARK 3 L11: 0.7923 L22: 0.8054 REMARK 3 L33: 1.2365 L12: 0.1431 REMARK 3 L13: -0.4892 L23: -0.1466 REMARK 3 S TENSOR REMARK 3 S11: 0.1275 S12: 1.1545 S13: -0.0486 REMARK 3 S21: -0.5252 S22: 0.1695 S23: 0.0721 REMARK 3 S31: 0.2187 S32: -0.1964 S33: 0.6306 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 165:357) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1317 -4.8461 -8.8352 REMARK 3 T TENSOR REMARK 3 T11: 0.3220 T22: -0.0736 REMARK 3 T33: 0.0045 T12: -0.0706 REMARK 3 T13: 0.1899 T23: -0.0779 REMARK 3 L TENSOR REMARK 3 L11: 1.8574 L22: 2.6457 REMARK 3 L33: 0.5285 L12: 0.7266 REMARK 3 L13: -0.4520 L23: -0.0808 REMARK 3 S TENSOR REMARK 3 S11: 0.3933 S12: -0.6995 S13: 0.2993 REMARK 3 S21: 1.2361 S22: -0.1895 S23: 0.6172 REMARK 3 S31: -0.1768 S32: 0.0465 S33: 0.1612 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 13:152) REMARK 3 ORIGIN FOR THE GROUP (A): -19.4180 8.6732 50.1846 REMARK 3 T TENSOR REMARK 3 T11: 0.9015 T22: 1.4505 REMARK 3 T33: 0.2504 T12: -0.2002 REMARK 3 T13: 0.1936 T23: -0.1056 REMARK 3 L TENSOR REMARK 3 L11: 0.4248 L22: 0.3216 REMARK 3 L33: 1.4051 L12: -0.0549 REMARK 3 L13: -0.1907 L23: -0.1217 REMARK 3 S TENSOR REMARK 3 S11: -0.0657 S12: -0.4390 S13: 0.0778 REMARK 3 S21: 0.2855 S22: -0.0930 S23: 0.0801 REMARK 3 S31: 0.1096 S32: -0.5985 S33: -0.3780 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 153:357) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9712 -3.8857 20.6779 REMARK 3 T TENSOR REMARK 3 T11: 0.8016 T22: 0.2575 REMARK 3 T33: 0.1013 T12: -0.0210 REMARK 3 T13: 0.2734 T23: -0.0785 REMARK 3 L TENSOR REMARK 3 L11: 0.4833 L22: 0.4789 REMARK 3 L33: 1.5772 L12: 0.0831 REMARK 3 L13: -0.4096 L23: 0.1772 REMARK 3 S TENSOR REMARK 3 S11: -0.2763 S12: 0.0178 S13: -0.3019 REMARK 3 S21: -0.0793 S22: -0.1349 S23: -0.2553 REMARK 3 S31: 1.0745 S32: -0.0185 S33: -0.0778 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ARQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-APR-12. REMARK 100 THE DEPOSITION ID IS D_1290052223. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22615 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 36.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 97.80 REMARK 200 R MERGE FOR SHELL (I) : 0.21000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4AQN REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG8000, 0.2M MGCL2, 0.1M HEPES PH REMARK 280 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.05900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, SER 89 TO CYS REMARK 400 ENGINEERED RESIDUE IN CHAIN A, SER 285 TO CYS REMARK 400 ENGINEERED RESIDUE IN CHAIN B, SER 89 TO CYS REMARK 400 ENGINEERED RESIDUE IN CHAIN B, SER 285 TO CYS REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 THR A 4 REMARK 465 MET A 5 REMARK 465 VAL A 6 REMARK 465 VAL A 7 REMARK 465 ASN A 8 REMARK 465 GLY A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 GLY A 12 REMARK 465 GLU A 31 REMARK 465 ALA A 32 REMARK 465 ASN A 33 REMARK 465 SER A 34 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ASP B 3 REMARK 465 THR B 4 REMARK 465 MET B 5 REMARK 465 VAL B 6 REMARK 465 VAL B 7 REMARK 465 ASN B 8 REMARK 465 GLY B 9 REMARK 465 SER B 10 REMARK 465 GLY B 11 REMARK 465 GLY B 12 REMARK 465 PRO B 28 REMARK 465 ASN B 29 REMARK 465 PHE B 30 REMARK 465 GLU B 31 REMARK 465 ALA B 32 REMARK 465 ASN B 33 REMARK 465 SER B 34 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2050 O HOH A 2051 1.87 REMARK 500 OD1 ASN B 279 O HOH B 2042 1.90 REMARK 500 O HOH B 2024 O HOH B 2026 1.91 REMARK 500 OD1 ASN A 189 OG SER A 192 1.92 REMARK 500 O LYS B 341 O HOH B 2048 1.94 REMARK 500 O THR B 246 O HOH B 2036 1.99 REMARK 500 O GLY B 231 O HOH B 2034 1.99 REMARK 500 OD1 ASN A 254 O HOH A 2049 1.99 REMARK 500 O PRO B 182 O HOH B 2025 2.01 REMARK 500 O HOH A 2001 O HOH A 2002 2.02 REMARK 500 O GLY A 209 O HOH A 2040 2.03 REMARK 500 O HOH A 2011 O HOH A 2012 2.05 REMARK 500 OE1 GLU A 91 O HOH A 2021 2.06 REMARK 500 O GLU B 128 O HOH B 2017 2.06 REMARK 500 O ASP B 230 O HOH B 2033 2.07 REMARK 500 OE1 GLN B 77 O HOH B 2007 2.10 REMARK 500 OD2 ASP B 170 O HOH B 2021 2.10 REMARK 500 OG SER A 21 OE2 GLU A 128 2.11 REMARK 500 OD1 ASN B 315 O HOH B 2046 2.12 REMARK 500 O THR B 36 O HOH B 2003 2.12 REMARK 500 O THR B 36 O HOH B 2002 2.13 REMARK 500 OD1 ASP A 68 NZ LYS A 74 2.14 REMARK 500 OD2 ASP B 207 O HOH B 2030 2.14 REMARK 500 OE1 GLU B 255 O HOH B 2037 2.15 REMARK 500 O ILE B 61 O HOH B 2005 2.15 REMARK 500 O HOH A 2043 O HOH A 2055 2.17 REMARK 500 N VAL A 200 O HOH A 2037 2.17 REMARK 500 O GLN B 92 O HOH B 2015 2.17 REMARK 500 OE1 GLN B 301 NH2 ARG B 340 2.18 REMARK 500 O SER A 192 O HOH A 2034 2.19 REMARK 500 OD1 ASN B 152 OG SER B 154 2.19 REMARK 500 O ILE A 61 O HOH A 2004 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE B 37 CG1 - CB - CG2 ANGL. DEV. = -14.2 DEGREES REMARK 500 LYS B 213 CG - CD - CE ANGL. DEV. = -19.5 DEGREES REMARK 500 CYS B 285 CA - CB - SG ANGL. DEV. = 8.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 15 -128.64 -62.51 REMARK 500 PHE A 16 66.27 -43.43 REMARK 500 ASN A 29 -119.03 76.06 REMARK 500 THR A 36 38.95 -170.07 REMARK 500 MET A 57 -137.46 58.56 REMARK 500 ASN A 145 -0.37 77.58 REMARK 500 PHE A 177 -87.67 -121.60 REMARK 500 SER A 204 77.44 -103.88 REMARK 500 MET A 234 -4.05 68.69 REMARK 500 ALA B 15 -44.58 55.29 REMARK 500 ASN B 145 -2.59 76.12 REMARK 500 PHE B 177 -87.76 -122.36 REMARK 500 SER B 204 77.16 -101.78 REMARK 500 MET B 234 -3.35 69.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 50 PHE A 51 143.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4AQN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PESTICIN FROM Y. PESTIS REMARK 900 RELATED ID: 4ARJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A PESTICIN (TRANSLOCATION AND RECEPTOR BINDING REMARK 900 DOMAIN) FROM Y. PESTIS AND T4- LYSOZYME CHIMERA REMARK 900 RELATED ID: 4ARL RELATED DB: PDB REMARK 900 STRUCTURE OF THE INACTIVE PESTICIN D207A MUTANT REMARK 900 RELATED ID: 4ARM RELATED DB: PDB REMARK 900 STRUCTURE OF THE INACTIVE PESTICIN T201A MUTANT REMARK 900 RELATED ID: 4ARP RELATED DB: PDB REMARK 900 STRUCTURE OF THE INACTIVE PESTICIN E178A MUTANT DBREF 4ARQ A 1 357 UNP Q57159 Q57159_YERPE 1 357 DBREF 4ARQ B 1 357 UNP Q57159 Q57159_YERPE 1 357 SEQADV 4ARQ ASN A 44 UNP Q57159 ASP 44 CONFLICT SEQADV 4ARQ CYS A 89 UNP Q57159 SER 89 ENGINEERED MUTATION SEQADV 4ARQ CYS A 285 UNP Q57159 SER 285 ENGINEERED MUTATION SEQADV 4ARQ CYS B 89 UNP Q57159 SER 89 ENGINEERED MUTATION SEQADV 4ARQ CYS B 285 UNP Q57159 SER 285 ENGINEERED MUTATION SEQRES 1 A 357 MET SER ASP THR MET VAL VAL ASN GLY SER GLY GLY VAL SEQRES 2 A 357 PRO ALA PHE LEU PHE SER GLY SER THR LEU SER SER TYR SEQRES 3 A 357 ARG PRO ASN PHE GLU ALA ASN SER ILE THR ILE ALA LEU SEQRES 4 A 357 PRO HIS TYR VAL ASN LEU PRO GLY ARG SER ASN PHE LYS SEQRES 5 A 357 LEU MET TYR ILE MET GLY PHE PRO ILE ASP THR GLU MET SEQRES 6 A 357 GLU LYS ASP SER GLU TYR SER ASN LYS ILE ARG GLN GLU SEQRES 7 A 357 SER LYS ILE SER LYS THR GLU GLY THR VAL CYS TYR GLU SEQRES 8 A 357 GLN LYS ILE THR VAL GLU THR GLY GLN GLU LYS ASP GLY SEQRES 9 A 357 VAL LYS VAL TYR ARG VAL MET VAL LEU GLU GLY THR ILE SEQRES 10 A 357 ALA GLU SER ILE GLU HIS LEU ASP LYS LYS GLU ASN GLU SEQRES 11 A 357 ASP ILE LEU ASN ASN ASN ARG ASN ARG ILE VAL LEU ALA SEQRES 12 A 357 ASP ASN THR VAL ILE ASN PHE ASP ASN ILE SER GLN LEU SEQRES 13 A 357 LYS GLU PHE LEU ARG ARG SER VAL ASN ILE VAL ASP HIS SEQRES 14 A 357 ASP ILE PHE SER SER ASN GLY PHE GLU GLY PHE ASN PRO SEQRES 15 A 357 THR SER HIS PHE PRO SER ASN PRO SER SER ASP TYR PHE SEQRES 16 A 357 ASN SER THR GLY VAL THR PHE GLY SER GLY VAL ASP LEU SEQRES 17 A 357 GLY GLN ARG SER LYS GLN ASP LEU LEU ASN ASP GLY VAL SEQRES 18 A 357 PRO GLN TYR ILE ALA ASP ARG LEU ASP GLY TYR TYR MET SEQRES 19 A 357 LEU ARG GLY LYS GLU ALA TYR ASP LYS VAL ARG THR ALA SEQRES 20 A 357 PRO LEU THR LEU SER ASP ASN GLU ALA HIS LEU LEU SER SEQRES 21 A 357 ASN ILE TYR ILE ASP LYS PHE SER HIS LYS ILE GLU GLY SEQRES 22 A 357 LEU PHE ASN ASP ALA ASN ILE GLY LEU ARG PHE CYS ASP SEQRES 23 A 357 LEU PRO LEU ARG THR ARG THR ALA LEU VAL SER ILE GLY SEQRES 24 A 357 TYR GLN LYS GLY PHE LYS LEU SER ARG THR ALA PRO THR SEQRES 25 A 357 VAL TRP ASN LYS VAL ILE ALA LYS ASP TRP ASN GLY LEU SEQRES 26 A 357 VAL ASN ALA PHE ASN ASN ILE VAL ASP GLY MET SER ASP SEQRES 27 A 357 ARG ARG LYS ARG GLU GLY ALA LEU VAL GLN LYS ASP ILE SEQRES 28 A 357 ASP SER GLY LEU LEU LYS SEQRES 1 B 357 MET SER ASP THR MET VAL VAL ASN GLY SER GLY GLY VAL SEQRES 2 B 357 PRO ALA PHE LEU PHE SER GLY SER THR LEU SER SER TYR SEQRES 3 B 357 ARG PRO ASN PHE GLU ALA ASN SER ILE THR ILE ALA LEU SEQRES 4 B 357 PRO HIS TYR VAL ASP LEU PRO GLY ARG SER ASN PHE LYS SEQRES 5 B 357 LEU MET TYR ILE MET GLY PHE PRO ILE ASP THR GLU MET SEQRES 6 B 357 GLU LYS ASP SER GLU TYR SER ASN LYS ILE ARG GLN GLU SEQRES 7 B 357 SER LYS ILE SER LYS THR GLU GLY THR VAL CYS TYR GLU SEQRES 8 B 357 GLN LYS ILE THR VAL GLU THR GLY GLN GLU LYS ASP GLY SEQRES 9 B 357 VAL LYS VAL TYR ARG VAL MET VAL LEU GLU GLY THR ILE SEQRES 10 B 357 ALA GLU SER ILE GLU HIS LEU ASP LYS LYS GLU ASN GLU SEQRES 11 B 357 ASP ILE LEU ASN ASN ASN ARG ASN ARG ILE VAL LEU ALA SEQRES 12 B 357 ASP ASN THR VAL ILE ASN PHE ASP ASN ILE SER GLN LEU SEQRES 13 B 357 LYS GLU PHE LEU ARG ARG SER VAL ASN ILE VAL ASP HIS SEQRES 14 B 357 ASP ILE PHE SER SER ASN GLY PHE GLU GLY PHE ASN PRO SEQRES 15 B 357 THR SER HIS PHE PRO SER ASN PRO SER SER ASP TYR PHE SEQRES 16 B 357 ASN SER THR GLY VAL THR PHE GLY SER GLY VAL ASP LEU SEQRES 17 B 357 GLY GLN ARG SER LYS GLN ASP LEU LEU ASN ASP GLY VAL SEQRES 18 B 357 PRO GLN TYR ILE ALA ASP ARG LEU ASP GLY TYR TYR MET SEQRES 19 B 357 LEU ARG GLY LYS GLU ALA TYR ASP LYS VAL ARG THR ALA SEQRES 20 B 357 PRO LEU THR LEU SER ASP ASN GLU ALA HIS LEU LEU SER SEQRES 21 B 357 ASN ILE TYR ILE ASP LYS PHE SER HIS LYS ILE GLU GLY SEQRES 22 B 357 LEU PHE ASN ASP ALA ASN ILE GLY LEU ARG PHE CYS ASP SEQRES 23 B 357 LEU PRO LEU ARG THR ARG THR ALA LEU VAL SER ILE GLY SEQRES 24 B 357 TYR GLN LYS GLY PHE LYS LEU SER ARG THR ALA PRO THR SEQRES 25 B 357 VAL TRP ASN LYS VAL ILE ALA LYS ASP TRP ASN GLY LEU SEQRES 26 B 357 VAL ASN ALA PHE ASN ASN ILE VAL ASP GLY MET SER ASP SEQRES 27 B 357 ARG ARG LYS ARG GLU GLY ALA LEU VAL GLN LYS ASP ILE SEQRES 28 B 357 ASP SER GLY LEU LEU LYS HET MG B1358 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG MG 2+ FORMUL 4 HOH *115(H2 O) HELIX 1 1 THR A 116 ASP A 125 1 10 HELIX 2 2 LYS A 126 GLU A 128 5 3 HELIX 3 3 ASN A 129 ASN A 135 1 7 HELIX 4 4 ASN A 152 ASN A 165 1 14 HELIX 5 5 ASP A 168 SER A 173 1 6 HELIX 6 6 SER A 212 ASP A 219 1 8 HELIX 7 7 PRO A 222 LEU A 229 1 8 HELIX 8 8 ARG A 236 ALA A 247 1 12 HELIX 9 9 SER A 252 ALA A 278 1 27 HELIX 10 10 ARG A 283 LEU A 287 5 5 HELIX 11 11 PRO A 288 GLY A 303 1 16 HELIX 12 12 LYS A 305 ALA A 310 1 6 HELIX 13 13 ALA A 310 ALA A 319 1 10 HELIX 14 14 ASP A 321 ASN A 331 1 11 HELIX 15 15 MET A 336 SER A 353 1 18 HELIX 16 16 THR B 116 ASP B 125 1 10 HELIX 17 17 LYS B 126 GLU B 128 5 3 HELIX 18 18 ASN B 129 ASN B 135 1 7 HELIX 19 19 ASN B 152 ASN B 165 1 14 HELIX 20 20 ASP B 168 SER B 173 1 6 HELIX 21 21 TYR B 194 THR B 198 5 5 HELIX 22 22 SER B 212 ASP B 219 1 8 HELIX 23 23 PRO B 222 LEU B 229 1 8 HELIX 24 24 GLY B 237 ALA B 247 1 11 HELIX 25 25 SER B 252 ALA B 278 1 27 HELIX 26 26 ARG B 283 LEU B 287 5 5 HELIX 27 27 PRO B 288 GLY B 303 1 16 HELIX 28 28 LYS B 305 ALA B 310 1 6 HELIX 29 29 ALA B 310 ALA B 319 1 10 HELIX 30 30 ASP B 321 ILE B 332 1 12 HELIX 31 31 MET B 336 SER B 353 1 18 SHEET 1 AA 2 LEU A 23 SER A 24 0 SHEET 2 AA 2 VAL A 105 GLY A 115 -1 O MET A 111 N LEU A 23 SHEET 1 AB 7 HIS A 41 ASN A 44 0 SHEET 2 AB 7 LYS A 52 ILE A 56 -1 O LEU A 53 N VAL A 43 SHEET 3 AB 7 PHE A 59 MET A 65 -1 O PHE A 59 N ILE A 56 SHEET 4 AB 7 VAL A 105 GLY A 115 -1 O LYS A 106 N GLU A 64 SHEET 5 AB 7 ILE A 94 LYS A 102 -1 O ILE A 94 N GLY A 115 SHEET 6 AB 7 ARG A 137 VAL A 141 -1 O ARG A 137 N GLY A 99 SHEET 7 AB 7 VAL A 147 PHE A 150 -1 O ILE A 148 N ILE A 140 SHEET 1 AC 5 HIS A 41 ASN A 44 0 SHEET 2 AC 5 LYS A 52 ILE A 56 -1 O LEU A 53 N VAL A 43 SHEET 3 AC 5 PHE A 59 MET A 65 -1 O PHE A 59 N ILE A 56 SHEET 4 AC 5 VAL A 105 GLY A 115 -1 O LYS A 106 N GLU A 64 SHEET 5 AC 5 LEU A 23 SER A 24 -1 O LEU A 23 N LEU A 113 SHEET 1 AD 3 ASN A 181 HIS A 185 0 SHEET 2 AD 3 THR A 201 GLY A 203 -1 O THR A 201 N HIS A 185 SHEET 3 AD 3 VAL A 206 ASP A 207 -1 O VAL A 206 N PHE A 202 SHEET 1 BA 2 LEU B 23 SER B 24 0 SHEET 2 BA 2 VAL B 105 GLY B 115 -1 O MET B 111 N LEU B 23 SHEET 1 BB 7 HIS B 41 ASP B 44 0 SHEET 2 BB 7 LYS B 52 ILE B 56 -1 O LEU B 53 N VAL B 43 SHEET 3 BB 7 PHE B 59 MET B 65 -1 O PHE B 59 N ILE B 56 SHEET 4 BB 7 VAL B 105 GLY B 115 -1 O LYS B 106 N GLU B 64 SHEET 5 BB 7 ILE B 94 LYS B 102 -1 O ILE B 94 N GLY B 115 SHEET 6 BB 7 ARG B 137 LEU B 142 -1 O ARG B 137 N GLY B 99 SHEET 7 BB 7 VAL B 147 ASN B 149 -1 O ILE B 148 N ILE B 140 SHEET 1 BC 5 HIS B 41 ASP B 44 0 SHEET 2 BC 5 LYS B 52 ILE B 56 -1 O LEU B 53 N VAL B 43 SHEET 3 BC 5 PHE B 59 MET B 65 -1 O PHE B 59 N ILE B 56 SHEET 4 BC 5 VAL B 105 GLY B 115 -1 O LYS B 106 N GLU B 64 SHEET 5 BC 5 LEU B 23 SER B 24 -1 O LEU B 23 N LEU B 113 SHEET 1 BD 3 ASN B 181 HIS B 185 0 SHEET 2 BD 3 THR B 201 GLY B 203 -1 O THR B 201 N HIS B 185 SHEET 3 BD 3 VAL B 206 ASP B 207 -1 O VAL B 206 N PHE B 202 SSBOND 1 CYS A 89 CYS A 285 1555 1555 2.05 SSBOND 2 CYS B 89 CYS B 285 1555 1555 2.03 CISPEP 1 VAL A 13 PRO A 14 0 -5.46 CISPEP 2 ILE A 35 THR A 36 0 -27.93 CISPEP 3 SER A 49 ASN A 50 0 -5.55 CRYST1 35.964 86.118 122.022 90.00 97.48 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027806 0.000000 0.003651 0.00000 SCALE2 0.000000 0.011612 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008266 0.00000